SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13979  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011272
Annotation
hypothetical_protein_AND_009492_[Anopheles_darlingi]
Location
Bomo_Chr23(-):15239176-15243776      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.199
 

Sequence

CDS
ATGCCGCAGAACGAATATATTGAGCGCCATCAAAAGCTTTACGGTAGACGGCTAGATTATGAGGAGAGAAAACGGAAGCGTGAAGCTCGTGAGCCTCATAAACGCGCTGAAAAGGCGCGCAAACTCCGCGGTATCAAAGCTAAAATATTCAATAAGGAACGCCGCAATGAAAAGATTCAGATGAAAAAGAAAATCAAAGCGCACGAAGAGAAGAATGTCAAACAGAACACAGAGAAGGTCGCCGAAGGTGCCCTGCCTGTTTATCTACTGGACAGGGATGTTCAATCTAGGGCTAAAGTATTATCTAACATGATAAAACAAAAGCGTAAAGAGAAAGCTGGAAAATGGGATGTCCCCATCCCTAAAGTGAGAGCTCAAGCGGACGCAGAAGTATTCAAAGTCCTAAAATCGGGTAAATCAAAAAGAAAAGCTTGGAAACGCATGGTCACCAAAGTAACATTTGTAGGAGAGAACTTTACTCGTAAACCTCCTAAATTTGAACGATTCATCAGACCTATGGCACTGAGGTTCAAGAAGGCCCATGTCACACATCCTGAACTAAAAGCAACTTTCTGTTTACCTATAATAGGAGTCAAGAAGAACCCAAGTTCACAAATGTATACAAGCTTAGGTGTCATAACTAAGGGTACAGTGATTGAAGTTAATATTTCTGAGCTGGGTCTTGTCACGCAGGCTGGTAAAGTTGTGTGGGGTAAATACGCTCAAGTCACGAATAATCCAGAGAATGATGGCTGCATTAATGCTGTGCTGAGAGTGAAGATGCAAATTTTCGTAAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCGTCAGATACCATCGAGAATGTGAAAGCTAAAATTCAAGACAAAGAGGGAATCCCTCCCAATCAACAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCCTCTCGGACTACAATATCCAGAAGGAATCCACCCTCCACCTGGTGTTGAGGCTTCGTGGTGGCGCTAAGAAACGCAAGAAGAAGAATTACTCCACACCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAACTAGCCGTCCTCAGGTTTTACAAGGTCGACGAGAACGGTAAGATCCACCGTCTGCGGCGCGAGTGCACGGGCGAGCAGTGCGGCGCCGGAGTGTTCATGGCGGTGATGGAGGACCGTCACTACTGCGGGAAGTGTCACAGCACGATGGTCTTCAAAGACGACGACAAATAA
Protein
MPQNEYIERHQKLYGRRLDYEERKRKREAREPHKRAEKARKLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYSTPKKIKHKKKKVKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDDK

Summary

Uniprot
A0A212FHW0   A0A182TUI2   W5J6B5   A0A1A9ZVP2   A0A182MP56   A0A232ES75   + More
A0A182SGG4   A0A0L0BQA5   A0A139WMZ6   A0A139WMW3   A0A1D2N322  
Pubmed
22118469    20920257    23761445    28648823    26108605    18362917    + More
19820115    27289101   
EMBL
AGBW02008465    OWR53318.1    ADMH02002110    ETN58928.1    AXCM01003104    NNAY01002492    + More
OXU21192.1    JRES01001540    KNC22168.1    KQ971312    KYB29360.1    KYB29359.1    LJIJ01000263    ODM99687.1   
Proteomes
UP000007151    UP000075902    UP000000673    UP000092445    UP000075883    UP000215335    + More
UP000075901    UP000037069    UP000007266    UP000094527   
Pfam
PF01599   Ribosomal_S27        + More
PF00240   ubiquitin
PF01201   Ribosomal_S8e
Interpro
IPR022309   Ribosomal_S8e/biogenesis_NSA2        + More
IPR029071   Ubiquitin-like_domsf       
IPR038582   S27a-like_sf       
IPR011332   Ribosomal_zn-bd       
IPR039411   NSA2_fam       
IPR000626   Ubiquitin_dom       
IPR019956   Ubiquitin       
IPR002906   Ribosomal_S27a       
IPR019954   Ubiquitin_CS       
SUPFAM
SSF57829   SSF57829        + More
SSF54236   SSF54236       
Gene 3D
2.20.25.660    
CDD
cd11381  NSA2
ProteinModelPortal
A0A212FHW0   A0A182TUI2   W5J6B5   A0A1A9ZVP2   A0A182MP56   A0A232ES75   + More
A0A182SGG4   A0A0L0BQA5   A0A139WMZ6   A0A139WMW3   A0A1D2N322  
PDB
6N8J     E-value=1.74207e-74,     Score=710

Ontologies

KEGG
693008    K14842 ribosome biogenesis protein NSA2 | (RefSeq) Tinp1; TGF beta-inducible nuclear protein 1
GO
GO:0005840   GO:0003735   GO:0006412   GO:0030687   GO:0005515   GO:0004888   GO:0007166   GO:0016020   GO:0004713   GO:0016491   GO:0015930  
PANTHER
PTHR12642  

Topology

Length:
415
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00287
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01391
outside
1  -  415
 
 

Population Genetic Test Statistics

Pi
212.414137
Theta
184.968972
Tajima's D
0.543647
CLR
0.474296
CSRT
0.526973651317434
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
27102218 NYSTPK 100.00 2e-13
26280517 RDVMACAQTGSGK 100.00 3e-09
25044914 RDYIHYIPK 100.00 3e-09
27102218 ECTGEQCGAGVFMAVMEDRHYCGK 100.00 3e-09
26822097 CHSTMVFKDDDK 100.00 2e-08
26280517 EASEHTNHFDPSGHSR 100.00 2e-08
25044914 ECQQIYFR 100.00 2e-08
27102218 CHSTMVFKDDDK 100.00 2e-08
28467696 ECTFTIQIPTGR 100.00 2e-08
28556443 NEMIAAITNR 100.00 0.002
26822097 VDGTDTIAVHNAVK 100.00 0.007
26280517 AVYAHFPINCVTTEGNSIIEIR 100.00 0.007
25044914 CHSTMVFK 100.00 0.007
27102218 FVVGGNWK 100.00 0.007
26280517 IQAIPAGIFASTPR 100.00 0.012
27102218 RECTGEQCGAGVFMAVMEDR 100.00 0.012
28467696 IQDKEGIPPDQQR 100.00 0.012
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