Silkworm Genome Informatics Database

Gene

KWMTBOMO13999 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011343

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_PHD_and_RING_finger_domain-containing_protein_1_[Bombyx_mori]

Location

Bomo_Chr23(+):15696042-15707879 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.931

CDS

ATGAGGGTAGTGAGCGACGATGAGATTGACAGCAGCGGTAGCGAGGTGGTGCGCACTCGTCGAGGACGGGCTCTGCCCAAATTACGGGATTCGGACAGCGAGGGTGCTGCATGTCTCGCCGACGCTGTACCGAGGCCGACCTCAGGGTTCGCTTCCGACAGCTCAGAAGGCAACTCCGAAAAATGTTCCATTTGCCTTATGCGGTTTACTGATCAAGAAGTAGGAACCCCTCAAAGTTGTGAACATATATTTTGTCTGGATTGTATTACTGAGTGGTCAAAAAATGTGAATACCTGTCCTGTGGATCGGCTGACATTTGACTCTATTGTAGTGAGAGCTTGTGCCGGTGGACGTGTACTGCGCACTGAACAAGTGAAAGTTATTGAAAGGAGACCTTCTGTAGACGTACTGGTGGTTGAAGACCCAACAGTGTGTGAGGTATGTGGAAGGTCAGGAGATGAAGAGTCAATGTTATTGTGTGACGGGTGTGACCTCGGATACCACATGCAGTGCCTTTCCCCCCCTTTAACTGAGGTCCCTATAGATCAGTGGTACTGTCCCAGCTGTAATGACTTGATTGATGTAGTACACACTTCTGAGGTGGACGACCTCCTGTCAGATGTGTTCGTAGATATGTATATGCCGATTGGACCTCGTCCTTCACCACTTAGACAGCCTCGTAATGTGAGGAGATCATCTAGACAGAGATCAACAATAGAAGGTCCATCAATATCTTCAGATACACAAGGCAATGTGTTAAACTCAAATGTCATTCCCTCCACATCACGAGGTTCACTATCTATTCAAAGCAGTAGTTCTCGAGGGTCAAGGACACGCAGAGTGACAACTTCTCGTCCAACAAGGCGTCGAAAATATAGAAGACAAAAAACAGTCATAATAGAATATGAAGAAGCTGAAAATGGAAAAGTAGCAATCAAAACAGTACAAAAGAAAGTCGCAAGAAAAAAGATAAGGAAGCGAAAAACTCGCACGGCGGCCCGGCGCGCCCTGGTTCGGGAGAGTGTGCGCGTCCGGCTCGCCGCCCTCCGTCCCCCCAGCCTACCCCTCGCCCCAACCCGCCTCGCCCGCACCCTGCCCCGCCCCGCCCTGCGGCTGTTCGGGGACCCGCTGGAGCTAGACTACTTTTCGGACGAGGCGCCTGGCGACTCGGAGTCTGCCAGCACGGCCGTGGCTGCGAGATCCACTTCCGCTCTGTTGAGCGCTCACAGGCAGGCAAGACGAAAGGCCGTTGGCATTCCATCCCCGCCTGTGGCTGCTTCCGCGCCGGATCTCTTGTCGAGTATAATGGAGAGTCAAACACTGCTGCACGCCAAGAACTCAATAATGTCAGTCACCGGCGACGGCAAGCTCGAGATAAAACTACGATCACCGATCGCCAGGCCTCGGGAGCAGCGCTCGGACCCGACGACGAATGGGAGAGTCGACTTGACGAAGGGCGAGGATTCTGCCAAGAAAGCACCCTCCTATCCGGGTCAGCATCGCAGTGGCGGCTGGGGAGGAGGTTACCGCGGTAACTATCACCGGGAGCAGGGCCACACGGGGTTCGGGCGTGCAAGTTACGGGGGTGCGGGGTACGCGGGCGGCGGTCAACAGGCTCAAAATCAGAATTCCAACTTTGACGACCGACAGGGAAGCGCGTACCGTCCGATGGACGCGTGGCGCGACGAGCCCCCCCTCCACGGAGACTACGGCAGGTGGCCCCCGCGACATCCGCTCGCACACGACGTCCCCTCCGATCGAAACCGCCGCAACTCGGACCGCGGTCCCCCACCACGCGCTCCGCCCCCCTGGCGACCCTACGTGCCGCCGCATCCCTCGCGCCACTCCTTCGGGGGCTTTGACAACCCTCTAGACATGCGCACGGCACCGCACCACTACGACCGCCCCACCGTGGCGGCGCGTCCTCTGCCAGAACCGCCCATCTTTAAATTCGACGATAACAACGAGGTCGAGCGGTCGGAAGACGAACGCAGCGACCCCGACCTGGTGATCGACACGGACAAGTACGACCCGACCGAGCCCACTAACGACGACAGCGCCGAGGAGCCCGAGCTCCCGCCAGAGGGACCGCACGTTGACGTCAAAAGTGCAAATTCTAACTTTCAGTCGATCGATGAATCCGTCGCCGAGTCCGAGACCGAGGCGGAGGCGGAGGGAGAGACGCACGGGGTGGGGGCGGGGGCCGCGGGGATGGAGGCCGCCGCCGTGCCCGCCGCCCTGCTGGACGACGCCGTGCGCCAGGTGCTGGCCGAGCACCGCGGGCTGCTGGCCGCGCCGCCGCCCCTCAGCGACGAGGAGGACGACGGCGACTGCCCCAACTTCTCAATTTACTCGGCCACCAGCGTGCACATCGCCAACGACGCGGCCGCGGGCGTGCTGCCGGCCGAGAACCCCGCCCCGCGCCCCTCCGACGACCTGCGTGACCTCGTGCAGGAGGACGACGACCTGTCGCCGCCGCCCCCCCTCGATGCTGTCCCCAAAAAGAAATCTGATGAAATTTACAACGAAAAAGTATCGAAAAGGTGTCCCATCACCACCGACACTCGAAGCCCCATAAAAATAAAAATCAACGCTCCCTCGTTGATAAAGAAGCGTGTGTCTCTCTACGACGAAGAGGAAGATTCAATGCCGGCAGAATCGGGAGCTCCTCCAGAAGACGAGAGTTCACCTTCCAAAAGCGTAGAACCTAACGTGGAAACGGATAAAAAATCAGTGGAAACTGTAACACAAAAGAATTCTTCGGAAGATAATAAAGATAATGCAGTTTCACAGATGGCCTCATCCGACTTGCACAATAGTGACCTAAATTCGCACGAGCTCGATAGCGCCAAGCAAGTGACGGAAGCAGATGCCTTCCCCGAAGCCTCGTGCGAGCCTGCAGCCGACGGAGGTGAAAACGTAAAAGATAACCGAACTATACCGAGCAGTGATGTGTTGGAGACTGCGCATAAATCTGATCACACGGAGCAGTCCGACTCGGAGACGTCCGAGCCCGGCGACCGCGAGCGACCCGCCTCTGTGTCTCCGCGGGGAGAGGAGCCGCTGGAGAAGATGACCGAGTCAATCAGCGAGACGGAGGACGAGCGCAGCTACACGCCCTGTCTCGACGAAAATAAATCCAAAGATACATCTCTCGAGACAGAAAAAGACAAAGGACTCGAAGGACTCGACACAGAAATGATATCAGAAGACGAAGGGAACGAGATGTTCTCGGAGGAGGACAAACCGAAGTCCGTCGGCGCGCCCTGCCCGTCCCCCGAGCGACCGCCCGAACGGCTGCGGTCGCCGCCCCTCGACAGCAAGAAGGACGCAAAGGACTCCGAAGGCAAAGGAAGGAAGAAAAAGAAAGACACAAAAAAAGATGCAAAAGAACGAGTAAAGACCAAAAAGAAAACTGATGTTGAATTTAAGAAACTTAGCAAAAACGGTAAGGAACGAAATTATAGGGAAAGAGACAAAAACGGAACGCGAGACCGTCGCGAGTCCACTGACTCTGCGGAAAGAGAAAAACGTAAGCGAAAAAGGAAAGAAAAGAGGAAAGATCTCGAGCGATATGACGTCAGAAATATTGTTAGTGAAAAGCGAAAGAAACGAAAAGATCAATTTGGGCCTTCGAAACGACGATCGCCTCGAAAGAAATCGCCTAAGCGACGCAGAATTCGAAATCGAAGCGCGAGCAGGGTTCCGGCGCCGTCTCCGACACGCGGCTCGCCCTCCCCCGCGCCCCCGGCCGTCTCCGGTGCCCCTGTCGCTCCTGCGCAATGGACTTCTCCCTCCCGCCTCGCGTCTCCACGCACACCCCCCGCCGCGCCCCGCCGGCGCCGCGACCCCGCTCGCCACCGTCGCCACGCGCGCGATCCCGGCGGAGCGTCCAAGGAGGTGTTCACGTCCGGCGACAACATCCTGGTCAGCGTTAGCTTTAAAGATCAAGACAGAGTCGTCGATGACGACAAACGGGAGAGACGTCGGGAGCGACGACGTCGCAAACGAAAGACCGCAGCACCTGAGCCCGAAGTCGGTGTGCGACCCGTCGCCATCATTGATTTGGAGCGGTCTCCATTCCGCGAACTGACGCCGTCCCCGCGCGACGTCATCGTGCTCAGCGACAGCGACCCCGGGGAGAGGGAACCCGCGCCGGCCCCCGAGGTTGCCGCGCCTGAACCGGTCGGACCGAAGACTCCGCCCGAGCCGACGACCGCCGAGCCAGCGCCAGCCGCAGACCCGGAAGACGGCCGCGGCCCTAACACGCCGCCCGAGCCCCCGGACTCGCCGGACGCGTACGACCCGTACGAGCCCACGAGGTCCGCCTCCGCCTCTCCCTCCCCCGCACCTTCCCCCGCGCCCGCCCTCAGTCCGCCGCGCCCCACCATCACGCTCGAGGCCGCGCAAAAAACAAACATGTCCGCCGACGAAGTACTCGACAGAAGACCGCTGTCACCCATGGAAAAGGTGATGGCGTTGCTGCAGTCTACTCGAGACGTGTCTCCGGAGCCGCCGCCGTGCGACCCCCTTCCGACCGCCGAAGTGACCCCCGGGCCCCCGCCGGCCGCCGCCCCGCAAGTCCCGGCCGCCGCCCCACCCCGCATCGTGTTGCCGGAGGCGACGCGGACACAGCCGCCGAAGCTGTTCCTGGCGAAGCCTTCTCCGATCAAGTCGGATCCTATAAAGCCGATGCCGGCGGCGAAGATAGCACGCGTCCCCCTGGGCAGCGGTGGGGGGGGTGCGCCGGCGGTGTCCCTGCCGGGGGAGGACTCCCCGTACTCCCCGGGCTCCAGCGACTTCGGGGAGTTGTTCGAGCCGCCCCGCCGCGACATGTTTGAGGCGCTGCTGGACCGGCCCCGACACAAGTCCCGCTCCAACGCAGCTAAAGTGCCCGTCAAACTCGACCGTCACAAAGGGAAGACTCAAGTAGGTGTGAAAATAGATGAAGATAGTTTGAAGATACTGGACGAACTCCCCAGCTCTGCGGTCGAGATGCAGGTCAAGAGTAAATTCTTGAAGAAGCTCAACAGACAGGAGCGAGTGGTTGAAGAAGTGAAGTTGGTCTTGAAGCCGCACTACAACAGAAAGCGCATCACTAAAGAAGAGTACAAGGATGTGCTCCGACGAGCTGTCCCCAAGATCTGCCACAACAGAACAGGAGAGATCAACCCCACGAAGATCCAGGCTCTGATCGAGGCTTACGTGAGGAAGATCCGGAAGAAACACAAGCTCGGCCTCGCGTAG

Protein

MRVVSDDEIDSSGSEVVRTRRGRALPKLRDSDSEGAACLADAVPRPTSGFASDSSEGNSEKCSICLMRFTDQEVGTPQSCEHIFCLDCITEWSKNVNTCPVDRLTFDSIVVRACAGGRVLRTEQVKVIERRPSVDVLVVEDPTVCEVCGRSGDEESMLLCDGCDLGYHMQCLSPPLTEVPIDQWYCPSCNDLIDVVHTSEVDDLLSDVFVDMYMPIGPRPSPLRQPRNVRRSSRQRSTIEGPSISSDTQGNVLNSNVIPSTSRGSLSIQSSSSRGSRTRRVTTSRPTRRRKYRRQKTVIIEYEEAENGKVAIKTVQKKVARKKIRKRKTRTAARRALVRESVRVRLAALRPPSLPLAPTRLARTLPRPALRLFGDPLELDYFSDEAPGDSESASTAVAARSTSALLSAHRQARRKAVGIPSPPVAASAPDLLSSIMESQTLLHAKNSIMSVTGDGKLEIKLRSPIARPREQRSDPTTNGRVDLTKGEDSAKKAPSYPGQHRSGGWGGGYRGNYHREQGHTGFGRASYGGAGYAGGGQQAQNQNSNFDDRQGSAYRPMDAWRDEPPLHGDYGRWPPRHPLAHDVPSDRNRRNSDRGPPPRAPPPWRPYVPPHPSRHSFGGFDNPLDMRTAPHHYDRPTVAARPLPEPPIFKFDDNNEVERSEDERSDPDLVIDTDKYDPTEPTNDDSAEEPELPPEGPHVDVKSANSNFQSIDESVAESETEAEAEGETHGVGAGAAGMEAAAVPAALLDDAVRQVLAEHRGLLAAPPPLSDEEDDGDCPNFSIYSATSVHIANDAAAGVLPAENPAPRPSDDLRDLVQEDDDLSPPPPLDAVPKKKSDEIYNEKVSKRCPITTDTRSPIKIKINAPSLIKKRVSLYDEEEDSMPAESGAPPEDESSPSKSVEPNVETDKKSVETVTQKNSSEDNKDNAVSQMASSDLHNSDLNSHELDSAKQVTEADAFPEASCEPAADGGENVKDNRTIPSSDVLETAHKSDHTEQSDSETSEPGDRERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKPKSVGAPCPSPERPPERLRSPPLDSKKDAKDSEGKGRKKKKDTKKDAKERVKTKKKTDVEFKKLSKNGKERNYRERDKNGTRDRRESTDSAEREKRKRKRKEKRKDLERYDVRNIVSEKRKKRKDQFGPSKRRSPRKKSPKRRRIRNRSASRVPAPSPTRGSPSPAPPAVSGAPVAPAQWTSPSRLASPRTPPAAPRRRRDPARHRRHARDPGGASKEVFTSGDNILVSVSFKDQDRVVDDDKRERRRERRRRKRKTAAPEPEVGVRPVAIIDLERSPFRELTPSPRDVIVLSDSDPGEREPAPAPEVAAPEPVGPKTPPEPTTAEPAPAADPEDGRGPNTPPEPPDSPDAYDPYEPTRSASASPSPAPSPAPALSPPRPTITLEAAQKTNMSADEVLDRRPLSPMEKVMALLQSTRDVSPEPPPCDPLPTAEVTPGPPPAAAPQVPAAAPPRIVLPEATRTQPPKLFLAKPSPIKSDPIKPMPAAKIARVPLGSGGGGAPAVSLPGEDSPYSPGSSDFGELFEPPRRDMFEALLDRPRHKSRSNAAKVPVKLDRHKGKTQVGVKIDEDSLKILDELPSSAVEMQVKSKFLKKLNRQERVVEEVKLVLKPHYNRKRITKEEYKDVLRRAVPKICHNRTGEINPTKIQALIEAYVRKIRKKHKLGLA

Uniprot

A0A212FHT8

Pubmed

22118469

EMBL

AGBW02008466 OWR53296.1

Proteomes

UP000007151

Pfam

PF00628 PHD + More
PF13639 zf-RING_2

Interpro

IPR017907   Znf_RING_CS        + More
IPR011011   Znf_FYVE_PHD
IPR013083   Znf_RING/FYVE/PHD
IPR001965   Znf_PHD
IPR019787   Znf_PHD-finger
IPR019786   Zinc_finger_PHD-type_CS
IPR001841   Znf_RING

SUPFAM

SSF57903 SSF57903

Gene 3D

3.30.40.10

ProteinModelPortal

A0A212FHT8

PDB

2MIQ E-value=2.34072e-10, Score=163

KEGG

101736545 K17586 PHD and RING finger domain-containing protein 1 | (RefSeq) PHD and RING finger domain-contain

GO

GO:0046872 GO:0005515 GO:0008270 GO:0005856 GO:0016311 GO:0016791 GO:0007166 GO:0016020 GO:0004713 GO:0016491 GO:0015930

Length:

1748

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1748

Pi

227.220804

Theta

212.276871

Tajima's D

0.458428

CLR

0.272325

CSRT

0.505124743762812

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics