Gene

KWMTBOMO14009  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004873

Annotation

PREDICTED:_polyribonucleotide_nucleotidyltransferase_1?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr23(+):15834592-15838601      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.983

CDS

ATGTCAAAGCCATTCGATCCTTCTCAGGGCATAGAAGACTACATGGGCGATATGGACTTCAAAGTGGCCGGCACGAAGAAGGGCATCACGGCGCTGCAGGCGGACATCAAGCTGGCCGGCCTGCCGCTCCGCGTCGTCATGGAGGCCGTGCAGCGGGCCTGCGACGCCAATGCCAAGATCATCGACATTATGAACCAATGCCTCGACGCACCCAGACAAGGATTAAAAGAGAACATGCCAGTGATTGAAGAGATCGAAGTGGAAGCTCACAAGCGGCCCAAGCTCCTCGGGCTCGGCGGCTCCAACTTGAAGAAGCTCTACGTTGAGACCGGCGTGCAGGTAAGACATCTAGACTATTAA

Protein

MSKPFDPSQGIEDYMGDMDFKVAGTKKGITALQADIKLAGLPLRVVMEAVQRACDANAKIIDIMNQCLDAPRQGLKENMPVIEEIEVEAHKRPKLLGLGGSNLKKLYVETGVQVRHLDY

Uniprot

H9J5T3   A0A2W1BBA6   A0A2H1WL21   A0A2A4JVN5   A0A2A4JVY3   A0A212FPY4   + More
A0A194RHJ5   A0A2J7PKR5   D6WRI0   N6U217   A0A2J7PKS3   A0A067QS60   A0A0T6B4Y5   A0A2J7PKR7   A0A1B6LA11   A0A336M3M1   A0A1Y1MHJ5   A0A2J7PKS5   A0A1Y1MFU5   A0A226ENF1   A0A0P5B9V6   A0A1B6M4S1   E9GI57   A0A0K8T125   A0A0A9VR83   A0A1D5QY48   A0A0P5UUU7   A0A1D1V9G5   A0A0N8CDM2   A0A1Z5LEV5   A0A026WFK7   A0A1B6HG47   A0A023GLF8   A0A293N476   A0A0P5PC46   A0A3Q0J0A3   A0A232ELF4   K7IR75   A0A1B6D1K8   A0A182IR73   A0A1Y1MEJ8   A0A0P4ZH66   A0A0P5EJ68   G3MKA0   A0A0P5Z0E1   A0A0P6BFE1   A0A1B6G5H2   A0A2R7W850   A0A0N7ZU02   A0A0P5N2G4   A0A0P5IKB5   A0A084VB39   A0A3Q3K0C5   A0A2R5L4P2   A0A3Q3KCV4   A0A3Q3KBI2   A0A1J1J463   A0A3B5B9M7   A0A3L8DLL9   A0A3Q2CRM7   A0A3B5B9I5   A0A131XRJ5   A0A3P9IDC9   A0A131YY19   A0A131Y0A2   V5HZY0   A0A224Z6D3   A0A3Q0RL98   A0A146VC09   A0A3P9JM96   A0A3B5MDH9   G9KHK7   A0A146MPN6   H2LHG8   A0A146MQ27   A0A3Q4AXU4   A0A3Q3H163   A0A146MSI8   A0A0S7GJB5   A0A3Q4HHA6   A0A1B0GPF7   A0A146MRP7   A0A3Q3H145   A0A3Q4MQ15   A0A3P9N4C9   A0A3B5Q4B3   M4AR70   A0A2I4AYL3   A0A146VD49   A0A3Q2P1Q6   A0A3B3Y6A4   A0A3Q2SXZ3   A0A3B3VEV8   A0A3B3Y6B1   A0A3P8R3V9   A0A3Q2U4N1  

Pubmed

19121390    28756777    22118469    26354079    18362917    19820115    + More
23537049    24845553    28004739    21292972    25401762    26823975    17431167    27649274    28528879    24508170    28648823    20075255    22216098    24438588    30249741    28049606    17554307    26830274    25765539    28797301    23236062    25186727    23542700   

