Gene

KWMTBOMO13996  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011264

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX10_[Bombyx_mori]

Location

Bomo_Chr23(-):15650111-15653111      View in EpiBrowser

Full name

RNA helicase      

Location in the cell

Nuclear   Reliability : 3.941

CDS

ATGAAACAAGAAGAAAAAGACCCAAAAGCTCAACGAGGGCGTAAGAAAGTTTTGTTGTATAAACCACGTAAGAAAAAAAGCTTTGAGGAAGATGCCGCAATCAAATATTTACAGGGGCAATATGAAAAGATAAATCCGGATGACATAAGAACTTTTAAAGATTTTCCCCTCTCCCAGAAAACTCTAAATGGACTCAAAGCGAATAATTACGTGACTCCCACTGAAATACAGAAACAAGCTATCGGATATGCACTGCAAGGAAAAGATATCCTTGGCGCAGCTAAAACAGGTTCTGGCAAAACCTTAGCATTCTTAATACCCATATTAGAAAACTTGTTTTGTAAGAAATGGACCAGATTAGATGGAGTTGGAGCATTAGTGATATCACCAACAAGAGAGCTAGCTTACCAAATATATGAAACTCTCAGGAAAATTGGACATTTTCATGATTTCTCTGCTGGACTGATTATTGGTGGACAGAATTTAAAATTTGAACGAAAAAGAATGGATCAAATCAATATATTAATATGTACTCCAGGTAGGTTGCTGCAGCACATGGATGAGAACCCTCTGTTTGACTGTAGCCACCTCCAAATTGTTGTCCTAGATGAGGCTGATAGGTGCTTAGATATGGGCTTTGAAACCACGATGAATGCTATAATAGAGAACTTGCCGCCTCAAAGACAAACATTGCTTTTCTCGGCGACACAGACTAAATCTGTTAAAGATTTAGCCAGACTGAGCTTGTCATTTCCCACATATGTAGCTCCTCATGAGCAAGCTGCCACAGTAACTCCAGAGGCACTACAACAGAGTTACATCACATGTGAGATTGATGAGAAAATTGGAATACTTTGGTCTTTTATTAGAAACCATTTGAAACAAAAAGTGCTAGTGTTTATGGCAACCTGTAAGCAAGTTAAATACACTTATGATTTGTTCTGTAAGCTGAGGCCTGGGGTCAGTTTACTGGCTCTCTATGGAACTCTGCATCAGGAGAAAAGAGAAAAGATTTATAATGAATTTTGTAGGAAATCAAATGTTGTATTGTTTGCTACAGATTTGGCATCAAGGGGCTTAGACTTTCCAAGGGTAAATTGGGTTATACAAATGGATTGCCCAGAAGATGTAGAGACATACATCCACAGAGCTGGCAGGACAGCTAGAGGAGTGCTTGGTAAAGGAGAAGGCCTCCTCATGCTATTACCCCATGAAGAGAAATTTGTTGAGAGTTTAAAAAATAGTAAGATTCCAATTAACAAAATAGCCATTGATCCATCAAAAGTAGTTGCTCCACAACTTAAAATAGAAGCTCTATTATCTGACAACACTGAACTGAAGCAAACCGCACAAAGAGCATTTGTTTGCTACTTAAAGTCTATATTCTTAATGAAAAATAAAGATATATTTAAAGTTCAGCTTTTAGATACTGATGCTTATGCCAGATCACTGGGCTTAATTGTGCCACCAAGGATAAGATTCTTAGAGAAGTATCATAGGCAAAATCAATACAAAATAGATCAAGAATCCCAGGGCAGCAATATTATTGACAAACTTAAAGCTCGGGATGATGATGGGGCTGAAACAGATCAGAGTATTGAAGAAAACCCAGAAGGAAAAAAACAGCAAAAGAAAGAGATAATTAAAAAGAAAGCATTACCTAAATTTGACTTCCATAACAATATAGATAGTGATGAAGATGACTTTCTTCAAGTTAAAACTAAAAATATTCAAGTAGCTGAAGAGGTTTCAACTGCTGAGGAAACAACTTCTAGGAAGAAATCTAAACCATTAACAAAGGCAGCTGTTGCCAAGAAAATACTGAAAAAGAAGTTGAAAGTGAACACCAAAGTGACATTTAATGAGGAAGGACAAATTATAGAGGATGAAAAAAGAAATGTCAGATCTGATATAGCTAAACAATTTGCAAATGAGGACATTGGAGGAATTGACATTGAAAAAGCTAAAGAAGTTCTACAAGAAGAGGATAAATTTGATAAAATAAGATTTCGACAGAGGATAAAAGCAAAACATAAAGAAGAAAAAAGAAAACTAAAGAATAAAAAGAAAGATGAAGAAGGGGAAAAGGATGATTTTGGATCACAGTCAGAGTCTGACGGACCAGATCTATCATGGTTTCCTGATCCTGATAAGATTTATAGTAATGAGGATGGCAATAATGATAAGAGTAGTGATGTTGGCAGCAGTAGAAATGAAGATGACACTGATTTGGATCAGGGATCTTACAGTGAAGAAGAGAAGTATCACAGACCTCAAAAAAGGAAACTGGTAGAAAGCAAAGGTATCCCTCAGGAAAGCATAGCACCTCGTAAGGTTAAAAAGATTCAAGACATATCAGCTTCATTATCTGTATCGGAAGTTGAAGCACTTGCTATGCATTTGTTGAAGAGCAAGAAAACGCTTTGA

Protein

MKQEEKDPKAQRGRKKVLLYKPRKKKSFEEDAAIKYLQGQYEKINPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKRMDQINILICTPGRLLQHMDENPLFDCSHLQIVVLDEADRCLDMGFETTMNAIIENLPPQRQTLLFSATQTKSVKDLARLSLSFPTYVAPHEQAATVTPEALQQSYITCEIDEKIGILWSFIRNHLKQKVLVFMATCKQVKYTYDLFCKLRPGVSLLALYGTLHQEKREKIYNEFCRKSNVVLFATDLASRGLDFPRVNWVIQMDCPEDVETYIHRAGRTARGVLGKGEGLLMLLPHEEKFVESLKNSKIPINKIAIDPSKVVAPQLKIEALLSDNTELKQTAQRAFVCYLKSIFLMKNKDIFKVQLLDTDAYARSLGLIVPPRIRFLEKYHRQNQYKIDQESQGSNIIDKLKARDDDGAETDQSIEENPEGKKQQKKEIIKKKALPKFDFHNNIDSDEDDFLQVKTKNIQVAEEVSTAEETTSRKKSKPLTKAAVAKKILKKKLKVNTKVTFNEEGQIIEDEKRNVRSDIAKQFANEDIGGIDIEKAKEVLQEEDKFDKIRFRQRIKAKHKEEKRKLKNKKKDEEGEKDDFGSQSESDGPDLSWFPDPDKIYSNEDGNNDKSSDVGSSRNEDDTDLDQGSYSEEEKYHRPQKRKLVESKGIPQESIAPRKVKKIQDISASLSVSEVEALAMHLLKSKKTL

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Similarity

Belongs to the DEAD box helicase family.

Uniprot

A0A0N1ICD0   A0A2A4K255   A0A194QE93   A0A0L7L420   A0A212FHS3   A0A2H1VUX7   + More
A0A195C789   A0A195FJ16   E1ZZ10   A0A151I4V4   A0A158NU62   F4WK46   K7J3R2   A0A2J7RNQ1   A0A195DJP8   A0A067RS66   A0A151WZI1   A0A336MAU9   A0A026X045   A0A3L8DU41   E2BYS1   A0A1I8NY30   A0A1B0A2U1   N6T2G3   A0A1A9W959   A0A154PTB4   A0A0L0CES9   A0A1B0BAY5   A0A1Y1JXI0   D6WA49   A0A1A9URI3   A0A1A9YJB7   A0A1B0D4Z2   A0A0A1XJC3   A0A034W1Q2   W8CB06   A0A0K8TVT4   A0A0M9A4B4   A0A1D2N5J4   R4G8Z1   A0A1B6KQB4   E9G7U6   A0A1E1X323   B4L5E0   A0A0V0G7Y3   A0A0A9VZ79   A0A2R5LNJ2   A0A1J1J1F5  

