Silkworm Genome Informatics Database

Gene

KWMTBOMO13956

Pre Gene Modal

BGIBMGA011284

Annotation

PREDICTED:_vang-like_protein_1_[Papilio_xuthus]

Location

Bomo_Chr23(-):14678349-14683467 View in EpiBrowser

Full name

Vang-like protein

Location in the cell

PlasmaMembrane Reliability : 3.449

CDS

ATGGAGACAGAATCGGTGAGGTCCGAGTTGAGCAGCCGATCCCGGCGCAGCTCCAGACATAGGCACAACACGCACCGAAGCACCAGGAGTACAAAATCACAACGGAAAGAAAGCGGTGACAACATAATGGCACCATTTCAAACAAGTGTCAACATAAACCCTGAAACAGGTAGAGATGGCCAGGAGGTAATAGAAGTTCAGATTCTCCCACAAGATGAGAACTGGGGAGAAAATACAACTGCTGTAACTGGCAACACATCTGAAGGTTCTCAATCTATGGAAGATGTCAGTAATTGGGCTATGGAGTCAGATGGTGGATTAGGTTTTGTCTGCTCAAGATACTTTGGGACAACTTTGGCTTTGGGATTGACATTTGTGGCCTTCATCAGTCCACTAACAATGGTAGTTTTACCAAAAATAGGTTTCTTTCCGGGACTGAGTGATAACATCTTGCAACCCAGTCAACAAATGGAGTTGCTAGCCTGCACAGCGGAATGCAAAGGTGTTCTTTTGTCACTGGCATTTAAACTTGTATTATTAGCTATAGGAGTATGGGCAGCATTCCTTAGGCCACGGAATGCCATTTTACCAAGAATATTTGTTTTTCGAGCTGTAACTCTAGTGATGATAGCAGTATGCACATTTTCTTACTGGCTCTTCTACATTGTTCAGATAACGGAGGCAACTAAAGCAATAGCATTAGGTGAAGATGCAACAGATTACAAAGCTCTTGTTACATATGTATCGAGTTTTGCAGATACATTGCTTTTCATACATTATGTAGCAGTAATCTTGATAGAAATAAGACATTTAGAGCCGAATTATTATATTAAAATCGTCAGAAGTCCTGATGGAGAGAGTAGATCATATGCAATAGGCCAATTAAGCATCCAAAGAGCTGCCGTATGGGTATTACAGAGATATTATACCGAGTTTCCGATATATAACCCATATCTGGAGAAGATACCAATATCGAAGAGTCAGAGAAAGGCACAATCCAGTATTAAATTTTATGATGTCGATGGATCTAACACAAATGCGGCAGGACAAACAAGATCGACAGCCGGTTCTTGTGCCGGAAGCGGGAGTGGTCGGCGTCGGGAGTCGGTCTCCGCGCACAACGAGCGCTACCACGAGGAGGCAGAACGAGAGCGACGAGTCAGGAAGCGACGTGCCAGATTGTTGGCGGCTGCGGATGATGCTTTTGCACACGTCCGAAGAGTCAGATTGTCTGCTGCCAATGGGGGAGCGCTGGGTCCCCGCGAGGCTGCACAGGCCGTATTCCCTTCCCTAGCTCGGGCACTGCAAAAGTATCTCCGGGCCACCAGGCAACAGCCCAGACACACTGCTGACTCAGTCTTAGCCCATCTAGCTCGCTGCTTATCCCAGGATGCGTCACCTCGTGCTTTCCTCGAGCCATTCCTAGTGGAAGGCCCGGTTCTGGCTGCCGACCACGAGACTCGTCCTTTGCAGCGCTGGTCGCTCATCTCCGACGAGCTGTTAGCGCGACCTATTGCCCACAACATCGACTTCCAACTCCGTCAAGGTGACGTTTCATTAATATGTTCTATAAAACAGCTACCTAAATTCAGCTTGTCTGAGGAAGTCGTTGACCCGAAGAGCAACAGGTTCGTGCTCAGGCTCAATTCGGAGACGTCAGTTTGA

Protein

METESVRSELSSRSRRSSRHRHNTHRSTRSTKSQRKESGDNIMAPFQTSVNINPETGRDGQEVIEVQILPQDENWGENTTAVTGNTSEGSQSMEDVSNWAMESDGGLGFVCSRYFGTTLALGLTFVAFISPLTMVVLPKIGFFPGLSDNILQPSQQMELLACTAECKGVLLSLAFKLVLLAIGVWAAFLRPRNAILPRIFVFRAVTLVMIAVCTFSYWLFYIVQITEATKAIALGEDATDYKALVTYVSSFADTLLFIHYVAVILIEIRHLEPNYYIKIVRSPDGESRSYAIGQLSIQRAAVWVLQRYYTEFPIYNPYLEKIPISKSQRKAQSSIKFYDVDGSNTNAAGQTRSTAGSCAGSGSGRRRESVSAHNERYHEEAERERRVRKRRARLLAAADDAFAHVRRVRLSAANGGALGPREAAQAVFPSLARALQKYLRATRQQPRHTADSVLAHLARCLSQDASPRAFLEPFLVEGPVLAADHETRPLQRWSLISDELLARPIAHNIDFQLRQGDVSLICSIKQLPKFSLSEEVVDPKSNRFVLRLNSETSV

Similarity

Belongs to the Vang family.

Uniprot

H9JP30 A0A194QNT8 A0A194RJS1 A0A023F511 A0A1S3D2T7 K7IPC3 + More

Pubmed

19121390 26354079 25474469 20075255

EMBL

BABH01009596 BABH01009597 KQ458761 KPJ05146.1 KQ460297 KPJ16196.1 + More
GBBI01002593 JAC16119.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000079169 UP000002358

PRIDE

H9JP30

Pfam

PF06638 Strabismus

Interpro

IPR009539 VANGL

ProteinModelPortal

H9JP30 A0A194QNT8 A0A194RJS1 A0A023F511 A0A1S3D2T7 K7IPC3 + More

KEGG

101743371 K04510 vang-like | (RefSeq) vang-like protein 1

PATHWAY

04310 Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0005886 GO:0016021 GO:0007275 GO:0007186 GO:0004888 GO:0007166 GO:0016020 GO:0004713 GO:0016491 GO:0015930

PANTHER

PTHR20886

Subcellular location

Cell membrane

Length:

554

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

87.2214799999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36572

outside

1 - 124

TMhelix

125 - 147

inside

148 - 167

TMhelix

168 - 190

outside

191 - 199

TMhelix

200 - 222

inside

223 - 242

TMhelix

243 - 265

outside

266 - 554

Pi

206.122507

Theta

213.90625

Tajima's D

0.832104

CLR

0.147167

CSRT

0.608419579021049

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics