Gene

KWMTBOMO13969

Pre Gene Modal

BGIBMGA011278

Annotation

PREDICTED:_WD_and_tetratricopeptide_repeats_protein_1_[Plutella_xylostella]

Location

Bomo_Chr23(-):14981805-14992496      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.379 Nuclear   Reliability : 1.15

CDS

ATGGGTAGGAGGGAGGAACAGGCATGGGCGAAGGGCACCTTAGGTCTGGCGGTGGCCCGAGAGCGAGGTGACATCGACAGGCAGTTCCAAAACCGATTAATGGTGACGAGGAGTATGATCGACAGACTTGGGTTGGAGAAAGAGCTTCAAGGGCACATGGGATGCGTCAACTGCCTAGAGTGGAATGCTGATGGATCAGTTCTCGCATCGGCATCAGATGATCTGCATGTTATTTTATGGGACCCGTACCGTTACAAGCAGCTACACAATATTGCTACGGGACACACTGGAAATATATTTTCAGTTAAATTTCTGTCGCCGGACACGATCGTGACGTGCGCGGCCGACAGCACGGTGCGGGCTCGCAGCGTGTGCGGGGGCGCCACGCTGCTGGAGTGCTCCTGCCACTGCGGCAGAGTCAAGAGGCTGGCCGCTCCTCCTGATACGCCTCATCTCATCTGGTCTGCGGGAGAAGACGGACTGATATTGCAGCACGACCTCCGCACGGCGCACCGCTGCAACTCTGACTCCTCGAATGTCCTGATTAACCTGCTGAACCACCTGGGCCGGTACGCCGAGGCCAAGTGCGTAGCCGTCAACCCCAGGAGGCCTTACCAGCTGGCCGTCGGTGCTAATGACTTTTACGTTCGCCTGTACGATACCAGGATGGTCAAGCTGGCCAAAATACAAACCAAGGCGTCGTCCACGTCGCACCACCGCATGTTGTGGGAGCGGCAGCACGTGTGCAGCTCGCGCGCCGGCGCCGGCGACCCGGAGAACAACATCCTCCGGGACTCCGTGCACTACTTCGCACCAGGTCACTTGTCCATGGAACCGAACGAGCACACCTTCCCCAAGAAGTCGACGACGTACGTGGCCTTCAGTAACGACGGAAACGAGTTGCTGGTGAACCTGGGCTCCGAGCAGGTGTACCTGTTCGACTTGAACAACGGTCGGAGCCCCGTCTTGCTGGAGAGCTTCATCATCCAACATAACCACGGCCCCAAGGACGGTAAGGTGGCTCCGAAGAATGGAACCAGCGTGCCCATCCTTGCCGACTCCCCTCCCCCCGCGCCCGCCGCGCCCGCGGCCCCCGTCGACTCGCCCACCCACCAGCTGCCAGACCATGTCAAGCAACTCAAGGAAACGGCGAACGGGTACATGGCAAAGGGGAACTACTCGCACGCCGTGGAGTACTACAACCGGGCGCTGGCGGAGTGCCAGAACTGCGCCATCCTGTACTCCAACCGAGCCGCCGCGCTCATGAGGAGGGGCTGGGCCGGGGACACGTACGCCGCCGTCCGGGACTGCTACACGGCCATCCGCCTCGAGCCGGCGCACGTCAAGTCGCACTTCCGGCTCGCGAAGGGGCTCATGGAGCTGCGCAAGGTGCGCGAGGCCCACGAGTCGCTGCTCTACTTCAAGGACAAGTTCCCGCGGCACGCCTCCAGCCACGCCGTGTTCCTGCTGCAGAAGGACATCAACACGCTCCTGGAGGCCAACGACGCGCAGCCCGCCGAAGGGTCCGGAAGTCCAGGCAGCGAAGAGGAGGGCACCGGGACGCAGATCTCGGCCTTGGAGAAGCAGCTCCGCGCCACGGCCCGCGACTACACGTGTCGGTTCCTGGGCCACTGCAACACCACCACGGACATCAAGGAGGCCAACTTCCTGGGGCCCGACGCCGAGTACATCGCCGCGGGCTCCGACGACGGCAGCATCTTCATCTGGAGTCGCCGCACCGGCAACATCGTGCGGTGTCTGCGCGGGGACGAGTCCATCGTCAACTGCATCCAGATGCACCCCAGCATGTTCCTGCTGGCCACCAGCGGCATCGAGGCCGTGGTGCGGCTGTGGAGCCCCCGCCCGGAGGTGAGTCCACCACGACGCTTTGCTGGTTTGTATTTACCAGAACAGTAA

