Gene

KWMTBOMO14006

Pre Gene Modal

BGIBMGA011260

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_2-like_[Bombyx_mori]

Location

Bomo_Chr23(-):15808042-15809411      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.119 Extracellular   Reliability : 1.343 Nuclear   Reliability : 1.453

CDS

ATGGAGTCCACGTCCATAGAGTACGAGACTGAGCGGAACTGTAAGGTCCAGAAGGTGGGCGGTCTACTCGACAGGAAGGGCTACGGAATCGCCATGAAGAAAGACTCACCTTACCGACAGGAGCTCAACCTAGCCTTGTTGAACCTGCAGGAAGCTGGCGTCCTTCGTGAGATGATGCATACTTGGTGGATGGAGAAGAATGGCGGAGGAGCATGCAAGGAGGACGAAACCCGAGAGAACCAAGAGCTGCGCATAAAGAACTTCTTAGGTCTATTCGTGGTGCTAGTGGTGGGCTGCGTGCTGGGCGTGCTGGTGTCGTGCTGCGACCTGGCGTGGGCGGCGCGGCGGCAGCGCGGCCCCAGCGAGTCCTTCTGGCAGCGCTTCTGGACCGAACTGCGCTTCGTCTTTCGCTTCGAGCAATCCGTGAAGCCCCTGCAAGGTCCGCTGATCCCAGACTCGCCGGTTTCCCAACAGTCGGAGGGGGCGGAGGAGTGCAGGACGGAGCGCGAGGAGACGGGCTCCGAGAGGGCGCGCGCTGCGCCGCGGACGAGCTCGGCGGCGCGGCGGCGGTCCTCCATGCACGCGGCGTCACTTCGCATCGCGCGGCACACCACACGGGACTCCACCACGCCGCACTAG

Protein

MESTSIEYETERNCKVQKVGGLLDRKGYGIAMKKDSPYRQELNLALLNLQEAGVLREMMHTWWMEKNGGGACKEDETRENQELRIKNFLGLFVVLVVGCVLGVLVSCCDLAWAARRQRGPSESFWQRFWTELRFVFRFEQSVKPLQGPLIPDSPVSQQSEGAEECRTEREETGSERARAAPRTSSAARRRSSMHAASLRIARHTTRDSTTPH

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

A0A2A4JH89   A0A212FHV0   A0A2H1W5R2   A0A0N1IFQ0   A0A194QE48   A0A212EQV2   + More
H9JPN1   Q7QCT5   A0A084WPK2   A0A182IWS9   W5JKE9   A0A3S2P2Q6   A0A2H1VML2   A0A0B5A1Y0   A0A075T675   A0A2P2I6V4   A0A2A4J8S4   A0A310S3G0   A0A2W1BQI7   A0A075T6Z7   A0A194RR85   A0A195FWY9   A0A1J1IXR3   A0A139WN33   A0A2A4J956   U4ULN9   N6U0Q8   A0A310SWC4   A0A182YEZ6   A0A1W4XE85   A0A1W4XFF8   A0A1W4X4N7   A0A1I8PDV3   A0A0M4JB15   E9J908   A0A026WFJ3   A0A182G7V3   A0A3L8DJR0   B4NFR5   A0A0N8E969   A0A1Y1KUX6   A0A164VSV3   A0A0P6GSX4   A0A0P6F5W5  

Pubmed

22118469    26354079    19121390    12364791    24438588    20920257    + More
23761445    25027790    28756777    18362917    19820115    23537049    25244985    26265180    21282665    24508170    26483478    30249741    17994087    28004739   

EMBL

NWSH01001530    PCG70954.1    AGBW02008466    OWR53304.1    ODYU01006510    SOQ48421.1    + More
KQ460973    KPJ10107.1    KQ459144    KPJ03752.1    AGBW02013203    OWR43876.1    BABH01015227    AAAB01008859    EAA07814.5    ATLV01025092    KE525369    KFB52146.1    ADMH02000851    ETN64852.1    RSAL01000042    RVE50837.1    ODYU01003373    SOQ42048.1    KJ542729    AJD81613.1    KF768731    AIG51925.1    IACF01004161    LAB69755.1    NWSH01002576    PCG67934.1    GGOB01000013    MCH29409.1    KZ150075    PZC73973.1    KF768735    AIG51929.1    PZC73974.1    KQ459833    KPJ19820.1    KQ981193    KYN45170.1    CVRI01000063    CRL04872.1    KQ971312    KYB29342.1    PCG67933.1    KB632275    ERL91101.1    APGK01053935    KB741239    ENN72127.1    KQ759841    OAD62633.1    KP843209    ALD51346.1    GL769168    EFZ10638.1    KK107238    EZA54693.1    JXUM01008704    KQ560267    KXJ83447.1    QOIP01000007    RLU20169.1    CH964251    EDW83132.2    GDIQ01049516    JAN45221.1    GEZM01076945    JAV63525.1    LRGB01001361    KZS12620.1    GDIQ01039354    JAN55383.1    GDIQ01054145    JAN40592.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000005204    UP000007062    + More
UP000030765    UP000075880    UP000000673    UP000283053    UP000078541    UP000183832    UP000007266    UP000030742    UP000019118    UP000076408    UP000192223    UP000095300    UP000053097    UP000069940    UP000249989    UP000279307    UP000007798    UP000076858   

PRIDE

H9JPN1   

Pfam

PF01094   ANF_receptor        + More
PF10613   Lig_chan-Glu_bd
PF00060   Lig_chan
PF12832   MFS_1_like
PF00497   SBP_bac_3
PF02437   Ski_Sno
PF08782   c-SKI_SMAD_bind

Interpro

IPR001508   Iono_rcpt_met        + More
IPR028082   Peripla_BP_I       
IPR019594   Glu/Gly-bd       
IPR001320   Iontro_rcpt       
IPR001828   ANF_lig-bd_rcpt       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR024989   MFS_assoc_dom       
IPR001638   Solute-binding_3/MltF_N       
IPR010919   SAND-like_dom_sf       
IPR009061   DNA-bd_dom_put_sf       
IPR014890   c-SKI_SMAD4-bd_dom       
IPR037000   Ski_DNA-bd_sf       
IPR003380   SKI/SNO/DAC       

SUPFAM

SSF53822   SSF53822        + More
SSF103473   SSF103473       
SSF46955   SSF46955       
SSF63763   SSF63763       

Gene 3D

3.10.260.20     3.10.390.10    

CDD

cd06174  MFS

ProteinModelPortal

A0A2A4JH89   A0A212FHV0   A0A2H1W5R2   A0A0N1IFQ0   A0A194QE48   A0A212EQV2   + More
H9JPN1   Q7QCT5   A0A084WPK2   A0A182IWS9   W5JKE9   A0A3S2P2Q6   A0A2H1VML2   A0A0B5A1Y0   A0A075T675   A0A2P2I6V4   A0A2A4J8S4   A0A310S3G0   A0A2W1BQI7   A0A075T6Z7   A0A194RR85   A0A195FWY9   A0A1J1IXR3   A0A139WN33   A0A2A4J956   U4ULN9   N6U0Q8   A0A310SWC4   A0A182YEZ6   A0A1W4XE85   A0A1W4XFF8   A0A1W4X4N7   A0A1I8PDV3   A0A0M4JB15   E9J908   A0A026WFJ3   A0A182G7V3   A0A3L8DJR0   B4NFR5   A0A0N8E969   A0A1Y1KUX6   A0A164VSV3   A0A0P6GSX4   A0A0P6F5W5  

PDB

5DTB     E-value=7.43121e-15,     Score=193

KEGG

105841247    no KO assigned | (RefSeq) glutamate receptor ionotropic, kainate 2-like

GO

GO:0045211   GO:0004970   GO:0030054   GO:0016021   GO:0005886   GO:0046332   GO:0006811   GO:1904315   GO:0008066   GO:0050804   GO:0035249  

Subcellular location

  

Length:

212

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.59305

Exp number, first 60 AAs:

0.01689

Total prob of N-in:

0.67433

inside

1  -  90

TMhelix

91  -  113

outside

114  -  212

 

 

Pi

199.493661

Theta

200.260962

Tajima's D

-0.386606

CLR

0.588784

CSRT

0.271936403179841

Interpretation

Uncertain