Gene

KWMTBOMO13994

Pre Gene Modal

BGIBMGA011341

Annotation

PREDICTED:_syntaxin-binding_protein_5_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr23(+):15620272-15628088      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.782

CDS

ATGATGATCAGCCTGCCGGAGGCCGACCTGAGGCACACGCAGCCGGTAGTCGTCTCCACAAGTGGAGGTCCCATATTTAGATTAAGAGGTTCCATACTGACGATGTCATTCCTCGACTGCAATGGTGCTTTAATTCCTTATTCATATGAAAGTTGGAAAGACGACAGTAAAGATGTTCGTGAGCGTCGGGAACGAACACCCACTAAGCAGAGTTCTTCAAGTAGTGGCAGTAGAATGAGCCCGACTCCCGGCCCCACGGAGTGCTCCTCCACAGTGGGCGACAGGCAGTTCGTAGTGATCGCCTCCGAGAAGCAGGCCAGGGTGGTGGCCTTGCCCAGTCAAAACTGTGTTTATAGACAACAAATTGTTGAAACTGATTTTATCGTTAAAGCTGAAATCGTTAGCTTGAAAGATAGTGTTTGCTTGGTCAATTACTTGTCAACCGGGCACCTGGCGGCGTACAGTCTGCCCTCACTGCGGCCTCTCATCGACGTCGACTTCCTCCCTCTCACCGAACTCAGCTTCCAGACACAGTCCAAACAGAGGGGTATCGTAGACCCAATGCTGAGTATTTGGGGCCAACAGCTCATTGTAAACGAGGACACCGATCAGATAGCGAAGACGTTCTGCTTCAGTAACCGCGGGCACGGCCTGTACCTCGCTTCGCCTTCCGAAATACAGAAGTTCACGATCGACGCTGAGTTCTGCCAACAATTGAACGAAATGTTGGGAGAAGTATTCTTGGCGCGCGACATGCCGGAGCCGCCGAAGGAGAGCTTCTTCAGGGGACTTTTCGGTGGAGGAGCGAGACCTCTTGATCGAGAGGAGCTTTTCGGGGAAAGCAGTGGAAAGGCCAGTCGCACCGTCGCCAAGCACATCCCGGGGCCAGCCTCAGGCTTGGACCAGCTCGGAGTCCGGGCCTCCACCGCTGCCAGCGAGGTCTCGCGCGCTCACCAGATGGTCGTGGAGCGCGGAGACAAGTTGTCGCAGCTCGAGGACCGCACCGAGCGGATGCACTCGCAGGCCGCCGAGTTCTCCTCCTCCGCGCACCAGCTCATGCTCAAGTACAAGGACAAGAAATGGTACCAGCTGTGA

Protein

MMISLPEADLRHTQPVVVSTSGGPIFRLRGSILTMSFLDCNGALIPYSYESWKDDSKDVRERRERTPTKQSSSSSGSRMSPTPGPTECSSTVGDRQFVVIASEKQARVVALPSQNCVYRQQIVETDFIVKAEIVSLKDSVCLVNYLSTGHLAAYSLPSLRPLIDVDFLPLTELSFQTQSKQRGIVDPMLSIWGQQLIVNEDTDQIAKTFCFSNRGHGLYLASPSEIQKFTIDAEFCQQLNEMLGEVFLARDMPEPPKESFFRGLFGGGARPLDREELFGESSGKASRTVAKHIPGPASGLDQLGVRASTAASEVSRAHQMVVERGDKLSQLEDRTERMHSQAAEFSSSAHQLMLKYKDKKWYQL

Uniprot

H9JP87   A0A212FHR0   A0A2H1VJC6   A0A2A4K293   A0A0N0PB96   A0A194QFL3   + More
A0A1B6CZ80   W4VR65   A0A1B6CQ53   A0A3L8D4Y5   A0A139WN40   A0A1B6D2E5   V9I9N0   A0A2A3E798   A0A2J7PPT3   A0A2J7PPS3   A0A1B0CY24   A0A088A7M7   F4WAM0   E2B7M0   A0A158NPB1   A0A1Q3FYS0   A0A151WX22   A0A195AYI1   A0A195F8R5   A0A1Q3FYP2   K7J1H7   A0A2J7PPU5   E2AK15   A0A0L7R3F2   A0A2M4A1F0   Q174B3   A0A154PK40   A0A084VQC9   A0A0M8ZZR9   A0A0A1X3N2   W8AU87   F5HJT9   A0A0L7KXJ9   F5HJT8   A0A1B6LE59   A0A195DYT4   A0A182RHV3   A0A182X581   Q7PRW8   A0A182W4T4   A0A182I9Q5   A0A1A9W963   A0A1B6GVZ2   A0A182P7L8   A0A026VU24   A0A182FIJ1   A0A1B6C6I5   A0A1J1HRQ3   A0A0C9R9H7   T1PKJ5   W8B4N6   A0A232EKS1   W8BET4   A0A034VDH4   A0A1A9URJ0   T1P7V3   A0A0A1XH32   A0A034VBW4   J9JKR6   A0A1I8Q063   A0A310SHK2   A0A1I8Q049   A0A182QWE9   A0A1I8MY95   A0A2M4DP46   A0A1I8MY92   A0A1I8Q044   A0A1I8MY83   A0A2S2R9N6   A0A1B0BAY4   T1IAG2   A0A2J7PPV2   A0A2M4A134   A0A2M4A115   A0A2M3YYD1   A0A2M4CXW7   A0A182J7Y6   A0A023F534   A0A1I8Q059   A0A2J7PPU8   A0A1B6KJZ3   A0A226D8J4   A0A3Q0IVE7   A0A3B0K5H1   A0A3B0K5R3   A0A3B0K805   B4IGI1   A0A2M4CQM3   W5JLU2   A0A1I8Q047   A0A1I8MY89   Q86NY8   A0A2R7VTN1   A0A023FZ50  

Pubmed

19121390    22118469    26354079    30249741    18362917    19820115    + More
21719571    20798317    21347285    20075255    17510324    24438588    25830018    24495485    12364791    26227816    14747013    17210077    24508170    28648823    25348373    25315136    25474469    17994087    20920257    23761445   

EMBL

BABH01009660    BABH01009661    BABH01009662    BABH01009663    AGBW02008466    OWR53280.1    + More
ODYU01002694    SOQ40532.1    NWSH01000235    PCG78136.1    KQ460973    KPJ10095.1    KQ459144    KPJ03735.1    GEDC01018567    JAS18731.1    GANO01004111    JAB55760.1    GEDC01021778    JAS15520.1    QOIP01000014    RLU14908.1    KQ971312    KYB29277.1    GEDC01017426    JAS19872.1    JR036479    AEY57171.1    KZ288347    PBC27585.1    NEVH01022645    PNF18350.1    PNF18348.1    AJWK01035273    AJWK01035274    AJWK01035275    AJWK01035276    AJWK01035277    AJWK01035278    AJWK01035279    AJWK01035280    GL888050    EGI68778.1    GL446193    EFN88298.1    ADTU01022314    ADTU01022315    GFDL01002367    JAV32678.1    KQ982668    KYQ52489.1    KQ976703    KYM77100.1    KQ981727    KYN36771.1    GFDL01002378    JAV32667.1    PNF18352.1    GL440135    EFN66225.1    KQ414663    KOC65415.1    GGFK01001147    MBW34468.1    CH477414    EAT41412.1    KQ434943    KZC12229.1    ATLV01015189    KE525003    KFB40173.1    KQ435789    KOX74435.1    GBXI01008348    JAD05944.1    GAMC01018297    JAB88258.1    AAAB01008846    EGK96549.1    JTDY01004784    KOB67766.1    EGK96550.1    GEBQ01017999    JAT21978.1    KQ980066    KYN17887.1    EAA06458.6    APCN01001018    GECZ01003179    JAS66590.1    KK107894    EZA47308.1    GEDC01028180    JAS09118.1    CVRI01000020    CRK90735.1    GBYB01004775    JAG74542.1    KA649229    AFP63858.1    GAMC01018300    GAMC01018299    JAB88256.1    NNAY01003719    OXU18960.1    GAMC01018298    GAMC01018296    JAB88259.1    GAKP01019349    GAKP01019347    JAC39603.1    KA644622    AFP59251.1    GBXI01004509    JAD09783.1    GAKP01019350    GAKP01019348    JAC39602.1    ABLF02034698    ABLF02034701    ABLF02034702    ABLF02056744    KQ763302    OAD55129.1    AXCN02001405    GGFL01015123    MBW79301.1    GGMS01017554    MBY86757.1    JXJN01011220    JXJN01011221    JXJN01011222    ACPB03010650    ACPB03010651    ACPB03010652    PNF18349.1    GGFK01001172    MBW34493.1    GGFK01001152    MBW34473.1    GGFM01000500    MBW21251.1    GGFL01005996    MBW70174.1    GBBI01002544    JAC16168.1    PNF18351.1    GEBQ01028200    JAT11777.1    LNIX01000028    OXA41872.1    OUUW01000021    SPP89464.1    SPP89465.1    SPP89463.1    CH480836    EDW48931.1    GGFL01003401    MBW67579.1    ADMH02001203    ETN63744.1    BT003569    AAO39573.1    KK854077    PTY10816.1    GBBL01001375    JAC25945.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000279307    + More
UP000007266    UP000242457    UP000235965    UP000092461    UP000005203    UP000007755    UP000008237    UP000005205    UP000075809    UP000078540    UP000078541    UP000002358    UP000000311    UP000053825    UP000008820    UP000076502    UP000030765    UP000053105    UP000007062    UP000037510    UP000078492    UP000075900    UP000076407    UP000075920    UP000075840    UP000091820    UP000075885    UP000053097    UP000069272    UP000183832    UP000215335    UP000078200    UP000007819    UP000095300    UP000075886    UP000095301    UP000092460    UP000015103    UP000075880    UP000198287    UP000079169    UP000268350    UP000001292    UP000000673   

PRIDE

H9JP87    Q86NY8   

Pfam

PF00957   Synaptobrevin        + More
PF08366   LLGL
PF00400   WD40
PF08596   Lgl_C
PF01556   DnaJ_C
PF00685   Sulfotransfer_1
PF00684   DnaJ_CXXCXGXG
PF00226   DnaJ
PF00246   Peptidase_M14

Interpro

IPR001388   Synaptobrevin        + More
IPR013577   LLGL2       
IPR000664   Lethal2_giant       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR013905   Lgl_C_dom       
IPR011048   Haem_d1_sf       
IPR002939   DnaJ_C       
IPR012724   DnaJ       
IPR018253   DnaJ_domain_CS       
IPR001305   HSP_DnaJ_Cys-rich_dom       
IPR036869   J_dom_sf       
IPR000863   Sulfotransferase_dom       
IPR027417   P-loop_NTPase       
IPR008971   HSP40/DnaJ_pept-bd       
IPR001623   DnaJ_domain       
IPR036410   HSP_DnaJ_Cys-rich_dom_sf       
IPR017986   WD40_repeat_dom       
IPR000834   Peptidase_M14       
IPR008969   CarboxyPept-like_regulatory       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF51004   SSF51004       
SSF46565   SSF46565       
SSF49493   SSF49493       
SSF57938   SSF57938       
SSF52540   SSF52540       
SSF49464   SSF49464       

Gene 3D

2.130.10.10     1.10.287.110    

CDD

cd10719  DnaJ_zf
cd06257  DnaJ

ProteinModelPortal

H9JP87   A0A212FHR0   A0A2H1VJC6   A0A2A4K293   A0A0N0PB96   A0A194QFL3   + More
A0A1B6CZ80   W4VR65   A0A1B6CQ53   A0A3L8D4Y5   A0A139WN40   A0A1B6D2E5   V9I9N0   A0A2A3E798   A0A2J7PPT3   A0A2J7PPS3   A0A1B0CY24   A0A088A7M7   F4WAM0   E2B7M0   A0A158NPB1   A0A1Q3FYS0   A0A151WX22   A0A195AYI1   A0A195F8R5   A0A1Q3FYP2   K7J1H7   A0A2J7PPU5   E2AK15   A0A0L7R3F2   A0A2M4A1F0   Q174B3   A0A154PK40   A0A084VQC9   A0A0M8ZZR9   A0A0A1X3N2   W8AU87   F5HJT9   A0A0L7KXJ9   F5HJT8   A0A1B6LE59   A0A195DYT4   A0A182RHV3   A0A182X581   Q7PRW8   A0A182W4T4   A0A182I9Q5   A0A1A9W963   A0A1B6GVZ2   A0A182P7L8   A0A026VU24   A0A182FIJ1   A0A1B6C6I5   A0A1J1HRQ3   A0A0C9R9H7   T1PKJ5   W8B4N6   A0A232EKS1   W8BET4   A0A034VDH4   A0A1A9URJ0   T1P7V3   A0A0A1XH32   A0A034VBW4   J9JKR6   A0A1I8Q063   A0A310SHK2   A0A1I8Q049   A0A182QWE9   A0A1I8MY95   A0A2M4DP46   A0A1I8MY92   A0A1I8Q044   A0A1I8MY83   A0A2S2R9N6   A0A1B0BAY4   T1IAG2   A0A2J7PPV2   A0A2M4A134   A0A2M4A115   A0A2M3YYD1   A0A2M4CXW7   A0A182J7Y6   A0A023F534   A0A1I8Q059   A0A2J7PPU8   A0A1B6KJZ3   A0A226D8J4   A0A3Q0IVE7   A0A3B0K5H1   A0A3B0K5R3   A0A3B0K805   B4IGI1   A0A2M4CQM3   W5JLU2   A0A1I8Q047   A0A1I8MY89   Q86NY8   A0A2R7VTN1   A0A023FZ50  

PDB

1URQ     E-value=4.24134e-07,     Score=129

KEGG

101736018    K08518 syntaxin-binding protein 5 | (RefSeq) syntaxin-binding protein 5

GO

GO:0016021   GO:0016192   GO:0016020   GO:0005737   GO:0005096   GO:0005886   GO:0017157   GO:0031201   GO:0019905   GO:0045159   GO:0017137   GO:0046872   GO:0031072   GO:0006457   GO:0005524   GO:0009408   GO:0008146   GO:0051082   GO:0004181   GO:0008270   GO:0006887   GO:0006893   GO:1900073   GO:0007269   GO:0007163   GO:0000149   GO:0016082   GO:0016079   GO:0008021   GO:0031594   GO:0007616   GO:0005856   GO:0016311   GO:0016791   GO:0007166   GO:0004713   GO:0016491   GO:0015930  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0114

Exp number, first 60 AAs:

0.00895

Total prob of N-in:

0.00330

outside

1  -  364

 

 

Pi

226.995427

Theta

210.946786

Tajima's D

0.249108

CLR

1.384373

CSRT

0.437678116094195

Interpretation

Uncertain