Gene

KWMTBOMO13960  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011282

Annotation

ribosomal_protein_S13_[Bombyx_mori]

Location

Bomo_Chr23(-):14714678-14717127      View in EpiBrowser

Full name

40S ribosomal protein S13      

Location in the cell

Mitochondrial   Reliability : 3.112

CDS

ATGGGTCGTATGCACGCTCCTGGTAAGGGTATCTCCCAGTCGGCGCTGCCTTACCGCCGCAGTGTCCCTACCTGGTTGAAATTGACTGCCGACGATGTAAAGGAACAAATTTACAAACTTGGAAAGAAGGGTCTCACTCCCTCACAAATTGGTGTAATGCTGAGGGATTCACATGGAGTTGCCCAAGTAAGATTCGTAACTGGCAAAAAGATCCTCCGTATCATGAAGGCAATGGGTCTAGCTCCTGACTTACCGGAGGATCTTTACTACCTGATCAAGAAAGCTGTTGCAATGAGAAAGCACTTGGAACGCAACAGGAAAGACAAAGACAGCAAATTCAGGCTTATTTTAGTAGAGTCCAGGATTCACAGACTGGCCCGTTATTACAAAACTAAGAGTGTGCTTCCTCCTAACTGGAAATATGAGTCTAGCACTGCTTCAGCTCTTGTGGCTTAA

Protein

MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA

Similarity

Belongs to the universal ribosomal protein uS15 family.

Keywords

Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S13

Uniprot

Q5UAN0   I4DMN5   A0A194RJR1   A0A3S2NHB4   A0A2H1WAZ0   E7DYZ4   + More
I4DIK9   A0A291FJ98   S4P4H1   A0A212FD11   A0A2A4K347   Q962R6   G0ZEB1   L7X1K2   D1LYM7   C3PPG3   A0A1E1VZP3   A0A194QIB7   Q8I7U0   Q6EV26   Q8MUR2   A0A3G1T1N5   Q6F459   A0A0K8S7K5   A0A2J7PIK2   R4UW22   A0A067RHM2   A0A1B6F7E0   A0A1B6I3Y6   A0A1B6EAV8   R4WR51   E0VPE8   A0A161M8N6   R4G8J8   Q4GXS1   A0A341A9N2   A0A2Y9ELS7   A0A2I0USZ0   A0A226MIL7   A0A3L8SW59   W5M556   A0A218UU05   A0A1V4JQ20   G1K874   A0A0B8RXA1   A0A0Q3X842   A0A0A0AWG6   A0A091UQ42   A0A1W7RDU7   J3S9G8   T1DL92   B5FZH6   U3F6M8   A0A3L7HUB5   I3MCQ1   A0A1U7QYC6   A0A250YAD6   A0A091CMK1   G5B0I4   Q5BLJ7   A0A2K6E0B3   A0A2K6KBZ6   A0A384DJ88   G1SP51   L5L6F5   G1PEE7   A0A2K5V043   G3QWW5   A0A2I3FWD3   L8IKI7   F6Q5P0   A0A2K5Z327   G3UDN8   A0A2Y9D8Z5   A0A2U3V069   A0A3Q7QWK1   A0A340WNI9   A0A2R9BWG0   A0A2K5D9Q6   A0A2I3MNN3   A0A2K6QGL4   A0A2Y9GP95   A0A2U3YG39   A0A2I2U4A9   A0A2K5P422   A0A2Y9JRU0   A0A1S2Z9E4   A0A3P4PKM1   A0A2Y9LPZ3   A0A2U3X0L5   A0A2K5Q3G7   A0A2K5KAA4   F7IH12   A0A2K6UHZ3   A0A2K6GE15   A0A3Q7V1S8   H2NE06   M3YPG0   A0A2I3S6G7   A0A1U7TYT2  