Protein

MGRREEQAWAKGTLGLAVARERGDIDRQFQNRLMVTRSMIDRLGLEKELQGHMGCVNCLEWNADGSVLASASDDLHVILWDPYRYKQLHNIATGHTGNIFSVKFLSPDTIVTCAADSTVRARSVCGGATLLECSCHCGRVKRLAAPPDTPHLIWSAGEDGLILQHDLRTAHRCNSDSSNVLINLLNHLGRYAEAKCVAVNPRRPYQLAVGANDFYVRLYDTRMVKLAKIQTKASSTSHHRMLWERQHVCSSRAGAGDPENNILRDSVHYFAPGHLSMEPNEHTFPKKSTTYVAFSNDGNELLVNLGSEQVYLFDLNNGRSPVLLESFIIQHNHGPKDGKVAPKNGTSVPILADSPPPAPAAPAAPVDSPTHQLPDHVKQLKETANGYMAKGNYSHAVEYYNRALAECQNCAILYSNRAAALMRRGWAGDTYAAVRDCYTAIRLEPAHVKSHFRLAKGLMELRKVREAHESLLYFKDKFPRHASSHAVFLLQKDINTLLEANDAQPAEGSGSPGSEEEGTGTQISALEKQLRATARDYTCRFLGHCNTTTDIKEANFLGPDAEYIAAGSDDGSIFIWSRRTGNIVRCLRGDESIVNCIQMHPSMFLLATSGIEAVVRLWSPRPEVSPPRRFAGLYLPEQ

Uniprot

A0A2A4ITR6   A0A2A4ITM0   A0A2H1VR45   A0A3S2P2P9   F4WAW9   A0A026WZC3   + More
A0A2A3E794   T1IVI1   A0A088A7K5   A0A0M8ZZS8   E2ABI0   A0A0L7R3D8   A0A1B6GAN1   E2C805   A0A147BTV8   A0A131Y1C1   A0A293N5W5   A0A1B6HEV9   A0A232EKI6   A0A1B6LG63   K7J1K8   A0A023FBT7   K1QJ92   A0A0L8H4Z2   A0A1B6D964   A0A0V0GAP1   A0A0K8TQT8   A0A1Q3G3H6   A0A1S4EUP3   A0A0A9XYU9   W5JDP3   C3YXJ5   A0A182NSR3   A0A182F7V2   A0A182TU18   A0A0K8UMF7   A0A182UYR0   A0A182JVP5   A0A182VY85   A7T282   A0A2I4D7T9   A0A2I4D7U4   A0A1S4GHP6   A0A1A8GKL8   A0A099YZC1   A0A182XKD6   A0A3Q2DDN6   A0A1A8KSS1   A0A1A8U1G7   A0A1A8DGA2   A0A3B5MBC3   A0A0S7KKR5   M4A8J8   A0A182HJK8   A0A146P4K6   A0A1A8B3V1   A0A182RDB0   A0A182R0J6   A0A3Q4I3K4   I3JI65   A0A3P9NUJ8   A0A1A8PT78   A0A1A8SKM2   K7F7L6   A0A3B3X054   A0A093I022   A0A3Q3CY86   A0A3B4F7P4   A0A1A7YU66   A0A087XWE5   A0A3B3W2L0   A0A3P8PPG8   A0A3P9CWR0   W5US09   A0A093NRI2   V9KJD6   A0A091T9S7   A0A1S3P6D8   A0A091RN91   A0A093D4H2   A0A091UAP1   R0LDW7   A0A091JGE2   A0A091NIC3   A0A091SM08   A0A087QW61   A0A093FY58   A0A091VJX7   A0A093EYG9   A0A087V231   A0A0A0AAP9   A0A091NXT1   U3J8L4   R7VSB3   A0A091FVJ7   W5M8M4  

