Gene

KWMTBOMO13975  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011274

Annotation

PREDICTED:_pre-rRNA-processing_protein_TSR1_homolog_[Amyelois_transitella]

Location

Bomo_Chr23(-):15187528-15191916      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.052

CDS

ATGGCAGACGAAACAGTTTTCGATAAGAAAAAATCGCATCATGCAAAACGCGCTGGGCGTAAAGTCGAGAAGAAGAAGAACAAGAATAAAATAGACCAATCTAACCTAAGCGCTCGTCAGCGAAATCCTAAAGCTTTCGCCATCCAGAATGCTGTACGAGCTGAAAGACAATTCCGTCGGCGTGAAGACGTTATCTCCAAAAAACAGCACATCCCCCAAGTAGACAAGACGCCGCTGGAACCGCCTCCAGTTGTGGTCGCTATCGTAGGACCACCGCGCGTCGGTAAGACTACACTCATAAACAACTTGATTAAAAGCTTCATAAAAACAAATGTAACCAACACCGACGGTCCCATTACTATCGTCACGTCTAAAAAGCGCAGGATAACGTTGATAGAATGCAATAATGATGTAAATTCAATGATAGACATAGCCAAATGCGCTGATCTAGTGCTGCTCCTATGCGATGCTAGTTTTGGTTTCGAGATGGAGATATTTGAGTTCTTAAACATATGTCAGGTGCATGGAATGCCCAAGATAATGGGTGTGTTGACACATCTCGACATGATAAAGAACGCAAAGACATTAAAAACAACAAAGAAAACTCTAAAACACAGGTTTTGGACAGAAGTCCATCCCGGAGCCAAGCTGTTTTACCTCTCTGGTATAATCCATGGAGAATATCTGAGGAATGAAATAAAAAATCTTTCAAGATTTATCTCGGTAATGAAGTTCAGGCCTTTAAGCTGGAGAATGACCCATTCATATGTATTAGCTGATAGATTAGAAGATATAACAAGTCAGGAGGCAATAAGAAAAGATCCAAAAGTGAATAGAGATGTGGTGCTGTATGGCTACGTACGGGGTGTTCCCTTGATGAAAGAAAGCATGGTACATATTGCTGGTGTTGGTGACATGAAGATCAGTGAATTGTCATATTTACCTGATCCTTGCCCTCTACCAGGCAGTGAAAAAAAACGGCACCTAATGGAAAGAGAAAGACAAATCTATGCGCCATTCGCAGGAGTTGGCGGCATCGTATACGACAAGGATGCAGTATATATAGAACTGAAGGGCTCTCATTCACATAAACATGAAGATGAAGAGACAAATGAGAAGAAGGAGTTGCTGAAAAATGTTGTTGAAACTAAGGAAACTGTGGATGAACAGATGCAGGAATCTGGGCTTAAACTATTCAGTGGAGGGGCTGTTATTTATCCTGATATGATGAAGGACGATGAATATTTACAGCAGAACAAGAAAAATGATGAGTCTGAATCAGAAGCTGATTTAAGTGATTCAGATAATGATAGTGGGATAGAACAGAGTGCGAAACACGAAAAAACCAAGCTGCCCTGGGATAATGAATCTCAGTCTGAAGAGGAAGACAGTCAAGGTATAGATGCAGAAAACAAGGATGGCGATGAAAGTTTGGAATCCGATGAAGAAGTGGATAATGATGAAAATTTTGATACTAAATGTAAAGAGAAGCTAAGTGAAAAAGCCACTGAAGCATATTTTGAGAGACAAAAAACTTCAAAAAATATTATGAAACTTGTGTATGGAGGTTTTGAGATTGGTCACAAAACTATAGATCAGAATGAAGAAAAGGATAACAGTACTGATGACGAGGAGATCGGAGGCTTATTCAAGAAAGTTACAGATACTCAGAAGAAAAAACATAAAGAAAAAGAACACTTGGATCTAGATGAATGTTCATTTTTCTATGCTACAAATAAACCAAACTTAAAAGATTGGACAGCAGACTCAAATAAGACATTCTTGATTAATAGCTTTGTAACTGGAAAAAGATCAGCTGATGAGGATGCATCAGAGTTATTGAAGTTAGATGATGCTAGTGATGCTGAAGAAGATGAAGAAGTGTATGGAGATTTTGAAGATTTAGAAACTGGAGAGAAACACCAAGCTGATAAAGAGACGAAAGAAGCCAGTGGAAAACGTAAAGGTGAACCAACTAAAACAGAAATTTTGGAAAAGAAACTCAAATTGAAAGCCAAATTTGACTCGGAATATGATAACCCAGACGACCATAGAATTAAAGGCGATCATTCTTACTACGAAAATTTAAAAGCAGAAGCACTTAAGCAGTCAGAATTAAACAAATCTGTCTTTGAAAATTTGGAGCATGGTCTCAGAGTAGAGGTGGAAGGGTTTAGACCAGGACTGTACGTCAGGATGCTATTTAAAAACACGCCATCAGAGTTTGTGACGAATTTCGATGCAAGCTATCCAATATTAATAGGATCTCTGAACATGGCAGAACAAAACATAGGTTTCGTGTCTTGCAAAGTAAAAAAACATCGATGGTTCAAGAAAATTTTAAAAACAAATGATCCTCTTATTATATCTTTGGGTTGGAGAAGATTCCAGACTCTGCCAATCTATTCTAAAATTGAAGACGACTTGAAGCTTAGGTATTTAAAATACACACCGGAGCATGTCACATGTAACATGCATTTTTATGGTCCCATCACTCCACAGAACACTGGATTCCTAGCGTTACAAAGTGTTAACAATAACACAGACGAGATAAAACAAGTGGGATTCAGAATAGCAGCTACGGGAAGCGTTAACGAGATCAATAAATCAACTCAAATTGTAAAGAAACTTAAGTTAGTCGGTACTCCATTGAAGATATATAAGAAAACTGCATTCATCAAGGACATGTTCACTAGTACACTGGAAGTTGCGAAGTTCGAGGGAGCCAGGATCAAAACGGTATCCGGTATCAGAGGACAGATCAAGAAGGCGTTAAGCAAACCCGAAGGCGCGTTCCGGGCGACGTTCGAAGACAAAATACTCATGAGCGACATCGTATTCTGCAGGACCTGGTTCAAAGTGGACGTAACCAGATTCTATGCGCCAGTCGTGAACCTCCTGCTGCCGCCCGGCGACAAGAACGCGTGGCAGGGCATGAAAACTAAAGGACAGCTCAAACGAGAAAGAAACATTAAGAGTGACGCTACCAGAGACTCCATGTACACAGAAATACAGAGAGGTCCCAAAGTGTTCAAGCCATTAGTTATACCAAAAGCCCTCCAAAAAGGTCTACCGTACCGATTCAAACCAAAAGAGAAAGCCACAACACTTTCCGGGAATAATCCAAAGGATAAGTTCAAGGGCCGGGTGGCCGTCGTGAAGAGCCCCCACGAGCAGCAAGTGGCCAACGTCATGAAAATGTTGAAGACCAATTATCAGAAGAAGAAAGCGACCCAACGAGCGGCGACCGTAGACCGACTCCGCGCGCACAAGAAACTACAAGAAGCCGAGGAGTGGAAGAAGATCAAGCGACAGAAGGAACTCAAGAAGAAAATTTGTAGGCAGATCAGTAAAATGGGCAATAAAAAGAAAGCACAAATGTGA

Protein

MADETVFDKKKSHHAKRAGRKVEKKKNKNKIDQSNLSARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEPPPVVVAIVGPPRVGKTTLINNLIKSFIKTNVTNTDGPITIVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFEFLNICQVHGMPKIMGVLTHLDMIKNAKTLKTTKKTLKHRFWTEVHPGAKLFYLSGIIHGEYLRNEIKNLSRFISVMKFRPLSWRMTHSYVLADRLEDITSQEAIRKDPKVNRDVVLYGYVRGVPLMKESMVHIAGVGDMKISELSYLPDPCPLPGSEKKRHLMERERQIYAPFAGVGGIVYDKDAVYIELKGSHSHKHEDEETNEKKELLKNVVETKETVDEQMQESGLKLFSGGAVIYPDMMKDDEYLQQNKKNDESESEADLSDSDNDSGIEQSAKHEKTKLPWDNESQSEEEDSQGIDAENKDGDESLESDEEVDNDENFDTKCKEKLSEKATEAYFERQKTSKNIMKLVYGGFEIGHKTIDQNEEKDNSTDDEEIGGLFKKVTDTQKKKHKEKEHLDLDECSFFYATNKPNLKDWTADSNKTFLINSFVTGKRSADEDASELLKLDDASDAEEDEEVYGDFEDLETGEKHQADKETKEASGKRKGEPTKTEILEKKLKLKAKFDSEYDNPDDHRIKGDHSYYENLKAEALKQSELNKSVFENLEHGLRVEVEGFRPGLYVRMLFKNTPSEFVTNFDASYPILIGSLNMAEQNIGFVSCKVKKHRWFKKILKTNDPLIISLGWRRFQTLPIYSKIEDDLKLRYLKYTPEHVTCNMHFYGPITPQNTGFLALQSVNNNTDEIKQVGFRIAATGSVNEINKSTQIVKKLKLVGTPLKIYKKTAFIKDMFTSTLEVAKFEGARIKTVSGIRGQIKKALSKPEGAFRATFEDKILMSDIVFCRTWFKVDVTRFYAPVVNLLLPPGDKNAWQGMKTKGQLKRERNIKSDATRDSMYTEIQRGPKVFKPLVIPKALQKGLPYRFKPKEKATTLSGNNPKDKFKGRVAVVKSPHEQQVANVMKMLKTNYQKKKATQRAATVDRLRAHKKLQEAEEWKKIKRQKELKKKICRQISKMGNKKKAQM

Uniprot

H9JP20   A0A2H1VS36   A0A0N1PGG5   A0A194QHX6   A0A2A4J9U7   A0A0L7KQN7   + More
A0A212FHW3   A0A1E1W921   A0A0M3QWY2   A0A0K8UB36   A0A034V659   A0A0A1XFZ0   B4LHN4   Q29EX5   B4H5N4   B4IZL0   B4PJZ5   A0A336M1J5   B3M439   Q9VVC9   Q17F63   A0A1S4F559   A0A182M795   A0A084WRT8   A0A1A9V2W7   A0A1B0FJT3   A0A1B0CKX1   A0A1Q3G181   A0A0N0BBX6   A0A0L7QNT9   A0A195BS10   A0A310SEI4   A0A131YM21   L7M766   A0A3S3Q2L8   A0A0B7A613   A0A1W3JLG9  

Pubmed

19121390    26354079    26227816    22118469    25348373    25830018    + More
17994087    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17510324    24438588    26830274    25576852   

EMBL

BABH01009626    ODYU01004106    SOQ43629.1    KQ460880    KPJ11517.1    KQ458761    + More
KPJ05112.1    NWSH01002267    PCG68741.1    JTDY01007336    KOB65284.1    AGBW02008465    OWR53316.1    GDQN01007637    JAT83417.1    CP012525    ALC44919.1    GDHF01031886    GDHF01028749    JAI20428.1    JAI23565.1    GAKP01020948    JAC38004.1    GBXI01004426    JAD09866.1    CH940647    EDW69587.1    CH379070    EAL29934.2    CH479211    EDW33086.1    CH916366    EDV97785.1    CM000159    EDW94764.1    UFQT01000279    SSX22703.1    CH902618    EDV40401.1    AE014296    AY061447    AAF49383.1    AAL28995.1    CH477275    EAT45148.1    AXCM01002390    ATLV01026197    KE525407    KFB52932.1    CCAG010018347    AJWK01016685    GFDL01001487    JAV33558.1    KQ435969    KOX67872.1    KQ414843    KOC60307.1    KQ976417    KYM89817.1    KQ794714    OAD47009.1    GEDV01008939    JAP79618.1    GACK01005332    JAA59702.1    NCKU01001213    NCKU01001206    NCKU01000168    RWS12757.1    RWS12789.1    RWS16788.1    HACG01029232    CEK76097.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000037510    UP000007151    + More
UP000092553    UP000008792    UP000001819    UP000008744    UP000001070    UP000002282    UP000007801    UP000000803    UP000008820    UP000075883    UP000030765    UP000078200    UP000092444    UP000092461    UP000053105    UP000053825    UP000078540    UP000285301   

PRIDE

H9JP20    Q9VVC9    L7M766   

Pfam

PF08142   AARP2CN        + More
PF04950   RIBIOP_C
PF01926   MMR_HSR1

Interpro

IPR039761   Bms1/Tsr1        + More
IPR027417   P-loop_NTPase       
IPR037875   Bms1_N       
IPR030387   G_Bms1/Tsr1_dom       
IPR007034   BMS1_TSR1_C       
IPR012948   AARP2CN       
IPR006073   GTP_binding_domain       

SUPFAM

SSF52540   SSF52540       

CDD

cd01882  BMS1

ProteinModelPortal

H9JP20   A0A2H1VS36   A0A0N1PGG5   A0A194QHX6   A0A2A4J9U7   A0A0L7KQN7   + More
A0A212FHW3   A0A1E1W921   A0A0M3QWY2   A0A0K8UB36   A0A034V659   A0A0A1XFZ0   B4LHN4   Q29EX5   B4H5N4   B4IZL0   B4PJZ5   A0A336M1J5   B3M439   Q9VVC9   Q17F63   A0A1S4F559   A0A182M795   A0A084WRT8   A0A1A9V2W7   A0A1B0FJT3   A0A1B0CKX1   A0A1Q3G181   A0A0N0BBX6   A0A0L7QNT9   A0A195BS10   A0A310SEI4   A0A131YM21   L7M766   A0A3S3Q2L8   A0A0B7A613   A0A1W3JLG9  

PDB

5OQL     E-value=1.7395e-97,     Score=913

KEGG

101745253    K14569 ribosome biogenesis protein BMS1 | (RefSeq) ribosome biogenesis protein BMS1 homolog

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0005525   GO:0042254   GO:0005634   GO:0007165   GO:0006412   GO:0004888   GO:0007166   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR12858  

Length:

1127

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06183

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00265

outside

1  -  1127

 

 

Pi

212.149977

Theta

195.698422

Tajima's D

0.287258

CLR

0.642022

CSRT

0.451577421128944

Interpretation

Uncertain