Pubmed

19121390    22651552    26354079    23622113    22118469    14668217    + More
23674305    24845553    23691247    20566863    30282656    25476704    26358130    23025625    23758969    25727380    17018643    23915248    29704459    28087693    21993625    10349636    11042159    11076861    11217851    12466851    12040188    15489334    16141073    21183079    23806337    24813606    21993624    23873042    25601755    26245381    27863242    27373335    30517857    29856316    30355441    30293783    23258410    22398555    22751099    30723633    22722832    25362486    17975172    16136131   

EMBL

BABH01009600    AY769328    AAV34870.1    AK402553    BAM19175.1    KQ460297    + More
KPJ16186.1    RSAL01000099    RVE47566.1    ODYU01007143    SOQ49664.1    HQ424697    ADT80641.1    AK401127    BAM17749.1    KY039976    ATG34155.1    GAIX01009032    JAA83528.1    AGBW02009117    OWR51631.1    NWSH01000204    PCG78436.1    AF400210    JF264989    AEL28820.1    KC469894    AGC92741.1    GU084301    ACY95334.1    CU681835    CU672275    CAY54153.1    CAY54171.1    GDQN01010900    JAT80154.1    KQ458761    KPJ05139.1    AY174891    AJ783761    CAH04124.1    AF514336    MG992451    AXY94889.1    AB180431    BAD26675.1    GBRD01016559    JAG49267.1    NEVH01025127    PNF16144.1    KC571922    AGM32421.1    KK852463    KDR23361.1    GECZ01023684    JAS46085.1    GECU01026055    JAS81651.1    GEDC01002230    JAS35068.1    AK417137    BAN20352.1    DS235363    EEB15254.1    GEMB01000097    JAS03014.1    ACPB03001343    GAHY01000847    JAA76663.1    AM048952    CAJ17188.1    KZ505641    PKU49164.1    MCFN01000796    OXB55122.1    QUSF01000004    RLW10018.1    AHAT01008197    MUZQ01000133    OWK57106.1    LSYS01006880    OPJ73847.1    GBSH01002368    JAG66658.1    LMAW01000336    KQL59429.1    KL873477    KGL98889.1    KK460845    KFQ79045.1    GDAY02002130    JAV49302.1    JU175764    GBEX01002965    AFJ51288.1    JAI11595.1    GAAZ01002177    GBKC01000028    JAA95766.1    JAG46042.1    DQ214530    DQ214531    ACH44437.1    GAEP01001399    GBEW01000882    JAB53422.1    JAI09483.1    RAZU01000142    RLQ69517.1    AGTP01045648    GFFW01004252    JAV40536.1    KN125342    KFO18678.1    JH167821    GEBF01005738    EHB02795.1    JAN97894.1    BC090397    BC106137    BC125602    BC125604    AK151043    AK151671    AK166691    CH466543    CH466525    CH466531    AAH90397.1    AAI06138.1    AAI25603.1    BAE30060.1    EDL06792.1    EDL11033.1    EDL17101.1    KB030282    ELK18846.1    AAPE02027392    AQIA01020923    CABD030077674    ADFV01112586    ADFV01112587    ADFV01112588    JH881225    ELR55652.1    AEMK02000009    DQIR01223640    DQIR01239045    HDB79117.1    AJFE02062246    AHZZ02006918    AANG04002890    CYRY02032377    VCX10121.1    ABGA01013847    NDHI03003449    PNJ47451.1    AEYP01030435    AEYP01038711    AACZ04016570    NBAG03000219    PNI79145.1   

Proteomes

UP000005204    UP000053240    UP000283053    UP000007151    UP000218220    UP000053268    + More
UP000235965    UP000027135    UP000009046    UP000015103    UP000252040    UP000248484    UP000198323    UP000276834    UP000018468    UP000197619    UP000190648    UP000001646    UP000051836    UP000053858    UP000273346    UP000005215    UP000189706    UP000028990    UP000006813    UP000233120    UP000233180    UP000261680    UP000291021    UP000001811    UP000010552    UP000001074    UP000233100    UP000001519    UP000001073    UP000008227    UP000233140    UP000007646    UP000248480    UP000245320    UP000286641    UP000265300    UP000240080    UP000233020    UP000028761    UP000233200    UP000248481    UP000245341    UP000011712    UP000233060    UP000248482    UP000079721    UP000248483    UP000245340    UP000233040    UP000233080    UP000008225    UP000233220    UP000233160    UP000286642    UP000001595    UP000000715    UP000002277    UP000189704   

