SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13976
Pre Gene Modal
BGIBMGA011332
Annotation
PREDICTED:_GRAM_domain-containing_protein_1B-like_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.93
 

Sequence

CDS
ATGTCTTCCTCGGAGGTAGAAAGTCGAAATATAACAATACAAATGCGAAAATCTGTGGAAAACCTGGTTCTATCTTCACAAGATGCAATAGGGCAGAGTATCAGTCAAGCTCTGAACTTTTCTGGAGTGATATCGCAGCACACGTCCCAACTCATACAGGACAGCAAAAACGTGTCCCGCGCGCCATCGCCCTCCCCTCGCAACTTTGAAAGCGCCACAGAAACTCTGGACAATGACAAGACCAGCGACTCCTCCCTCAACTTGCCGAGCCTCACAGGTGGAGATAATATCTCTGTCTCAAGCAATGAGGCGGTCACCGTTATCAGTTCGCCCTCACTCAAAACTGACAACTCCAAGACGTCGACGCCGAATCCTCGCGGCCCCGATGCCACCAGGACCAAGAAGAAGAGCTGGTACAACTCTCTGTACCCCACGTACAAGAACAAGCTGGACGACTTCAAGAGACTGTTCAAGGACTTGCCCGACGACGAGAGACTTATTGTGGACTACTCGTGCGCGCTACAGAAGGACATCCTGGCGCAGGGGCGGCTGTACGCGTCGCAGAACTACCTGTGCTTCTACGCGTACATCCTGGGCTGGGAGACCAGCCTCACTCTGCGGTGGAAGGACGTCACCGCCATCACCAAGGAGAAGACTGCTCTCGTCATACCCAATGCCATCCTGGTGTGCACGGACAAGGACAAGCACTTCCTCACGTCCATCTCCAGCAGGGACAAGGCCTACCTGATGCTGTTCCGGATCTGGCAGAACGCGCTCATGGACCAGCCGCTCACCAGCCACAAGATCTGGCAGTGGGTGCACAGCTGCTACGGCGAGGAGCTGGGCTTCAACTCCGACGAGGAGTACATGAGGGAGGGCGCCGACGACGCGGCAGCACCGCCCGACCTCGCCGATAAGGTATTTGTTTATGTACGCTTTTTTATTAGCTCTAACTTTGGTTAG
Protein
MSSSEVESRNITIQMRKSVENLVLSSQDAIGQSISQALNFSGVISQHTSQLIQDSKNVSRAPSPSPRNFESATETLDNDKTSDSSLNLPSLTGGDNISVSSNEAVTVISSPSLKTDNSKTSTPNPRGPDATRTKKKSWYNSLYPTYKNKLDDFKRLFKDLPDDERLIVDYSCALQKDILAQGRLYASQNYLCFYAYILGWETSLTLRWKDVTAITKEKTALVIPNAILVCTDKDKHFLTSISSRDKAYLMLFRIWQNALMDQPLTSHKIWQWVHSCYGEELGFNSDEEYMREGADDAAAPPDLADKVFVYVRFFISSNFG

Summary

Pfam
PF02893   GRAM        + More
PF16016   VASt
Interpro
IPR004182   GRAM        + More
IPR031968   VASt       
IPR011993   PH-like_dom_sf       
IPR040147   Ysp2/Lam4-like       
IPR016024   ARM-type_fold       
SUPFAM
SSF48371   SSF48371       
Gene 3D
PDB
5YQR     E-value=1.90256e-10,     Score=157

Ontologies

Topology

Length:
320
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.14093
Exp number, first 60 AAs:
0.00171
Total prob of N-in:
0.02931
outside
1  -  320
 
 

Population Genetic Test Statistics

Pi
166.347238
Theta
158.042694
Tajima's D
0.043099
CLR
1.318668
CSRT
0.381680915954202
Interpretation
Uncertain
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