Pre Gene Modal
BGIBMGA011345
Annotation
PREDICTED:_tetraspanin-11-like_[Bombyx_mori]
Full name
Tetraspanin
Location in the cell
PlasmaMembrane Reliability : 3.222
Sequence
CDS
ATGGGTATGTCACGGTGTTACTCCCTCATGAAGTATCTTTTAATAGTGTTCAACATAATATTTATGTTTGTGGGCTTGGGTTGTGTAACTTTTGCTTCTTGGGCTCTGTGGGAAGGAAGTGCTGCAGAGACGGCTTCAGGACGCGCTGCATTGGGCGCCGTATTAGCGTGGGGCCTTGCTCTACTAGTTGGAGCTGCTTTGGCTTTGGGTGGAGCGGTGAGAGGTTCTTGCGCGTTATTGGGTGCGGCTTGTGCATTGCTAGCGCTGGCCGCCGCAGCTGAGGCCGCAGCCGCGTGTTGGGGCGCCGCTCACTTGCCACGCCTGCACCGTGCTCTGCGTGACACCCTGTCCCTTACAGTACGACAACATTATGGACTCCTACCCTCTCGCACTCAGATCATTGATGCCATACAAGAGGGGTTGGAGTGTTGCGGAGCAGACAGTGCACGTGACTGGCAGGAGTCATGGTGGTCGCAGCGGCAAGTGCCGTCCTCGCCTGTATTAGATCTCTCCGTGTCCGCGCCGGCACTACACTACTCTGTGCCGGCCTCCTGCTGCAAGAGTCGCGAGGTGGCGGCGTGCGAGGCGGCGCGCGTGCTGGCGGGCGCGAGCGGGGCGGGGCGCGGGGTGCACGGCGCGGGGTGCGCGGGGCGCGTGCTTTGGGCGCTGCAGCACGCCGCGCGGCTGCCGCTCTCGCTGGGCGCGCTGATGCTGGCGCTCCACGCTCTCACGCTACTGCTGACGCTGGCGCTTGCTCTCCGGCCCGCTCCTCCCAACGCATACAAAGCGTGA
Protein
MGMSRCYSLMKYLLIVFNIIFMFVGLGCVTFASWALWEGSAAETASGRAALGAVLAWGLALLVGAALALGGAVRGSCALLGAACALLALAAAAEAAAACWGAAHLPRLHRALRDTLSLTVRQHYGLLPSRTQIIDAIQEGLECCGADSARDWQESWWSQRQVPSSPVLDLSVSAPALHYSVPASCCKSREVAACEAARVLAGASGAGRGVHGAGCAGRVLWALQHAARLPLSLGALMLALHALTLLLTLALALRPAPPNAYKA
Summary
Similarity
Belongs to the tetraspanin (TM4SF) family.
Uniprot
EMBL
Proteomes
PRIDE
Pfam
PF00335 Tetraspanin
SUPFAM
SSF48652
SSF48652
Gene 3D
ProteinModelPortal
Ontologies
GO
Topology
Subcellular location
Membrane
Length:
263
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
89.8270200000001
Exp number, first 60 AAs:
34.47262
Total prob of N-in:
0.95557
POSSIBLE N-term signal
sequence
inside
1 - 11
TMhelix
12 - 34
outside
35 - 48
TMhelix
49 - 71
inside
72 - 77
TMhelix
78 - 100
outside
101 - 230
TMhelix
231 - 253
inside
254 - 263
Population Genetic Test Statistics
Pi
250.360508
Theta
162.929594
Tajima's D
1.624991
CLR
0.323247
CSRT
0.814159292035398
Interpretation
Uncertain
