Gene

KWMTBOMO13907  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011593

Annotation

Succinate_dehydrogenase_C_[Operophtera_brumata]

Location

Bomo_Chr23(+):12724373-12725530      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.983 PlasmaMembrane   Reliability : 2.311

CDS

ATGGCTTTGTTTAGCTGCACCAGACTGGGAAGTAGAAGCGTACTAGCGAGCTTAAGCAGATTTCCTGCGAGGTTGAACAGCGTGAATTACGCTCAAGCCGCCTCTAATGCCCCTAAAATTACGTTTGTTAAGTTTGAGCCCCCAAAAGAAGAACATCATGATGTGAGGAATGCTAAGCTAAATCGTCCACTTTCTCCTCATTTAACAATATACTCCTTCCAACTGACTGCTGTGCTCTCTATCACACATAGAGCAACTGGAATGATGTTGACAACATATGCCAGCGCACTTGGTATAGGGGCATTAGTGTCACAAAATGATATTTCACATTACATAACCATGATTGAAGGACTCAATCTTTCACCTGCCACTTTATTCTTGGCAAAAGTGATAATTGCTGCACCATTAGGCTACCACTTTGCTAATGGAATTAGACATTTGTATTGGGACACAGCCAAAGGATTGTCGATCAAAGAAGTGTATTCTACAGGATATGCCATGTTGGGGGCTGCTGCTGCCATAACACTTTTCTTAGCCGCATTGTAA

Protein

MALFSCTRLGSRSVLASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGLSIKEVYSTGYAMLGAAAAITLFLAAL

Cofactor

heme

Uniprot

H9JPY8   A0A0L7KSQ0   A0A212FLD7   A0A2H1V4Y9   A0A0L7KSQ7   A0A194RHX8   + More
I4DLC8   A0A2A4IX83   A0A1B0CEV5   I5APV6   A0A0M4ENW7   B3LZ63   A0A1L8E1G7   B4JG59   A0A0A1WQV4   A0A034VEB1   A0A0C9QF60   Q8MYW1   B4LYE6   B4PLI1   B4HID3   Q9VGS3   A0A0L0BZJ7   A0A1W4ULH2   A0A0K8WJ10   A0A1L8EF21   A0A1I8PFB8   A0A0K8VTQ0   D6W9H7   D3TR03   A0A1B0A8P3   A0A1I8N5Q0   A0A1A9V113   D3TR02   A0A1B0GEE3   J3JUT8   A0A336M2H0   A0A0A1WPS4  

Pubmed

19121390    26227816    22118469    26354079    22651552    15632085    + More
17994087    25830018    25348373    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    18362917    19820115    20353571    25315136    22516182    23537049   

EMBL

BABH01015561    JTDY01006095    KOB66293.1    AGBW02007799    OWR54551.1    ODYU01000477    + More
SOQ35334.1    KOB66292.1    KQ460205    KPJ17167.1    AK402096    KQ459601    BAM18718.1    KPI94089.1    NWSH01005123    PCG64425.1    AJWK01009303    CM000070    EIM52991.1    CP012526    ALC45685.1    CH902617    EDV42990.2    GFDF01001598    JAV12486.1    CH916369    EDV93626.1    GBXI01013412    JAD00880.1    GAKP01019054    JAC39898.1    GBYB01002019    JAG71786.1    AY113556    AAM29561.1    CH940650    EDW66942.2    CM000160    EDW96888.1    CH480815    EDW42648.1    AE014297    AY071728    AAF54602.2    AAL49350.1    AGB95854.1    JRES01001197    KNC24664.1    GDHF01004655    GDHF01001168    JAI47659.1    JAI51146.1    GFDG01001666    JAV17133.1    GDHF01034020    GDHF01010086    JAI18294.1    JAI42228.1    KQ971312    EEZ99263.1    EZ423855    ADD20131.1    EZ423854    ADD20130.1    CCAG010012196    APGK01048499    BT127003    KB741112    KB632184    AEE61965.1    ENN73818.1    ERL89631.1    UFQT01000449    SSX24456.1    GBXI01013480    JAD00812.1   

Proteomes

UP000005204    UP000037510    UP000007151    UP000053240    UP000053268    UP000218220    + More
UP000092461    UP000001819    UP000092553    UP000007801    UP000001070    UP000008792    UP000002282    UP000001292    UP000000803    UP000037069    UP000192221    UP000095300    UP000007266    UP000092445    UP000095301    UP000078200    UP000092444    UP000019118    UP000030742   

PRIDE

H9JPY8    Q8MYW1    Q9VGS3   

Pfam

PF01127   Sdh_cyt

Interpro

IPR018495   Succ_DH_cyt_bsu_CS        + More
IPR014314   Succ_DH_cytb556       
IPR000701   SuccDH_FuR_B_TM-su       
IPR034804   SQR/QFR_C/D       

SUPFAM

SSF81343   SSF81343       

Gene 3D

1.20.1300.10    

ProteinModelPortal

H9JPY8   A0A0L7KSQ0   A0A212FLD7   A0A2H1V4Y9   A0A0L7KSQ7   A0A194RHX8   + More
I4DLC8   A0A2A4IX83   A0A1B0CEV5   I5APV6   A0A0M4ENW7   B3LZ63   A0A1L8E1G7   B4JG59   A0A0A1WQV4   A0A034VEB1   A0A0C9QF60   Q8MYW1   B4LYE6   B4PLI1   B4HID3   Q9VGS3   A0A0L0BZJ7   A0A1W4ULH2   A0A0K8WJ10   A0A1L8EF21   A0A1I8PFB8   A0A0K8VTQ0   D6W9H7   D3TR03   A0A1B0A8P3   A0A1I8N5Q0   A0A1A9V113   D3TR02   A0A1B0GEE3   J3JUT8   A0A336M2H0   A0A0A1WPS4  

PDB

2WQY     E-value=7.61536e-21,     Score=243

KEGG

101742176    K00236 succinate dehydrogenase (ubiquinone) cytochrome b560 subunit | (RefSeq) succinate dehydrogena

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0045281   GO:0009055   GO:0006099   GO:0000104   GO:0046872   GO:0016021   GO:0006979   GO:0008340   GO:0005739   GO:0006121   GO:0005749   GO:0008177   GO:0009060   GO:0020037   GO:0016020   GO:0016627   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

Length:

181

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

59.15853

Exp number, first 60 AAs:

0.00473

Total prob of N-in:

0.49866

inside

1  -  80

TMhelix

81  -  103

outside

104  -  117

TMhelix

118  -  140

inside

141  -  160

TMhelix

161  -  180

outside

181  -  181

 

 

Pi

178.351411

Theta

197.20944

Tajima's D

-0.636129

CLR

0

CSRT

0.213089345532723

Interpretation

Uncertain