Gene

KWMTBOMO13993

Pre Gene Modal

BGIBMGA011340

Annotation

PREDICTED:_syntaxin-binding_protein_5_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr23(+):15557962-15618665      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.887

CDS

ATGGACAGTGTGGTGCTACCTACGTTCCGGCACGGGTTCCCGTTTTCCCCGACGGCTCTCGCCTGGGATCCGATACAGAAGCTGCTCGCCATCGGGGACAAAACTGGAAACTTGAGAATACTGGGCGGGCCGGGCGTCGACGCGCACGTGCGCCACGACGTCGGCGAGGCGGTGCTCCACGCCAAGTTCCTGATCAACGAGGGGGCCCTCGTCACGGTCACGGCCGACGACCAGCTGCACCTCTGGACCTTCAGGCAGAAGTCGCCCCAGCGCCTGCAGTCCCTCAAATTTCAGAGAGAAAGAGTGACCTGCCTGCATCTGCCGCTGCAGTCGAAGTGGGTCCACGTCGGCACGGAGCGCGGCAACGTCCACGTCGTTAACGTGGAAACCTTCGCGCTCTCCGGATACGTCATCAATTGGAACAAAGCCATTGAAGTTACGAGATCGAATCACCCCGGGGCCGTTGTCGACATCAGCGAGAATCCACTTGACGCTAGTAAATTACTGATAGCTTTTGAATCGGGTCTACTGGTGGTATGGGACCTCCGCGCTCGCACCGCCGAGTGGCGGGGAGCCCTGGGGACCGGGGGGCCCGCCGACGGGGTCAGGGCCGCCGCCTGGCAACACGACGGTAAACTAATGACTGCTCACATCGACGGAGCCCTGGCGACATGGACTACGAGGGGACCGAGACCTTCTTCCGTTTCTTATCCTCATGCGAAAGCAACCAAAGACGGTAAATTGGAGACCTGCAAACCTATACACAGACTTGAATGGAAAACTTCAAAAACAGGTGAAAGCTTGGTGATATTCAGCGGTGGGTTGCCGACAGATAAGGCCGGGAAAACGCACAGCATCACAGTCCTCAACGGAAAGAGCACTACCGTGCTAGAGATGGAGCATAGCGTCGTTGACTTCGTAACCTTATGCGAGACTCCCCACACTGCCGACTACCAAGAACCGTACGCGATAGTGGTGCTGCTCCAGAACGACCTGGTGGTTATAGACCTGCTGTCTCCAGGATACCCCTGCTTCGAAAACCCCTACCCTATGGACATTCATGAGTCTCCCGTCACATGCTGTTCTTACTTCGCTGATTGTCCCTCCGATTTGATCCCCGCGTTCTACTCAGTGGGCAGGCAGGGTAACAAGAAGGTAGCAGGGTTTAGTGAAAAGCTGTGGCCCATCAACGGTGGAGAGTGGGCACCCGCCTCTTGCTCATACAGCGAAATTATACTCACCGGGCACGCGGACGGTAGTGTCAAGTTCTGGGACGCGAGTGCGGGTACTTTACAGATCTTGTACAAACTGAAATGTTCTAAAGTGTTCGAGCGCGGGGGGGTGGCGGGCGGCGGGGCGGCGGGCGAGGAGAGCCCGGTGGCGGCGCAGCAGCTGGCGCTCTGTGCGGAGTCGCGGCGCCTCGCGGTGGCGCTCCCGCACGGACACGTGCTGCTCTTCAAGTTCCGCAAGACGGAGACGCACGGAGAGACACACGTTATAGAAGTCCCTATGATCACGGACACGCTGGAAGAGGAAACGTCTCCGGAGGCCGAGGGCGGGAGGTCCATGTCGTTCAGTCGAGGAGCGGACTCTGTAGAAGGAGAAAATAGAAGGTCTGGCGTGTGGGGCGGCTGGTCGTCACTGCGCGTACGCGGCGCCAGCGGCACTGGGGGCGCGCGGCGTGCTGCGGGGTTCCAGCCCGCACTCGTGGCGCTGCAGCCCGGCCCGCCCCACGCCGTCACCGCACTCACGCTCAATTCTTCCTACGGACTTATGGCGTGGGGCGGGGATCGCGGGGTGGTGGTGGTGGACATGTCCCGGCGGTGCGTGGTGTCGGCGCTGTGCACGGCCGCGCTGTACCACGCGCCGCGACACACAGAGAGACAGCGGTCGCCCAGCCTCGACCAGGCGGAGGAGACGCCGCGGCCCTCGCCCGCGCTCAGCCCCGAGGCGCCTGAGGAGGCCGCACTGCCCCCGTTGCCGCTCGAGGAGAAACCTAAGCTCGATCCGCGCCGGAAGTCCACCTCCTGGAAGAACTTCAACCTCAAGCGACAGCTCTCTAAGGTCGACCTCAAGTTCAAGGCCGCCTTTGCAGTTCCCACCGAGAACAACTTGGAAGAGACGGTCGCAGAAAAGAGCACTTCTCAATTTTATTGCGAAGCGACCGATAAAACCGACGCCGCGGTCGAACCTAACGCGGAGTCACCTGAACTCGACGATAACAAGACTGTAGTGAACGAAGAGGACAAGAGTCAACTATCTTCACCGCTGCGGGTGTGCTCCGACGTGTTCGAAAGAATGCATAAGGAACTACAGGAAAAGAGGTCCTCTGATGTTTATGATAGGATGCACAAAGAGCTACAAGAACGGTGGAAGGACAAGGAAGCCAACGAACCTGCTGTCTCCCCCGACGTCTCTCCCGTTGTCGAAGAAGAGAAGGCAACGCGACCCGACAACCTACCTTTATTCGAAGAAGACGGAAGGCCGACCAGACCGCCTCGCCAAAAGGGAAAGATCAAAAAAGAGGATGTCGAAAAGAAGGATCAGCGAGACCAAAGGCTGCTGTCGGTGCCAAATATTAAGTACAGTAAGCAGGAGGGTGCGAAGGAGACGCGACGCAAGCAGCCCTCCAGCCAGCAGGCGTCGTTCGCCGGCAACCTGATGCGGCGCTTTAGACAGTTAGTAGCGGCCCTGTGCCCGCACAGAGAAGCCGAGGGCCCGTCCGCCGAGCAGGTCGTCGAGCTGCCCCGCGCGCTGGACTTTATAGATTTGCAGAAGATGTCTGCCCGTCCACAACTGCTTCGTATTAGCGACGTTGTTGAGGCAGTATTCAATGAGTGA

Protein

MDSVVLPTFRHGFPFSPTALAWDPIQKLLAIGDKTGNLRILGGPGVDAHVRHDVGEAVLHAKFLINEGALVTVTADDQLHLWTFRQKSPQRLQSLKFQRERVTCLHLPLQSKWVHVGTERGNVHVVNVETFALSGYVINWNKAIEVTRSNHPGAVVDISENPLDASKLLIAFESGLLVVWDLRARTAEWRGALGTGGPADGVRAAAWQHDGKLMTAHIDGALATWTTRGPRPSSVSYPHAKATKDGKLETCKPIHRLEWKTSKTGESLVIFSGGLPTDKAGKTHSITVLNGKSTTVLEMEHSVVDFVTLCETPHTADYQEPYAIVVLLQNDLVVIDLLSPGYPCFENPYPMDIHESPVTCCSYFADCPSDLIPAFYSVGRQGNKKVAGFSEKLWPINGGEWAPASCSYSEIILTGHADGSVKFWDASAGTLQILYKLKCSKVFERGGVAGGGAAGEESPVAAQQLALCAESRRLAVALPHGHVLLFKFRKTETHGETHVIEVPMITDTLEEETSPEAEGGRSMSFSRGADSVEGENRRSGVWGGWSSLRVRGASGTGGARRAAGFQPALVALQPGPPHAVTALTLNSSYGLMAWGGDRGVVVVDMSRRCVVSALCTAALYHAPRHTERQRSPSLDQAEETPRPSPALSPEAPEEAALPPLPLEEKPKLDPRRKSTSWKNFNLKRQLSKVDLKFKAAFAVPTENNLEETVAEKSTSQFYCEATDKTDAAVEPNAESPELDDNKTVVNEEDKSQLSSPLRVCSDVFERMHKELQEKRSSDVYDRMHKELQERWKDKEANEPAVSPDVSPVVEEEKATRPDNLPLFEEDGRPTRPPRQKGKIKKEDVEKKDQRDQRLLSVPNIKYSKQEGAKETRRKQPSSQQASFAGNLMRRFRQLVAALCPHREAEGPSAEQVVELPRALDFIDLQKMSARPQLLRISDVVEAVFNE