PRIDE

Q5UAN0    Q962R6    Q8I7U0    Q8MUR2    F6Q5P0   

Pfam

PF08069   Ribosomal_S13_N        + More
PF00312   Ribosomal_S15

Interpro

IPR000589   Ribosomal_S15        + More
IPR023029   Ribosomal_S15P       
IPR012606   Ribosomal_S13/S15_N       
IPR009068   S15_NS1_RNA-bd       

SUPFAM

SSF47060   SSF47060       

CDD

cd00353  Ribosomal_S15p_S13e

ProteinModelPortal

Q5UAN0   I4DMN5   A0A194RJR1   A0A3S2NHB4   A0A2H1WAZ0   E7DYZ4   + More
I4DIK9   A0A291FJ98   S4P4H1   A0A212FD11   A0A2A4K347   Q962R6   G0ZEB1   L7X1K2   D1LYM7   C3PPG3   A0A1E1VZP3   A0A194QIB7   Q8I7U0   Q6EV26   Q8MUR2   A0A3G1T1N5   Q6F459   A0A0K8S7K5   A0A2J7PIK2   R4UW22   A0A067RHM2   A0A1B6F7E0   A0A1B6I3Y6   A0A1B6EAV8   R4WR51   E0VPE8   A0A161M8N6   R4G8J8   Q4GXS1   A0A341A9N2   A0A2Y9ELS7   A0A2I0USZ0   A0A226MIL7   A0A3L8SW59   W5M556   A0A218UU05   A0A1V4JQ20   G1K874   A0A0B8RXA1   A0A0Q3X842   A0A0A0AWG6   A0A091UQ42   A0A1W7RDU7   J3S9G8   T1DL92   B5FZH6   U3F6M8   A0A3L7HUB5   I3MCQ1   A0A1U7QYC6   A0A250YAD6   A0A091CMK1   G5B0I4   Q5BLJ7   A0A2K6E0B3   A0A2K6KBZ6   A0A384DJ88   G1SP51   L5L6F5   G1PEE7   A0A2K5V043   G3QWW5   A0A2I3FWD3   L8IKI7   F6Q5P0   A0A2K5Z327   G3UDN8   A0A2Y9D8Z5   A0A2U3V069   A0A3Q7QWK1   A0A340WNI9   A0A2R9BWG0   A0A2K5D9Q6   A0A2I3MNN3   A0A2K6QGL4   A0A2Y9GP95   A0A2U3YG39   A0A2I2U4A9   A0A2K5P422   A0A2Y9JRU0   A0A1S2Z9E4   A0A3P4PKM1   A0A2Y9LPZ3   A0A2U3X0L5   A0A2K5Q3G7   A0A2K5KAA4   F7IH12   A0A2K6UHZ3   A0A2K6GE15   A0A3Q7V1S8   H2NE06   M3YPG0   A0A2I3S6G7   A0A1U7TYT2  

PDB

6IP8     E-value=4.30223e-70,     Score=666

KEGG

778455    K02953 small subunit ribosomal protein S13e | (RefSeq) RpS13; ribosomal protein S13

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0005840   GO:0003735   GO:0005730   GO:0070181   GO:0022627   GO:0048027   GO:0033119   GO:0014069   GO:0005622   GO:0004888   GO:0007166   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR11885  

Length:

151

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00269

Exp number, first 60 AAs:

0.00067

Total prob of N-in:

0.11661

outside

1  -  151

 

 

Pi

123.334059

Theta

15.417533

Tajima's D

-0.973911

CLR

328.974284

CSRT

0.145442727863607

Interpretation

Uncertain