EMBL

BABH01025198    BABH01025199    BABH01025200    BABH01025201    KZ150371    PZC71144.1    + More
ODYU01009033    SOQ53144.1    NWSH01000577    PCG75543.1    PCG75542.1    AGBW02000220    OWR55807.1    KQ460205    KPJ16795.1    NEVH01024531    PNF16934.1    KQ971351    EFA06447.1    APGK01045628    KB741037    KB632319    ENN74666.1    ERL92290.1    PNF16930.1    KK853697    KDQ96253.1    LJIG01009785    KRT82386.1    PNF16932.1    GEBQ01019427    JAT20550.1    UFQT01000509    SSX24854.1    GEZM01036370    JAV82757.1    PNF16933.1    GEZM01036371    JAV82756.1    LNIX01000002    OXA59195.1    GDIP01187468    JAJ35934.1    GEBQ01009055    JAT30922.1    GL732546    EFX80827.1    GBRD01006584    JAG59237.1    GBHO01044672    GDHC01009054    JAF98931.1    JAQ09575.1    JSUE03010920    JSUE03010921    JSUE03010922    GDIP01125037    JAL78677.1    BDGG01000004    GAU98331.1    GDIP01142071    JAL61643.1    GFJQ02001037    JAW05933.1    KK107238    EZA54837.1    GECU01034053    JAS73653.1    GBBM01000661    JAC34757.1    GFWV01023145    MAA47872.1    GDIQ01132870    JAL18856.1    NNAY01003564    OXU19193.1    GEDC01017707    JAS19591.1    GEZM01036372    JAV82755.1    GDIP01217174    JAJ06228.1    GDIP01159182    JAJ64220.1    JO842301    AEO33918.1    GDIP01050745    LRGB01000704    JAM52970.1    KZS16503.1    GDIP01015966    JAM87749.1    GECZ01012206    JAS57563.1    KK854443    PTY15892.1    GDIP01212721    JAJ10681.1    GDIQ01148270    JAL03456.1    GDIQ01220148    JAK31577.1    ATLV01005272    ATLV01005273    KE524276    KFB35183.1    GGLE01000358    MBY04484.1    CVRI01000070    CRL07195.1    QOIP01000007    RLU20809.1    GEFH01000410    JAP68171.1    GEDV01005182    JAP83375.1    GEFM01002883    JAP72913.1    GANP01004130    JAB80338.1    GFPF01010704    MAA21850.1    GCES01071417    JAR14906.1    JP015784    AES04382.1    GCES01164674    JAQ21648.1    GCES01164673    JAQ21649.1    GCES01164672    JAQ21650.1    GBYX01453275    JAO28240.1    AJVK01033652    GCES01164675    JAQ21647.1    GCES01071416    JAR14907.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000235965    UP000007266    + More
UP000019118    UP000030742    UP000027135    UP000198287    UP000000305    UP000006718    UP000186922    UP000053097    UP000079169    UP000215335    UP000002358    UP000075880    UP000076858    UP000030765    UP000261600    UP000183832    UP000261400    UP000279307    UP000265020    UP000265200    UP000261340    UP000261380    UP000001038    UP000261620    UP000261660    UP000261580    UP000092462    UP000242638    UP000002852    UP000192220    UP000265000    UP000261480    UP000261500    UP000265100   

PRIDE

H9J5T3    G3MKA0   

Pfam

PF01138   RNase_PH        + More
PF03725   RNase_PH_C
PF03726   PNPase
PF00013   KH_1
PF13393   tRNA-synt_His
PF12745   HGTP_anticodon2
PF00575   S1

