Silkworm Genome Informatics Database

Gene

KWMTBOMO13974

Pre Gene Modal

BGIBMGA011331

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_liprin-alpha-1_[Bombyx_mori]

Location

Bomo_Chr23(+):15158707-15182997 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.879

CDS

ATGGAGTTCGCGGCCCTCACGAAGGAGTTGAATCAAGCGCGAGAACAGCTCCTAGAGAGGGAAGAAGAGATCTCCGAGCTCAAAGCGGAGAGAAACAATACCAGGTTACTGCTAGAGCATCTAGAATGTCTGGTGTCGCGACACGAGCGCTCGTTGCGCATGACGGTGGTGAAGAGGCAGGCGGCGGCACAGTCCGGGGTCTCGTCAGAGGTGGAGGTGCTCAAAGCTCTCAAGAGCTTATTCGAACATCACAAAGCTTTAGACGAAAAGGTTCGAGAACGACTACGCGTCGCGTTAGAGAGGAATACAGCCTTAGAGGAAGAATTGGCGTTAACCAAAGAAGAATTGCAGCAGTACAAGTCGTCGAGCGCGCAGGACAGCGAGAAGCCGAAGGAGAACGGGACCGCGCCGACCGGCTCCCCCGACCAGAATGGCGAGCAGCCGCAGACTAAGGAACAAACAGTGAACGGCGAAACGGAAAGCTGCCGGAAAATCACTGATCTACAAAACACGGTCGCCAAACAGTCCGCCGAACTCAGTTCGTGGCAGCGTCGCGTCGCGGAGCTGAACAACAAAGTGTCTGAACTCGAGGAGAGACTGTCCAAAGGGGAGAAGGAGCTCGTCAAGAAACAGGAGGAGTGCGTGAAGCTGCAGCGCGACCTGCGCGAGAACGTCGCCCAGAAAGAGGACCAGGAGGAGCGAATAACAACTTTAGAGAAGAGGTACCTTAACGCCCAGCGCGAGTCGACCTCACTGCACGACCTCAACGAGAAGCTGGAGCAAGAGCTGCAGCACAAACAGGCGCAGCTTAAGCTCCAGGAGGAGAAGATAGCCGCCATCGAGGAGAAACTGGAGTTGTCCACGCAGAAGCTCGCCCAGATGTCCTCGCTGCCGGAAATGGAAGAGCAGCTCAAAGCCAGAATGGAAGCCCTGAGCCAGGCGCAGGAGCGCCACGGCTCGGCCGAGGACAGGATCCAGCGGCTGGAGGCCAGTGTCGAGGAGAAGAACGCGGAGCTGGTGCGCCTCAACCAGCGCCTCCGCATGAACGAGGAGCACAACACGAGACTGTCGGCCACCGTCGACAAGCTGCTCTCCGAGTCAAACGACAGATTACAAGTCCACTTGAAAGAACGGATGCATGCGTTGGACGAGAAGAACGCCCTCACCCAGGAGCTGGAGAAGACTAGAAAGTACGCCGACGAGCTGATGGCGGAGAAGCAGGAGATCCTCAAGGAACTGGCCAAGTGGAGAATGGAGACTGAACAACTGAAGCGACAAATGCTGGAACAAGAGATAGCGTTTAACATACAGCAGACGGACGCGCTCACCCGCTCCCTGTCCCCCGGCGCCCCGCAGCCGCCCCAGGGACTCTTCGGAGCCAAGCTGGACGGCTCCTGGGAGAAGCTGCAGCAGGCGCACGTGCTGGCCAACGTACAGCAACAGTTCGACGTCTCCAGCGACGCGGAGAACGATGAATCCGACGGCGGCGTGGAGGGCGGACACACGGACGCCGCGGCCCTGGCGCTCATGCTGCAGGAGCAGCTCGACGCCATCAACACCGAGATAAGGCTCATACAGGAGGAGAAGCAAAGTACTGAAGCGCGCGCTGAAGAGCTGGAGTCCAGGGTCGGCAGCTACGAGCACATGAACGTGGTGTCGCGCCGCAGCGACTCTCCCCCGCCCGCCGCCTCCCCCTCGCGCCCCCACCTCGCGCCGCACCACAAGTTCCACACCTTGCAGCTGTGCGAGGAGAGCGCGGTGTCGCTGGGCGGGGTGGCCGCGGGGTCTGAAGGGGCGGAGTCTCCGCTGACGGCGCGCTCCCTGCGCCTGGAGCGGGCGGCGCGGGCGCTGCACGCCGAGCGGGATCGTCTGCGCGCACACTATCAACCGCCCTATGATTCGAGCGCGATGATGTCGACGAGCCTCGCCCGGATCCCCATGCACAGCTCGAGCCAGGAGTCCCTGGGGGCCGCCGCGGGACCGTGGGGCGGAGCGCCGCGCGGCGTCACGTCCGCCTCCTCCGCCGTCTCCATCGCCTCCATGCACCAGCAGAAGAAACGCGGCATCAAGAGCTCACTCGGGAGGCTGTTCAGTAAAAAGGAGAAGGGGGGATTACCGTGTCCGCAGGGGCAGGGGTCGCGCTCGCTGTCGTCCGCGTCGTCGCTGGGGCTGTCCTCCCTGGCCGACGACGCGCCCCCCTCCGACCTCGCCCACGTGCCGCTCCAGCACCAGGAGTACACCAGGGACCGCGACTACCGCCACGAGCTGCTGGGCGAGGCCATGCGGGCCGGCACGCCCTTCGCGCTGTGGAACGGGCCCACCGTGGTGGCGTGGCTGGAGCTGTGGGTGGGCATGCCGGCCTGGTACGTGGCCGCCTGCCGCGCCAACGTCAAGTCCGGCGCCATCATGTCCGCGCTCTCCGACCAGGAGATACAGCGGGAGATCGGCATCAGCAACCCGCTGCACCGGCTGAAGCTGCGCCTGGCCATCCAGGAGATGGTGTCGCTGACGTCACCGTCGGCGCCCCGGGGCACGGCCTGCGCCGCACTCGCCTTCGGGGACATGAACCACGAGTGGATCGGGAACGTGTGGTTGCCCTCGCTAGGTCTGCCGCAGTACAGAACTACCTTTATGGAGTGCCTGGTCGACGCCCGCATGCTGGAGCACCTCACCAAGCGGGACCTGCGGACACAGCTCAAGATGGTCGACAGCTTCCACAGGACGTCGTTGCACTTCGGCGTGGCGTGCCTGAAGCGCGTGGGGTACAGCGTGCGCGCGCTGGAGGAGCGGCGCCGGGCGGCCGAGGGGGGCGGCGCGCGGGACGTGCTGGTGTGGACCAACGAGCGCCTGCAGCGGTGGCTGCACCACATCAACCTCAAGGAGTACGCGAACAACCTGTCGGAGAGCGGGGTGCACGGCGCCCTCATCGCGCTCGACGACAGCTTCGACGCCAACAGCATGGCGCTGGCGCTGCAGATCCCCACGCAGAACACGCAGGCGCGGCAGATCCTGGAGGTGGAGTTCGCAAATCTACTGACCACCGGCACCGACCGCGCCGCCCGCGTGCACCACGACCACGCTGCCTCCTGA

Protein

MEFAALTKELNQAREQLLEREEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAAAQSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVALERNTALEEELALTKEELQQYKSSSAQDSEKPKENGTAPTGSPDQNGEQPQTKEQTVNGETESCRKITDLQNTVAKQSAELSSWQRRVAELNNKVSELEERLSKGEKELVKKQEECVKLQRDLRENVAQKEDQEERITTLEKRYLNAQRESTSLHDLNEKLEQELQHKQAQLKLQEEKIAAIEEKLELSTQKLAQMSSLPEMEEQLKARMEALSQAQERHGSAEDRIQRLEASVEEKNAELVRLNQRLRMNEEHNTRLSATVDKLLSESNDRLQVHLKERMHALDEKNALTQELEKTRKYADELMAEKQEILKELAKWRMETEQLKRQMLEQEIAFNIQQTDALTRSLSPGAPQPPQGLFGAKLDGSWEKLQQAHVLANVQQQFDVSSDAENDESDGGVEGGHTDAAALALMLQEQLDAINTEIRLIQEEKQSTEARAEELESRVGSYEHMNVVSRRSDSPPPAASPSRPHLAPHHKFHTLQLCEESAVSLGGVAAGSEGAESPLTARSLRLERAARALHAERDRLRAHYQPPYDSSAMMSTSLARIPMHSSSQESLGAAAGPWGGAPRGVTSASSAVSIASMHQQKKRGIKSSLGRLFSKKEKGGLPCPQGQGSRSLSSASSLGLSSLADDAPPSDLAHVPLQHQEYTRDRDYRHELLGEAMRAGTPFALWNGPTVVAWLELWVGMPAWYVAACRANVKSGAIMSALSDQEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPRGTACAALAFGDMNHEWIGNVWLPSLGLPQYRTTFMECLVDARMLEHLTKRDLRTQLKMVDSFHRTSLHFGVACLKRVGYSVRALEERRRAAEGGGARDVLVWTNERLQRWLHHINLKEYANNLSESGVHGALIALDDSFDANSMALALQIPTQNTQARQILEVEFANLLTTGTDRAARVHHDHAAS

Uniprot

A0A2A4JA66 A0A2A4JAL5 A0A2A4JAF0 A0A2A4JBG0 A0A2A4JB13 A0A2A4J9H5 + More
A0A2A4J9D8 A0A2A4JBD3 H9JP77 A0A139WNT0 D6WC16 A0A0T6B7G1

Pubmed

19121390 18362917 19820115

EMBL

NWSH01002267 PCG68739.1 PCG68738.1 PCG68736.1 PCG68733.1 PCG68734.1 + More
PCG68735.1 PCG68737.1 PCG68740.1 BABH01009626 KQ971309 KYB29537.1 EEZ99137.2 LJIG01009343 KRT83270.1

Proteomes

UP000218220 UP000005204 UP000007266

PRIDE

H9JP77

Pfam

PF00536 SAM_1 + More
PF07647 SAM_2

Interpro

IPR001660   SAM        + More
IPR013761   SAM/pointed_sf
IPR037622   Liprin-alpha_SAM_rpt_3
IPR030442   Syd-2
IPR037620   Liprin-alpha_SAM_rpt_1
IPR037621   Liprin-alpha_SAM_rpt_2
IPR029515   Liprin

SUPFAM

SSF47769 SSF47769

Gene 3D

1.10.150.50

CDD

cd09568  SAM_liprin-alpha1_2_3_4_repeat
cd09562  SAM_liprin-alpha1_2_3_4_repeat
cd09565  SAM_liprin-alpha1_2_3_4_repeat

ProteinModelPortal

A0A2A4JA66 A0A2A4JAL5 A0A2A4JAF0 A0A2A4JBG0 A0A2A4JB13 A0A2A4J9H5 + More
A0A2A4J9D8 A0A2A4JBD3 H9JP77 A0A139WNT0 D6WC16 A0A0T6B7G1

PDB

3TAD E-value=1.66146e-105, Score=982

KEGG

101746727 no KO assigned | (RefSeq) liprin-alpha-1

GO

GO:0045202 GO:0050808 GO:0005515 GO:0005856 GO:0007165 GO:0006412 GO:0004888 GO:0007166 GO:0016020 GO:0004713 GO:0016491 GO:0015930

PANTHER

PTHR12587:SF20 PTHR12587

Length:

1029

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.301630000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1029

Pi

206.964465

Theta

192.065323

Tajima's D

0.371181

CLR

1.277371

CSRT

0.469676516174191

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics