Silkworm Genome Informatics Database

Gene

KWMTBOMO13937

Annotation

PREDICTED:_uncharacterized_protein_LOC105842998_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr23(+):14155908-14157269 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.715 Nuclear Reliability : 2.217

CDS

ATGGACCTTGAGTCTACCGCCTCCCACCCTAAAATTACACCCAATCCCATTCCATCTCCAGTACCTTCCACCTCCTATGCTGCAATAGCAGCAACACAAAAGCCATCGACCACGACTCATAGACCAGAGTTAACCAAGTCCCCTGCTCCAGGAGGGATCCGTGCTAACGAGGCACCCCGCCGCCACCCACCTATTATGGTGGAAGCGCTCCCGAACTGGTCTCGCCACATGGCGGCCATAAGGGAGCGCTTGGGGCGGGTCCCGTCTGTGCGACCCTATGGAACAGGGTTTAGATTTCTGCCCGCGTCGGCAGAAGAATACAGGGTGGTTCAAGCCTACCTCGCGGGGGCCTCCTCCGCGGACAGCGCCGTAAAGTGGTACTGTTATGCGTTAGAGGAGGACATCCCCGCGAGGGTGGCGATTCGAGGCCTGCCCGCTGACACCGACGCGGCAGAAATCATTAACGCCCTAAAGGAGCTGGGGTTCCCGGCCCGCTACGCCCGGTGCATAAGGGCAAAGAGAGGGAGGCCGGGTTGCGTATTTTTCGTAACCCTTGACCACCTCTCCAAGGAAGGCCTCGCCCGCTTGTACGCAGTTGAAGAACTGCTGTACCTGCCGGGGGTGTCAGTTGAGGGATGGCGTCCGAACCGAGGACCGGCGCAGTGCCATCGCTGCCAGGCCTTCGGACACGCCTCCACCAACTGCCACCGAGCGGTCCGCTGTGTGCGATGTGCGGGCGAGCACATCGTGGCGGACTGCCCGAGGCCAAGGGAGGGACCCCTCACCTGCGCCAACTGCGGGAAGGGCCACGCCGCTATTGATAAGCGGTGTGTGGTCTACCGCAGGAGGGCGCGGATGATGGGGGTCGCTATTCCTCCCCCCGTACCGCAAGCAGCGACGCGTGCCAGCCAAGCCCCTACCCCCGCTCCACGTCTCGGTCCACGCCCATCTCTGAAGGGTAAGGGCAAGGGGAAGACTTCTCAACCCCCCACTCTCCCTCCGGTTATAGAGCAACCTGCCACTGTGGAGGCCAACCCAACAGCGGCCACCCTGATGGCAGAAGCAAACCCGCAGCGAAAAGCTATAAAGCCGCGACCTGCCCCTCGTTCCAGTAATAAGGCAGCATCCAACTTACAAGCTGCCTTAACTACAACTACAACAAAAACTCAAAAAAAAAATAAGAAAAAAAAATAA

Protein

MDLESTASHPKITPNPIPSPVPSTSYAAIAATQKPSTTTHRPELTKSPAPGGIRANEAPRRHPPIMVEALPNWSRHMAAIRERLGRVPSVRPYGTGFRFLPASAEEYRVVQAYLAGASSADSAVKWYCYALEEDIPARVAIRGLPADTDAAEIINALKELGFPARYARCIRAKRGRPGCVFFVTLDHLSKEGLARLYAVEELLYLPGVSVEGWRPNRGPAQCHRCQAFGHASTNCHRAVRCVRCAGEHIVADCPRPREGPLTCANCGKGHAAIDKRCVVYRRRARMMGVAIPPPVPQAATRASQAPTPAPRLGPRPSLKGKGKGKTSQPPTLPPVIEQPATVEANPTAATLMAEANPQRKAIKPRPAPRSSNKAASNLQAALTTTTTKTQKKNKKKK

Uniprot

A0A0L7KYQ7 D4N2G8 A0A2A4JD01 A0A087US09 Q6UJ36 Q6UJ37 + More
A0A2S2PSN0 J9LFC9 B1NYJ4 A0A336LMN6 J9LLT1

Pubmed

26227816 20167051 14614149 18377637

EMBL

JTDY01004442 KOB68159.1 GQ202541 ADD73840.1 NWSH01001929 PCG69636.1 + More
KK121298 KFM80148.1 AY369260 AAQ75091.1 AAQ75090.1 GGMR01019873 MBY32492.1 ABLF02023911 EU168819 ABY50130.1 UFQT01000023 SSX18031.1 ABLF02038391 ABLF02038396

Proteomes

UP000037510 UP000203822 UP000218220 UP000054359 UP000007819

Pfam

PF07530   PRE_C2HC        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR006579   Pre_C2HC_dom        + More
IPR035979   RBD_domain_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF54928 SSF54928 + More
SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

A0A0L7KYQ7 D4N2G8 A0A2A4JD01 A0A087US09 Q6UJ36 Q6UJ37 + More
A0A2S2PSN0 J9LFC9 B1NYJ4 A0A336LMN6 J9LLT1

KEGG

105842998 no KO assigned | (RefSeq) uncharacterized LOC105842998

GO

GO:0003676 GO:0008270 GO:0006468 GO:0050660 GO:0016020 GO:0016627 GO:0016787 GO:0004713 GO:0016491 GO:0015930

Length:

397

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00248

Exp number, first 60 AAs:

0.00098

Total prob of N-in:

0.02187

outside

1 - 397

Pi

297.958048

Theta

176.720148

Tajima's D

2.326357

CLR

0

CSRT

0.929853507324634

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree