Gene

KWMTBOMO13947  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011317

Annotation

PREDICTED:_sorting_nexin-12_[Papilio_xuthus]

Location

Bomo_Chr23(+):14361368-14366987      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.555 Nuclear   Reliability : 1.74

CDS

ATGATGGCTGAGGATGCAACAGCCGAAGCTACTAGACGTCTCAACGTTAAGAAACAAACGTTGGATGACGCGTACGCGGCGCCGGCGAATTTCTTAGAAATCGACGTTCTTAATCCAGTGACCACTATGGGTGTTGGTAAAAAACGCTACACGGATTACGAAGTTCGTATGAGGACAAACCTACCCGTTTTCAAAGTGAAAGATTCGAGCGTCAGACGGCGGTATAGCGACTTCGAGTGGCTCAGGAATGAATTGGAGAGGGACAGCAAGATAGTCGTACCTCCCTTGCCCGGCAAAGCTCTGAAGAGACAGTTGCCGTTCAGAGGCGATGATGGTATATTTGAGGAGGAATTTATAGAGGACCGCAGAAAAGGTCTGGAAGTGTTCATCAACAAGATAGCCGGGCACCCGCTGGCGCAGAACGAGCGCTGCCTCCACATGTTCCTGCAGGAGCCCACCATCGACAGGAGCTACGTGCCCGGCAAGATCAGGAACACATAA

Protein

MMAEDATAEATRRLNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYSDFEWLRNELERDSKIVVPPLPGKALKRQLPFRGDDGIFEEEFIEDRRKGLEVFINKIAGHPLAQNERCLHMFLQEPTIDRSYVPGKIRNT

Uniprot

H9JP63   A0A2H1WRC4   A0A2A4K8H3   A0A194QHX0   A0A1E1W0Z6   L7X1S1   + More
D6W8L6   C3PPF4   A0A1Y1LWG3   A0A212FD42   A0A182H1V3   B4NHZ7   U4U778   J3JTF2   A0A1W4WMN4   A0A1L8DVW6   B4JGS1   T1E893   A0A2M3Z838   A0A2M4ANV4   A0A2M4C1J1   W5JSZ8   A0A084WSR3   B4QS88   A0A3B0K3P0   Q29BS2   B4GN06   B4PPC3   B3M1X6   B4HGV6   B3P491   Q9VG51   A0A0T6B412   A0A182F8L7   A0A1W4UN59   A0A0K8VXL3   A0A0A1WZP1   A0A034VX97   B4MC73   B4K7G6   B0W379   A0A0A9X9Y5   A0A182QFF7   A0A0M4F4A9   A0A0K8TQE9   A0A1Q3FDW6   A0A182M7V5   A0A182VHS7   A0A182JZF3   A0A182TW52   A0A182VSA8   A0A182XK53   A0A182KX08   Q7QDI2   A0A182R830   A0A182HJT7   A0A182PMX9   U5EI23   T1PC58   A0A151IRM0   A0A195BWJ8   A0A195FQJ7   A0A158NUW6   E1ZWA0   A0A151WT21   A0A2H8TFU9   C4WTD1   A0A0L7R8J5   A0A0L0CGE8   A0A195CRM6   A0A224XV01   A0A069DPS7   R4G544   Q17CA9   E2B7F6   T1D517   A0A1L8EDS5   A0A026W2F6   A0A2A3E517   V9IKW3   A0A0N0BC78   A0A088A6E1   K7IX60   A0A1B0G8S6   A0A1A9XJ17   A0A1A9V744   A0A1B0BXY8   A0A1A9W601   A0A1S3D9U8   A0A336MJL0   A0A154PJ85   A0A067RFT6   A0A1I8PUQ9   A0A2J7PE96   A0A0P4VY86   A0A023FAP0   A0A1B6GNE2   A0A1B6JV27   A0A182ITT6   A0A1B6DHG3  

Pubmed

19121390    26354079    23674305    18362917    19820115    28004739    + More
22118469    26483478    17994087    23537049    22516182    20920257    23761445    24438588    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25830018    25348373    25401762    26823975    26369729    20966253    12364791    14747013    17210077    25315136    21347285    20798317    26108605    26334808    17510324    24330624    24508170    30249741    20075255    24845553    27129103    25474469   

EMBL

BABH01009575    ODYU01010475    SOQ55611.1    NWSH01000057    PCG80103.1    KQ458761    + More
KPJ05153.1    GDQN01010408    JAT80646.1    KC469894    AGC92728.1    KQ971312    EEZ98290.1    CU467808    CAY54164.1    GEZM01045194    JAV77869.1    AGBW02009117    OWR51618.1    JXUM01023259    JXUM01023260    JXUM01023261    JXUM01023262    KQ560656    KXJ81412.1    CH964272    EDW83647.1    KB631815    ERL86456.1    BT126508    AEE61472.1    GFDF01003525    JAV10559.1    CH916369    EDV92675.1    GAMD01002377    JAA99213.1    GGFM01003933    MBW24684.1    GGFK01009132    MBW42453.1    GGFJ01010028    MBW59169.1    ADMH02000563    GGFL01004312    ETN65879.1    MBW68490.1    ATLV01026697    KE525417    KFB53257.1    CM000364    EDX13184.1    OUUW01000007    SPP82560.1    CM000070    EAL26925.1    CH479186    EDW39132.1    CM000160    EDW97129.1    CH902617    EDV42236.1    CH480815    EDW42427.1    CH954181    EDV49336.1    AE014297    AY071431    AAF54838.1    AAL49053.1    AAN13550.2    LJIG01009898    KRT82160.1    GDHF01026186    GDHF01020641    GDHF01016552    GDHF01016354    GDHF01008715    JAI26128.1    JAI31673.1    JAI35762.1    JAI35960.1    JAI43599.1    GBXI01011331    GBXI01010449    JAD02961.1    JAD03843.1    GAKP01011885    GAKP01011884    GAKP01011883    JAC47069.1    CH940656    EDW58694.1    CH933806    EDW15310.1    DS231831    EDS31222.1    GBHO01026795    GBRD01013524    GBRD01013523    GDHC01014314    JAG16809.1    JAG52302.1    JAQ04315.1    AXCN02000110    CP012526    ALC46170.1    GDAI01001498    JAI16105.1    GFDL01009285    JAV25760.1    AXCM01001279    AAAB01008851    EAA07353.4    APCN01002209    GANO01002799    JAB57072.1    KA645705    AFP60334.1    KQ981122    KYN09346.1    KQ976401    KYM92655.1    KQ981335    KYN42572.1    ADTU01026790    ADTU01026791    GL434781    EFN74540.1    KQ982769    KYQ50937.1    GFXV01001188    MBW12993.1    ABLF02034746    AK340566    BAH71151.1    KQ414632    KOC67207.1    JRES01000413    KNC31468.1    KQ977444    KYN02764.1    GFTR01002768    JAW13658.1    GBGD01003257    JAC85632.1    ACPB03009364    GAHY01000810    JAA76700.1    CH477310    EAT43966.1    GL446181    EFN88331.1    GALA01000733    JAA94119.1    GFDG01001967    JAV16832.1    KK107467    QOIP01000013    EZA50262.1    RLU15544.1    KZ288405    PBC26171.1    JR052353    AEY61680.1    KQ435922    KOX68538.1    AAZX01000605    AAZX01008772    CCAG010009134    JXJN01022426    UFQT01001447    UFQT01002076    SSX30604.1    SSX32589.1    KQ434936    KZC11905.1    KK852498    KDR22612.1    NEVH01026106    PNF14663.1    GDKW01001010    JAI55585.1    GBBI01000608    JAC18104.1    GECZ01005844    JAS63925.1    GECU01004943    JAT02764.1    GEDC01012159    JAS25139.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007266    UP000007151    UP000069940    + More
UP000249989    UP000007798    UP000030742    UP000192223    UP000001070    UP000000673    UP000030765    UP000000304    UP000268350    UP000001819    UP000008744    UP000002282    UP000007801    UP000001292    UP000008711    UP000000803    UP000069272    UP000192221    UP000008792    UP000009192    UP000002320    UP000075886    UP000092553    UP000075883    UP000075903    UP000075881    UP000075902    UP000075920    UP000076407    UP000075882    UP000007062    UP000075900    UP000075840    UP000075885    UP000095301    UP000078492    UP000078540    UP000078541    UP000005205    UP000000311    UP000075809    UP000007819    UP000053825    UP000037069    UP000078542    UP000015103    UP000008820    UP000008237    UP000053097    UP000279307    UP000242457    UP000053105    UP000005203    UP000002358    UP000092444    UP000092443    UP000078200    UP000092460    UP000091820    UP000079169    UP000076502    UP000027135    UP000095300    UP000235965    UP000075880   

PRIDE

H9JP63    Q9VG51   

Pfam

PF00787   PX        + More
PF04500   FLYWCH

Interpro

IPR001683   Phox        + More
IPR036871   PX_dom_sf       
IPR007588   Znf_FLYWCH       

SUPFAM

SSF64268   SSF64268       

Gene 3D

3.30.1520.10    

ProteinModelPortal

H9JP63   A0A2H1WRC4   A0A2A4K8H3   A0A194QHX0   A0A1E1W0Z6   L7X1S1   + More
D6W8L6   C3PPF4   A0A1Y1LWG3   A0A212FD42   A0A182H1V3   B4NHZ7   U4U778   J3JTF2   A0A1W4WMN4   A0A1L8DVW6   B4JGS1   T1E893   A0A2M3Z838   A0A2M4ANV4   A0A2M4C1J1   W5JSZ8   A0A084WSR3   B4QS88   A0A3B0K3P0   Q29BS2   B4GN06   B4PPC3   B3M1X6   B4HGV6   B3P491   Q9VG51   A0A0T6B412   A0A182F8L7   A0A1W4UN59   A0A0K8VXL3   A0A0A1WZP1   A0A034VX97   B4MC73   B4K7G6   B0W379   A0A0A9X9Y5   A0A182QFF7   A0A0M4F4A9   A0A0K8TQE9   A0A1Q3FDW6   A0A182M7V5   A0A182VHS7   A0A182JZF3   A0A182TW52   A0A182VSA8   A0A182XK53   A0A182KX08   Q7QDI2   A0A182R830   A0A182HJT7   A0A182PMX9   U5EI23   T1PC58   A0A151IRM0   A0A195BWJ8   A0A195FQJ7   A0A158NUW6   E1ZWA0   A0A151WT21   A0A2H8TFU9   C4WTD1   A0A0L7R8J5   A0A0L0CGE8   A0A195CRM6   A0A224XV01   A0A069DPS7   R4G544   Q17CA9   E2B7F6   T1D517   A0A1L8EDS5   A0A026W2F6   A0A2A3E517   V9IKW3   A0A0N0BC78   A0A088A6E1   K7IX60   A0A1B0G8S6   A0A1A9XJ17   A0A1A9V744   A0A1B0BXY8   A0A1A9W601   A0A1S3D9U8   A0A336MJL0   A0A154PJ85   A0A067RFT6   A0A1I8PUQ9   A0A2J7PE96   A0A0P4VY86   A0A023FAP0   A0A1B6GNE2   A0A1B6JV27   A0A182ITT6   A0A1B6DHG3  

PDB

5F0P     E-value=5.40458e-54,     Score=528

KEGG

101742410    K17918 sorting nexin-3/12 | (RefSeq) sorting nexin-12

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0035091   GO:0030904   GO:0061357   GO:0050821   GO:0035220   GO:0032456   GO:0005769   GO:0032266   GO:0004812   GO:0005524   GO:0006418   GO:0004814   GO:0006420   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

Length:

166

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04658

Exp number, first 60 AAs:

0.04658

Total prob of N-in:

0.20795

outside

1  -  166

 

 

Pi

205.581173

Theta

170.625586

Tajima's D

0.576735

CLR

29.541614

CSRT

0.533473326333683

Interpretation

Uncertain