Pubmed

21719571    24508170    30249741    20798317    29652888    28648823    + More
20075255    25474469    22992520    26369729    25401762    26823975    20920257    23761445    18563158    17615350    12364791    23542700    25186727    17381049    23127152    24402279    23749191    23371554   

EMBL

NWSH01007141    PCG63069.1    PCG63071.1    ODYU01003774    SOQ42952.1    RSAL01000042    + More
RVE50822.1    GL888054    EGI68659.1    KK107078    QOIP01000011    EZA60494.1    RLU16828.1    KZ288347    PBC27570.1    JH431584    KQ435789    KOX74450.1    GL438255    EFN69207.1    KQ414663    KOC65400.1    GECZ01010289    JAS59480.1    GL453506    EFN75923.1    GEGO01001216    JAR94188.1    GEFM01002737    JAP73059.1    GFWV01023072    MAA47799.1    GECU01034500    JAS73206.1    NNAY01003809    OXU18828.1    GEBQ01017358    JAT22619.1    GBBI01000309    JAC18403.1    JH817051    EKC21711.1    KQ419180    KOF84366.1    GEDC01015163    GEDC01008492    GEDC01007206    JAS22135.1    JAS28806.1    JAS30092.1    GECL01001003    JAP05121.1    GDAI01001090    JAI16513.1    GFDL01000688    JAV34357.1    GBHO01021134    GDHC01001904    JAG22470.1    JAQ16725.1    ADMH02001520    ETN62216.1    GG666563    EEN54804.1    GDHF01024420    GDHF01002855    JAI27894.1    JAI49459.1    DS470212    EDO29936.1    AAAB01008904    HAEB01013382    HAEC01003466    SBQ71543.1    KL887292    KGL74796.1    HAEE01015196    SBR35246.1    HAEJ01001687    SBS42144.1    HADZ01017818    HAEA01003429    SBQ31909.1    GBYX01206115    GBYX01206114    JAO77893.1    APCN01002179    GCES01147570    GCES01146554    JAQ38752.1    HADY01022670    SBP61155.1    AXCN02000227    AERX01027683    HAEF01015081    HAEG01009317    SBR84199.1    HAEI01015979    SBS18448.1    AGCU01160105    AGCU01160106    AGCU01160107    KL206708    KFV85160.1    HADW01008792    HADX01011501    SBP33733.1    AYCK01007860    JT417498    AHH42398.1    KL224693    KFW62747.1    JW865702    AFO98219.1    KK443771    KFQ71036.1    KK705418    KFQ29977.1    KL474107    KFV19979.1    KK425898    KFQ87729.1    KB743278    EOA99719.1    KK500853    KFP10801.1    KL383792    KFP89196.1    KK478239    KFQ59679.1    KL225955    KFM05465.1    KK399883    KFV59331.1    KL411121    KFR03439.1    KK612528    KFV46944.1    KL477013    KFO06673.1    KL871162    KGL90972.1    KK643935    KFP97662.1    ADON01086184    KB375351    AKCR02000266    EMC78694.1    PKK17822.1    KL447465    KFO73673.1    AHAT01009549    AHAT01009550   