Uniprot

H9JP86   A0A194QFL3   A0A212FHR0   A0A139WN39   A0A026VU24   E2AK15   + More
A0A0C9R9H7   A0A195DYT4   A0A158NPB1   A0A195F8R5   A0A151WX22   A0A195AYI1   A0A034VBW4   A0A1B6K4K9   A0A0A1XH32   A0A0A1XRI2   E2B7M0   W8BET4   A0A1I8Q059   A0A023F534   A0A1I8Q044   A0A1I8Q047   A0A336M0N3   A0A336MCQ5   A0A1J1HRQ3   A0A1A9URJ9   A0A1B0A2U7   A0A0A9Z829   A0A1I8MY89   A0A1I8MY83   A0A023EWD3   A0A0A9Z9N2  

Pubmed

19121390    26354079    22118469    18362917    19820115    24508170    + More
20798317    21347285    25348373    25830018    24495485    25474469    25401762    25315136    24945155   

EMBL

BABH01009659    KQ459144    KPJ03735.1    AGBW02008466    OWR53280.1    KQ971312    + More
KYB29276.1    KK107894    EZA47308.1    GL440135    EFN66225.1    GBYB01004775    JAG74542.1    KQ980066    KYN17887.1    ADTU01022314    ADTU01022315    KQ981727    KYN36771.1    KQ982668    KYQ52489.1    KQ976703    KYM77100.1    GAKP01019350    GAKP01019348    JAC39602.1    GECU01001321    JAT06386.1    GBXI01004509    JAD09783.1    GBXI01000787    JAD13505.1    GL446193    EFN88298.1    GAMC01018298    GAMC01018296    JAB88259.1    GBBI01002544    JAC16168.1    UFQT01000384    SSX23805.1    SSX23808.1    CVRI01000020    CRK90735.1    GBHO01003543    JAG40061.1    GAPW01000043    JAC13555.1    GBHO01003541    JAG40063.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000007266    UP000053097    UP000000311    + More
UP000078492    UP000005205    UP000078541    UP000075809    UP000078540    UP000008237    UP000095300    UP000183832    UP000078200    UP000092445    UP000095301   

PRIDE

H9JP86   

Pfam

PF08366   LLGL        + More
PF00957   Synaptobrevin
PF00400   WD40
PF08596   Lgl_C

Interpro

IPR013577   LLGL2        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR000664   Lethal2_giant       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR001388   Synaptobrevin       
IPR011048   Haem_d1_sf       
IPR017986   WD40_repeat_dom       
IPR013905   Lgl_C_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF51004   SSF51004       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JP86   A0A194QFL3   A0A212FHR0   A0A139WN39   A0A026VU24   E2AK15   + More
A0A0C9R9H7   A0A195DYT4   A0A158NPB1   A0A195F8R5   A0A151WX22   A0A195AYI1   A0A034VBW4   A0A1B6K4K9   A0A0A1XH32   A0A0A1XRI2   E2B7M0   W8BET4   A0A1I8Q059   A0A023F534   A0A1I8Q044   A0A1I8Q047   A0A336M0N3   A0A336MCQ5   A0A1J1HRQ3   A0A1A9URJ9   A0A1B0A2U7   A0A0A9Z829   A0A1I8MY89   A0A1I8MY83   A0A023EWD3   A0A0A9Z9N2  

PDB

6N8S     E-value=2.08386e-59,     Score=584

KEGG

101736018    K08518 syntaxin-binding protein 5 | (RefSeq) syntaxin-binding protein 5

GO

GO:0016192   GO:0016021   GO:0005096   GO:0005737   GO:0019905   GO:0045159   GO:0031201   GO:0017137   GO:0017157   GO:0005886   GO:0005515   GO:0006779   GO:0005856   GO:0016311   GO:0016791   GO:0007166   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

Length:

946

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00343000000000001

Exp number, first 60 AAs:

0.00128

Total prob of N-in:

0.00015

outside

1  -  946

 

 

Pi

223.036247

Theta

191.212536

Tajima's D

0.751781

CLR

0.350179

CSRT

0.589220538973051

Interpretation

Uncertain