Gene

KWMTBOMO13904

Pre Gene Modal

BGIBMGA011592

Annotation

oligoribonuclease?_mitochondrial_[Danaus_plexippus]

Location

Bomo_Chr23(+):12691473-12694730      View in EpiBrowser

Full name

Oligoribonuclease, mitochondrial      

Alternative Name

RNA exonuclease 2 homolog
Small fragment nuclease

Location in the cell

Mitochondrial   Reliability : 2.106

CDS

ATGATAAAATCTACGTTATCACGAAGTGCAATAACGTTCTTAACTCGTAATTTGTCCATGTCTCCGAAAATAATGATGAAAAAAAATACTAAAGTTGACATAGCTCAGAGGATTGTATGGATGGATCTTGAAATGACAGGACTTGACATTGAAAATGACCACATAATGGAAATAGCGTGTCTTGTGACAGATGCACAGCTAAATGTAGTGGCGACAGGTCCCGATATAGTTATAAATCTACCTGAAGTGACTTTAAACAAAATGAATAACTGGTGTAAGGTCCAACACGGCGAGACAGGGTTGACAGAGGCTTGCCTTAAATCAGACACATCATTAGCTGAAGCTGAGAGGATAATTCTGAAGTTTGTCAGTAATCATGTACCAGAGAAAATTTGTCCATTGGCTGGTAACAGTATTTATATGGATAGGATGTTTTTAATAAAGTACATGCCAAAATTAAATGATTATTTACATTATCGTTGTATAGATGTCAGTACAGTTAAAGAATTGGCAAAACGATGGTACCCACGAGAATATTCTTTAATACCCCAAAAAAAATTTGAGCATCGGGCATTAAATGATATTCTTGAGAGCGTCCAAGAACTAAAATATTACAAGGAAAATATATTTAAGACTGTATTATAA

Protein

MIKSTLSRSAITFLTRNLSMSPKIMMKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIKYMPKLNDYLHYRCIDVSTVKELAKRWYPREYSLIPQKKFEHRALNDILESVQELKYYKENIFKTVL

Description

3'-to-5' exoribonuclease specific for small oligoribonucleotides. Active on small (primarily

Cofactor

Mn(2+)

Subunit

Homotetramer.

Similarity

Belongs to the oligoribonuclease family.

Keywords

Acetylation   Complete proteome   Exonuclease   Hydrolase   Manganese   Mitochondrion   Nuclease   Phosphoprotein   Reference proteome   Transit peptide  

Feature

chain  Oligoribonuclease, mitochondrial

Uniprot

H9JPY7   A0A2A4JF78   A0A2A4JDJ8   A0A194PKX7   S4PYF3   A0A0L7LUA0   + More
A0A194RI98   A0A2H1VBG2   A0A212FLC0   A0A182YI31   D7EID1   J3JUB0   Q6PBY4   A0A182RXG4   A0A182GMZ4   F1QNX9   Q5TPP7   A0A2C9JJU4   T1H003   B0WUV7   A0A182WPN1   A0A1C7CZ40   Q7PD30   A0A3P8T0S0   A0A182SZ86   A0A0L0BUS3   A0A3B3R772   A0A1W4Y4R3   A0A1L8FLB5   Q5PPS2   A0A3B3CE28   A0A2D4JF59   A0A182MQU6   A0A2D0SM69   F6SVD7   B2GUJ8   A3KNF3   G3W1E6   F7BIM0   A0A1Q3EYM3   A0A2H6N5V2   A0A2D4GYC8   A0A1S3RM03   A0A3P8R491   A0A3P9D996   A0A0P7WQW2   W5M347   I3J0Q6   A0A3P8YXH9   U3F6V2   A0A3Q3KBD0   A0A218UPM5   C3YAN6   A0A3B4GSI9   A0A3Q1IKC4   A0A3L8S140   V9L9T9   F6TNT9   A0A1A9Z749   Q16XI3   A0A3M0IU30   A0A1S4FKN6   G3I230   A0A1U7QAF1   V9L7B1   Q16XI2   A0A3R7SHS1   A0A3B4XII0   A0A2K6C5S9   A0A2K6LWG4   A0A2K5ZAG1   A0A096N4L6   A0A2K6QNG0   A0A2K5KUJ7   A0A2K5J1G7   G7PP03   F6UYS2   C1BZF6   A0A2K6TXG1   A0A1S3ELE1   A0A2G8K5F0   A0A3L7H8C2   A0A2Y9DXU0   H0YPC7   M3XXW5   G1PCR8   A0A384C1I1   A0A3Q7QV84   A0A2Y9HQU4   A0A2U3X5D0   A0A3Q7VKI2   A0A287DBC2   L8IVE7   V6F7X8   A2VE52   A0A2K5CAA2   I3MJ74   M3WPD6   H0XGA1   H2LKA6  

EC Number

3.1.-.-

Pubmed

19121390    26354079    23622113    26227816    22118469    25244985    + More
18362917    19820115    22516182    23537049    26483478    23594743    12364791    15562597    20966253    9087549    14747013    17210077    26108605    29240929    24354690    27762356    29451363    17495919    21709235    20431018    25186727    25069045    23915248    18563158    30282656    24402279    17510324    21804562    25362486    17194215    22002653    17431167    25319552    20433749    29023486    29704459    20360741    21993624    24813606    22751099    19393038    17975172    17554307   

EMBL

BABH01015560    NWSH01001810    PCG70052.1    PCG70051.1    KQ459601    KPI94086.1    + More
GAIX01003388    JAA89172.1    JTDY01000111    KOB78796.1    KQ460205    KPJ17164.1    ODYU01001652    SOQ38178.1    AGBW02007799    OWR54548.1    KQ971310    EFA11808.2    BT126823    KB632277    AEE61785.1    ERL91192.1    BC059540    AAH59540.1    JXUM01075433    KQ562886    KXJ74919.1    CU633836    AAAB01008968    EAA13240.3    CAQQ02152329    DS232111    EDS35100.1    AAAB01008410    EAA03378.5    JRES01001300    KNC23787.1    CM004478    OCT72341.1    BC087528    AAH87528.1    IACK01189076    LAA95118.1    AXCM01001478    BC166309    AAI66309.1    BC133810    AAI33811.1    AEFK01114641    AEFK01114642    AEFK01114643    AAMC01104265    GFDL01014656    JAV20389.1    IACI01055453    LAA25255.1    IACJ01159193    LAA64712.1    JARO02007338    KPP64068.1    AHAT01024106    AERX01056723    AERX01056724    AERX01056725    GAEP01001289    JAB53532.1    MUZQ01000188    OWK55725.1    GG666494    EEN62784.1    QUSF01000089    RLV93714.1    JW876236    AFP08753.1    CH477538    EAT39328.1    QRBI01000231    RMB91938.1    JH001108    EGV93268.1    JW875116    AFP07633.1    EAT39326.1    EAT39327.1    QCYY01003991    ROT61779.1    AHZZ02007663    AQIA01022321    AB172554    CM001289    BAE89616.1    EHH56774.1    JSUE03013449    JU333895    JU475079    JV046697    CM001266    AFE77650.1    AFH31883.1    AFI36768.1    EHH23445.1    BT079985    ACO14409.1    MRZV01000864    PIK43246.1    RAZU01000273    RLQ61412.1    ABQF01045915    ABQF01045916    AEYP01026730    AAPE02026650    AGTP01076127    JH880753    ELR59132.1    GJ062397    DAA22392.1    BC133575    AANG04000369    AAQR03115940    AAQR03115941   