Proteomes

UP000218220    UP000283053    UP000007755    UP000053097    UP000279307    UP000242457    + More
UP000005203    UP000053105    UP000000311    UP000053825    UP000008237    UP000215335    UP000002358    UP000005408    UP000053454    UP000000673    UP000001554    UP000075884    UP000069272    UP000075902    UP000075903    UP000075881    UP000075920    UP000001593    UP000192220    UP000053641    UP000076407    UP000265020    UP000261380    UP000002852    UP000075840    UP000265000    UP000075900    UP000075886    UP000261580    UP000005207    UP000242638    UP000007267    UP000261480    UP000053584    UP000264840    UP000261460    UP000028760    UP000261500    UP000265100    UP000265160    UP000221080    UP000054081    UP000087266    UP000053119    UP000053286    UP000053283    UP000053858    UP000016666    UP000053872    UP000053760    UP000018468   

Pfam

PF00400   WD40        + More
PF13174   TPR_6

Interpro

IPR001680   WD40_repeat        + More
IPR013026   TPR-contain_dom       
IPR017986   WD40_repeat_dom       
IPR011990   TPR-like_helical_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019734   TPR_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       

SUPFAM

SSF50978   SSF50978        + More
SSF48452   SSF48452       

Gene 3D

1.25.40.10     2.130.10.10    

ProteinModelPortal

A0A2A4ITR6   A0A2A4ITM0   A0A2H1VR45   A0A3S2P2P9   F4WAW9   A0A026WZC3   + More
A0A2A3E794   T1IVI1   A0A088A7K5   A0A0M8ZZS8   E2ABI0   A0A0L7R3D8   A0A1B6GAN1   E2C805   A0A147BTV8   A0A131Y1C1   A0A293N5W5   A0A1B6HEV9   A0A232EKI6   A0A1B6LG63   K7J1K8   A0A023FBT7   K1QJ92   A0A0L8H4Z2   A0A1B6D964   A0A0V0GAP1   A0A0K8TQT8   A0A1Q3G3H6   A0A1S4EUP3   A0A0A9XYU9   W5JDP3   C3YXJ5   A0A182NSR3   A0A182F7V2   A0A182TU18   A0A0K8UMF7   A0A182UYR0   A0A182JVP5   A0A182VY85   A7T282   A0A2I4D7T9   A0A2I4D7U4   A0A1S4GHP6   A0A1A8GKL8   A0A099YZC1   A0A182XKD6   A0A3Q2DDN6   A0A1A8KSS1   A0A1A8U1G7   A0A1A8DGA2   A0A3B5MBC3   A0A0S7KKR5   M4A8J8   A0A182HJK8   A0A146P4K6   A0A1A8B3V1   A0A182RDB0   A0A182R0J6   A0A3Q4I3K4   I3JI65   A0A3P9NUJ8   A0A1A8PT78   A0A1A8SKM2   K7F7L6   A0A3B3X054   A0A093I022   A0A3Q3CY86   A0A3B4F7P4   A0A1A7YU66   A0A087XWE5   A0A3B3W2L0   A0A3P8PPG8   A0A3P9CWR0   W5US09   A0A093NRI2   V9KJD6   A0A091T9S7   A0A1S3P6D8   A0A091RN91   A0A093D4H2   A0A091UAP1   R0LDW7   A0A091JGE2   A0A091NIC3   A0A091SM08   A0A087QW61   A0A093FY58   A0A091VJX7   A0A093EYG9   A0A087V231   A0A0A0AAP9   A0A091NXT1   U3J8L4   R7VSB3   A0A091FVJ7   W5M8M4  

PDB

4GCO     E-value=5.60031e-08,     Score=139

KEGG

101744425    K11807 WD and tetratricopeptide repeats protein 1 | (RefSeq) WD and tetratricopeptide repeats protei

GO

GO:0055082   GO:0004857   GO:0000122   GO:0008361   GO:0042826   GO:0035264   GO:0045717   GO:0042393   GO:0005829   GO:0006006   GO:0032869   GO:0005634   GO:0005515   GO:0005856   GO:0007165   GO:0006412   GO:0004888   GO:0007166   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

Length:

638

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02326

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00116

outside

1  -  638

 

 

Pi

284.660235

Theta

185.533031

Tajima's D

1.650886

CLR

0.295748

CSRT

0.819909004549773

Interpretation

Uncertain