Gene

KWMTBOMO13932

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):13919188-13920842      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.914

CDS

ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCATACTCTCAAATCGGATACGGTAGTAACTATGCCCCACCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCATCGGATGCGTTACCACCCGTCACCCCGATAGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCTGACGGTATATCTAACCGCGTTATTAAACTTATACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCAGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAG

Protein

MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLAHTLKSDTVVTMPHLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLIPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNEGKLHTDFLPD

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
D7EM17   A0A139W8G9   A0A2S2Q352   V5GNJ2   A0A2S2QEE0   A0A139WA11   A0A2S2PEZ9   K7IN67   A0A2S2NPT6   X1WVL6   X1WKS2   A0A2H8U0H5   J9KLB1   A0A0C9RJA4   A0A087UCW3   A0A1B6J5Z9   J9KKL3   A0A2S2RB48   A0A1Y1KFT3   A0A232ENU1   A0A023EYS8   X1WXE6   A0A1Y1KFR3   A0A224XF24   A0A2H8TKI9   A0A023F6S4   Q95SX7   A0A087THU2   J9LC21   A0A2S2PWA8   A0A2S2PPK8   A0A2S2N629   A0A224XB44   A0A2S2N814   A0A3N5Z7I3   A0A087U3K8   A0A2S2P3X8   A0A2S2PA10   A0A2S2PR14   A0A224X6S1   A0A087T3W0   A0A2S2QA24   A0A023F069   X1WR00   A0A2J7R7D0   A0A2S2P6S3   J9KC83   A0A2S2Q2R8   A0A2S2PBB4   Q07995   A0A224XIB0   A0A023F700   A0A2S2N6C8   J9K7I4   A0A2S2N6Q7   X1WQ25   A0A224X7Z3   A0A0H3UA66   A0A1B6C2V8   A0A2S2R4B7   X1WS66   X1WZH0  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    28648823    25474469    7753626    12537569    30086797    8387152    26812285   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973412    EFA12510.2    KQ973342    KXZ75569.1    GGMS01002955    MBY72158.1    GALX01005299    JAB63167.1    GGMS01006359    MBY75562.1    KQ971729    KYB24751.1    GGMR01015412    MBY28031.1    GGMR01006581    MBY19200.1    ABLF02042385    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    GFXV01007093    MBW18898.1    ABLF02040174    ABLF02040183    ABLF02055266    GBYB01008290    JAG78057.1    KK119261    KFM75202.1    GECU01013097    JAS94609.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMS01018022    MBY87225.1    GEZM01084970    JAV60359.1    NNAY01003095    OXU19992.1    GBBI01004395    JAC14317.1    ABLF02016634    GEZM01084969    JAV60363.1    GFTR01008038    JAW08388.1    GFXV01002840    MBW14645.1    GBBI01001646    JAC17066.1    AY060438    AAL25477.1    KK115285    KFM64681.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01000625    MBY69828.1    GGMR01018716    MBY31335.1    GGMR01000005    MBY12624.1    GFTR01008262    JAW08164.1    GGMR01000676    MBY13295.1    RPOV01000134    RPJ78669.1    KK118005    KFM71947.1    GGMR01011511    MBY24130.1    GGMR01013409    MBY26028.1    GGMR01019198    MBY31817.1    GFTR01008271    JAW08155.1    KK113281    KFM59799.1    GGMS01005381    MBY74584.1    GBBI01003810    JAC14902.1    ABLF02003242    ABLF02006260    ABLF02042516    NEVH01006736    PNF36716.1    GGMR01012443    MBY25062.1    ABLF02033757    GGMS01002786    MBY71989.1    GGMR01014053    MBY26672.1    S59870    AAB26437.2    GFTR01008246    JAW08180.1    GBBI01001699    JAC17013.1    GGMR01000086    MBY12705.1    ABLF02017543    ABLF02017549    ABLF02017551    ABLF02021996    GGMR01000226    MBY12845.1    ABLF02013806    ABLF02016612    GFTR01007929    JAW08497.1    KF280391    AIE77315.1    GEDC01029594    JAS07704.1    GGMS01015632    MBY84835.1    ABLF02032508    ABLF02034467   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000054359    UP000215335    + More
UP000235965   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
D7EM17   A0A139W8G9   A0A2S2Q352   V5GNJ2   A0A2S2QEE0   A0A139WA11   A0A2S2PEZ9   K7IN67   A0A2S2NPT6   X1WVL6   X1WKS2   A0A2H8U0H5   J9KLB1   A0A0C9RJA4   A0A087UCW3   A0A1B6J5Z9   J9KKL3   A0A2S2RB48   A0A1Y1KFT3   A0A232ENU1   A0A023EYS8   X1WXE6   A0A1Y1KFR3   A0A224XF24   A0A2H8TKI9   A0A023F6S4   Q95SX7   A0A087THU2   J9LC21   A0A2S2PWA8   A0A2S2PPK8   A0A2S2N629   A0A224XB44   A0A2S2N814   A0A3N5Z7I3   A0A087U3K8   A0A2S2P3X8   A0A2S2PA10   A0A2S2PR14   A0A224X6S1   A0A087T3W0   A0A2S2QA24   A0A023F069   X1WR00   A0A2J7R7D0   A0A2S2P6S3   J9KC83   A0A2S2Q2R8   A0A2S2PBB4   Q07995   A0A224XIB0   A0A023F700   A0A2S2N6C8   J9K7I4   A0A2S2N6Q7   X1WQ25   A0A224X7Z3   A0A0H3UA66   A0A1B6C2V8   A0A2S2R4B7   X1WS66   X1WZH0  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

394

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.65355

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04811

outside

1  -  394

 

 

Pi

126.946507

Theta

19.934041

Tajima's D

1.679786

CLR

0

CSRT

0.828058597070147

Interpretation

Uncertain