Proteomes

UP000005204    UP000218220    UP000053268    UP000037510    UP000053240    UP000007151    + More
UP000076408    UP000007266    UP000030742    UP000075900    UP000069940    UP000249989    UP000000437    UP000007062    UP000076420    UP000015102    UP000002320    UP000075920    UP000075882    UP000265080    UP000075901    UP000037069    UP000261540    UP000192224    UP000186698    UP000261560    UP000075883    UP000221080    UP000002280    UP000007648    UP000008143    UP000087266    UP000265100    UP000265160    UP000034805    UP000018468    UP000005207    UP000265140    UP000261600    UP000197619    UP000001554    UP000261460    UP000265040    UP000276834    UP000092445    UP000008820    UP000269221    UP000001075    UP000189706    UP000283509    UP000261360    UP000233120    UP000233180    UP000233140    UP000028761    UP000233200    UP000233060    UP000233080    UP000009130    UP000233100    UP000006718    UP000233220    UP000081671    UP000230750    UP000273346    UP000248480    UP000007754    UP000000715    UP000001074    UP000261680    UP000291021    UP000286641    UP000248481    UP000245340    UP000286642    UP000005215    UP000009136    UP000233020    UP000011712    UP000005225    UP000001038   

PRIDE

H9JPY7    F1QNX9    G3I230    A2VE52   

Pfam

PF00929   RNase_T

Interpro

IPR022894   Oligoribonuclease        + More
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.30.420.10    

CDD

cd06135  Orn

ProteinModelPortal

H9JPY7   A0A2A4JF78   A0A2A4JDJ8   A0A194PKX7   S4PYF3   A0A0L7LUA0   + More
A0A194RI98   A0A2H1VBG2   A0A212FLC0   A0A182YI31   D7EID1   J3JUB0   Q6PBY4   A0A182RXG4   A0A182GMZ4   F1QNX9   Q5TPP7   A0A2C9JJU4   T1H003   B0WUV7   A0A182WPN1   A0A1C7CZ40   Q7PD30   A0A3P8T0S0   A0A182SZ86   A0A0L0BUS3   A0A3B3R772   A0A1W4Y4R3   A0A1L8FLB5   Q5PPS2   A0A3B3CE28   A0A2D4JF59   A0A182MQU6   A0A2D0SM69   F6SVD7   B2GUJ8   A3KNF3   G3W1E6   F7BIM0   A0A1Q3EYM3   A0A2H6N5V2   A0A2D4GYC8   A0A1S3RM03   A0A3P8R491   A0A3P9D996   A0A0P7WQW2   W5M347   I3J0Q6   A0A3P8YXH9   U3F6V2   A0A3Q3KBD0   A0A218UPM5   C3YAN6   A0A3B4GSI9   A0A3Q1IKC4   A0A3L8S140   V9L9T9   F6TNT9   A0A1A9Z749   Q16XI3   A0A3M0IU30   A0A1S4FKN6   G3I230   A0A1U7QAF1   V9L7B1   Q16XI2   A0A3R7SHS1   A0A3B4XII0   A0A2K6C5S9   A0A2K6LWG4   A0A2K5ZAG1   A0A096N4L6   A0A2K6QNG0   A0A2K5KUJ7   A0A2K5J1G7   G7PP03   F6UYS2   C1BZF6   A0A2K6TXG1   A0A1S3ELE1   A0A2G8K5F0   A0A3L7H8C2   A0A2Y9DXU0   H0YPC7   M3XXW5   G1PCR8   A0A384C1I1   A0A3Q7QV84   A0A2Y9HQU4   A0A2U3X5D0   A0A3Q7VKI2   A0A287DBC2   L8IVE7   V6F7X8   A2VE52   A0A2K5CAA2   I3MJ74   M3WPD6   H0XGA1   H2LKA6  

PDB

6A4A     E-value=2.07772e-42,     Score=430

KEGG

101741230    K13288 oligoribonuclease [EC:3.1.-.-] | (RefSeq) oligoribonuclease, mitochondrial

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0000175   GO:0005739   GO:0005925   GO:0005730   GO:0005759   GO:0005758   GO:0016788   GO:0006811   GO:0016020   GO:0004970   GO:0005234   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Mitochondrion intermembrane space  
Mitochondrion matrix  

Length:

214

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00541

Exp number, first 60 AAs:

0.00267

Total prob of N-in:

0.12222

outside

1  -  214

 

 

Pi

223.933782

Theta

164.288309

Tajima's D

1.091006

CLR

0.171361

CSRT

0.684165791710414

Interpretation

Uncertain