EC Number

3.6.4.13

Pubmed

26354079    26227816    22118469    20798317    21347285    21719571    + More
20075255    24845553    24508170    30249741    23537049    26108605    28004739    18362917    19820115    25830018    25348373    24495485    27289101    21292972    28503490    17994087    25401762   

EMBL

KQ460973    KPJ10099.1    NWSH01000235    PCG78139.1    KQ459144    KPJ03739.1    + More
JTDY01003069    KOB70207.1    AGBW02008466    OWR53276.1    ODYU01004593    SOQ44633.1    KQ978143    KYM96739.1    KQ981522    KYN40655.1    GL435250    EFN73577.1    KQ976445    KYM86035.1    ADTU01026248    GL888193    EGI65418.1    NEVH01002149    PNF42448.1    KQ980794    KYN13076.1    KK852498    KDR22644.1    KQ982638    KYQ53279.1    UFQT01000832    SSX27464.1    KK107054    EZA61622.1    QOIP01000004    RLU23957.1    GL451506    EFN79171.1    APGK01055130    KB741259    ENN71733.1    KQ435095    KZC14634.1    JRES01000594    KNC29989.1    JXJN01011213    GEZM01100269    JAV52928.1    KQ971312    EEZ99276.2    AJVK01011670    GBXI01003240    JAD11052.1    GAKP01010705    JAC48247.1    GAMC01000879    JAC05677.1    GDHF01033938    JAI18376.1    KQ435759    KOX75663.1    LJIJ01000200    ODN00549.1    GAHY01000132    JAA77378.1    GEBQ01026341    JAT13636.1    GL732534    EFX84542.1    GFAC01005752    JAT93436.1    CH933811    EDW06399.1    GECL01002008    JAP04116.1    GBHO01045684    JAF97919.1    GGLE01006980    MBY11106.1    CVRI01000066    CRL06371.1   

Proteomes

UP000053240    UP000218220    UP000053268    UP000037510    UP000007151    UP000078542    + More
UP000078541    UP000000311    UP000078540    UP000005205    UP000007755    UP000002358    UP000235965    UP000078492    UP000027135    UP000075809    UP000053097    UP000279307    UP000008237    UP000095300    UP000092445    UP000019118    UP000091820    UP000076502    UP000037069    UP000092460    UP000007266    UP000078200    UP000092443    UP000092462    UP000053105    UP000094527    UP000000305    UP000009192    UP000183832   

Pfam

PF13959   DUF4217        + More
PF00271   Helicase_C
PF00270   DEAD

Interpro

IPR000629   RNA-helicase_DEAD-box_CS        + More
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR025313   DUF4217       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

A0A0N1ICD0   A0A2A4K255   A0A194QE93   A0A0L7L420   A0A212FHS3   A0A2H1VUX7   + More
A0A195C789   A0A195FJ16   E1ZZ10   A0A151I4V4   A0A158NU62   F4WK46   K7J3R2   A0A2J7RNQ1   A0A195DJP8   A0A067RS66   A0A151WZI1   A0A336MAU9   A0A026X045   A0A3L8DU41   E2BYS1   A0A1I8NY30   A0A1B0A2U1   N6T2G3   A0A1A9W959   A0A154PTB4   A0A0L0CES9   A0A1B0BAY5   A0A1Y1JXI0   D6WA49   A0A1A9URI3   A0A1A9YJB7   A0A1B0D4Z2   A0A0A1XJC3   A0A034W1Q2   W8CB06   A0A0K8TVT4   A0A0M9A4B4   A0A1D2N5J4   R4G8Z1   A0A1B6KQB4   E9G7U6   A0A1E1X323   B4L5E0   A0A0V0G7Y3   A0A0A9VZ79   A0A2R5LNJ2   A0A1J1J1F5  

PDB

6EM5     E-value=1.46863e-94,     Score=887

KEGG

101736290    K14776 ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0003723   GO:0004386   GO:0005524   GO:0003676   GO:0005856   GO:0016311   GO:0016791   GO:0007166   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

Length:

808

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03078

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00171

outside

1  -  808

 

 

Pi

260.471202

Theta

214.45709

Tajima's D

0.414607

CLR

0.272325

CSRT

0.488925553722314

Interpretation

Uncertain