Interpro

IPR036612   KH_dom_type_1_sf        + More
IPR027408   PNPase/RNase_PH_dom_sf       
IPR012162   PNPase       
IPR012340   NA-bd_OB-fold       
IPR015848   PNPase_PH_RNA-bd_bac/org-type       
IPR001247   ExoRNase_PH_dom1       
IPR015847   ExoRNase_PH_dom2       
IPR036345   ExoRNase_PH_dom2_sf       
IPR003029   S1_domain       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR004087   KH_dom       
IPR036456   PNPase_PH_RNA-bd_sf       
IPR004088   KH_dom_type_1       
IPR036621   Anticodon-bd_dom_sf       
IPR041715   HisRS-like_core       
IPR024435   HisRS-related_dom       
IPR022967   S1_dom       

SUPFAM

SSF50249   SSF50249        + More
SSF55666   SSF55666       
SSF54791   SSF54791       
SSF54211   SSF54211       
SSF46915   SSF46915       

Gene 3D

3.30.1370.10     3.30.230.70     3.40.50.800    

ProteinModelPortal

H9J5T3   A0A2W1BBA6   A0A2H1WL21   A0A2A4JVN5   A0A2A4JVY3   A0A212FPY4   + More
A0A194RHJ5   A0A2J7PKR5   D6WRI0   N6U217   A0A2J7PKS3   A0A067QS60   A0A0T6B4Y5   A0A2J7PKR7   A0A1B6LA11   A0A336M3M1   A0A1Y1MHJ5   A0A2J7PKS5   A0A1Y1MFU5   A0A226ENF1   A0A0P5B9V6   A0A1B6M4S1   E9GI57   A0A0K8T125   A0A0A9VR83   A0A1D5QY48   A0A0P5UUU7   A0A1D1V9G5   A0A0N8CDM2   A0A1Z5LEV5   A0A026WFK7   A0A1B6HG47   A0A023GLF8   A0A293N476   A0A0P5PC46   A0A3Q0J0A3   A0A232ELF4   K7IR75   A0A1B6D1K8   A0A182IR73   A0A1Y1MEJ8   A0A0P4ZH66   A0A0P5EJ68   G3MKA0   A0A0P5Z0E1   A0A0P6BFE1   A0A1B6G5H2   A0A2R7W850   A0A0N7ZU02   A0A0P5N2G4   A0A0P5IKB5   A0A084VB39   A0A3Q3K0C5   A0A2R5L4P2   A0A3Q3KCV4   A0A3Q3KBI2   A0A1J1J463   A0A3B5B9M7   A0A3L8DLL9   A0A3Q2CRM7   A0A3B5B9I5   A0A131XRJ5   A0A3P9IDC9   A0A131YY19   A0A131Y0A2   V5HZY0   A0A224Z6D3   A0A3Q0RL98   A0A146VC09   A0A3P9JM96   A0A3B5MDH9   G9KHK7   A0A146MPN6   H2LHG8   A0A146MQ27   A0A3Q4AXU4   A0A3Q3H163   A0A146MSI8   A0A0S7GJB5   A0A3Q4HHA6   A0A1B0GPF7   A0A146MRP7   A0A3Q3H145   A0A3Q4MQ15   A0A3P9N4C9   A0A3B5Q4B3   M4AR70   A0A2I4AYL3   A0A146VD49   A0A3Q2P1Q6   A0A3B3Y6A4   A0A3Q2SXZ3   A0A3B3VEV8   A0A3B3Y6B1   A0A3P8R3V9   A0A3Q2U4N1  

PDB

3U1K     E-value=7.94156e-25,     Score=275

KEGG

105842281    K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] | (RefSeq) polyribonucleotide nucleoti

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0006402   GO:0006396   GO:0003723   GO:0004654   GO:0000957   GO:0000965   GO:0000963   GO:0005829   GO:0000958   GO:0005739   GO:0000175   GO:0006401   GO:0016740   GO:0007186   GO:0016021   GO:0004930   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR11252  

Length:

119

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01174

Exp number, first 60 AAs:

0.01174

Total prob of N-in:

0.07826

outside

1  -  119

 

 

Pi

324.262413

Theta

243.65672

Tajima's D

0.923642

CLR

1047.677727

CSRT

0.638618069096545

Interpretation

Uncertain