Gene

KWMTBOMO13890

Annotation

retrovirus-related_gag-pol_polyprotein_[Lasius_niger]

Location

Bomo_Chr23(+):12223693-12228157      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.942

CDS

ATGACTTCTAATATTAATATTGATCGACTTACGGGTGATAACTATGACACTTGGAAGATTCACATGCGAGCTATTCTGAAGAAGAATGATTTGTGGGAATACGTATCAGGAAAAATACCGAAACCAATACATTCAGATTCTAAATATTCTGAATGGAATAAAATGGACGGAAAAGCCGAATCGGACATATTGTTAGCTGTCAGCCCGAGCGAGTTAATTGCACTGGATGGTTTAGACTCCTCCAAAGCAATATGGGACAAGTTGAAATCTATGTATGAGTCAAGCGGGCCAGCGCGAAAAGCGTTATTACTAAAGAGACTTGTATTAAATCATATGCCAGAAGATGGAGACCTACGAAAACATATTTCTGATTTTTTCGACTGTGTTAAGAAGCTTAAAGAAATCGGATTGATAGTGATAGATGAGTTGCTTGTTATTTTATTACTTTATAGTTTACCGGATTCGTTCTCAATGTTTCGAACAGCAATGGAATCGCGTGATGATTTACCATCAACTGATGTACTGAAAGTGAAGATTATCGAGGATTATGAAGGTCGGAAGAGTAAGATAATAGACCAGAGGGCTATGTTCGTCAAACGTACCAATATTAAATCAAATGCCAACCCGAAGAAGAACTTCGAACAGCACACAACTAAAAACATTGAGTGCTATCGTTGCGGTCGTCTTGGGCATATGGCGAGAGAGTACAGAACTAAAAACGTGAGTAAGCTTAAACAAAGCTCACATAAAGCAGAATGTAATAGTGATGATGAGCACAAGACAAATATGTTAGTAAGCACCACCAAAGAGGTGATGATAGCCGAGCAGAGAGCTCCTGTATGGTGTATTGACAGTGGATGTACGGGACATATGTGTAACAACAAACAATTGATTAAAGATTTTACTCGAGTTGATACAGACTTGAATTTGGCTAATGGTAAAACTACAAAAATTAGCGGCTCGGGAAAAGTCAGTATTATGGTAGACACAGGCAGCGAAAAGCGCCATGTTGATATTAAAAAAATGTTCTACGTGTCGGATCTACGAACTAATTTATTATCAGTTGCGAAGATGACAGATCACGGGTTTGAAGTTCGCTTCAATAAAAATTATGCAATTGTCATAGATGACAATAATAAGGTTCATATGCGAGCGGATCGAGTTGGTAACTTATACCACGTCCGAATGAGCCAAGATGATGTCAATAATGTTGAAATGGTGAAAAAACCTATAGATATGTGGCACGAGCGCCTCGGCCACCTTAACGAGCGTGATTTGAAGGCAATGGCGAAAAATGGCCTTGTCCATGGCCTATCATTGAAGGACAACGAAAAATTGTCAGAGTGTGAAATATGTATAAGTGAAAAACAGACATGCACGCCTTTTTCTAAAGGAAGCGAAGATCGTACAACTGAACTATTGGAGATCGTGCATACAGATGTGTGCGGACCAATGAGACAACAGTCTATGGGCGGTAAAAAGTACTTTGTCACGTTCATCGACGACAAATCAAGATGGTGTGAAGTATACTTTATTGCTAATAAAAGCGACGTACTTCAAGTTTTCAAAGATTACAAGGCTTACGTGGAAAAATTGACAGGAAATAAGATCAAAAATCTACAATCCGATAACGGTCGAGAATACATTAACAAAGACTTTGATGATTTCTTGAAGAAAGAAGGAATAAGACGGAGGTTGACGGCACCTTATACGCCTCAGCAGAACGGGATTTCGGAGAGAAAGAACAGGACATTGCTAGAGATGGCCCGTTGTATGATGCGTCAGGCGGGAAGCCCTCCTGTTTTTTGGGCTGAAGCAATTAATACTGCTAATTACATAAGGAACCGATGCCCAACTGCAGCTCTTGATGGTCAAATACCATTTACCCTGTGGACAGGAAAGAAACCTACCGTAATCTACATGCGCGTGTTTGGATCGAAAGCGTATTATAAAAACAAAGGAACGCAGAAGAGAAAATTCGAATCAAGTTCAGAGCTTGGAATATTTATGGGCTATGCTACTGAGTCTAAAGCTTACAGAATACATGATCCTAAGACTAGAAGGATCGTCATTTCTCGCGATGTGAAGTTTATGAACGAGACAGCATTCTGTCATGAGTATAAAGAAATACGAAATGATGAAGAAGAGAATTTTGATGATTCGAAAATAGTCGTTGAATTGAAAGGACATGATCAGAAGAAGGAAGATCGAAAAACAAACCCCATGAGAGGGAGAGGAAGACCAAGGATAGTTCGTACTGGCTTAGTGGGAAGACCGCGCAAAGAGTATAAACTAGCTACAAACAGTACAGAGAGTGAAACTGAATCGGAGTATGAAGTAGATAATGAAGAAACGACAGCTGGAATTGCGATTATTGAACCTAAAACATGGAAAGAAATAGAAAAGACTGATGACGAACCTGAATGGCGAAGGGCTTTAGAAGACGAGTATTTGGCACAATTAAAGAATGTTACATGGGAAATAGTCCCACGACCGAAAAATAGAAAAGTGATTGGTAGCAGATTTGTATTTCAAACAAAGAATACAGGGAAGAAAGTACGGCTTGTCGCAAAGGGATGTTCTCAAAGGCCAGGGGAGGATTTTTACGAAACCTCTTCTCCTGTTGTAAGGTCTTCATCTGTGAGACTCATAGCTGCAGTGTCAGCTGAGTTAGGATTAGAGATGCATCAAATGGATGTAGTAACAGCTTACTTAAATGGTACTCTCGAAGAAGATGTATTTATGGAAATACCAGATAAACTATCAGATGTCTTAGAAAGTGTACTAGCAAACCAGAATATTGGATCAAAAAGAGATATTATAAGAGATAAGAATATACTTCATACAGCTAAACGCTGGAACGAAGCATTGAATGAGTGTGAGAATAATGTGTGTTTGTTAAAGAAGTATTTGTATGGTTTGCGTCAATCAGGATTACAGTGGCATAAAAAGTTAGTAGGAAGGTTGAAGAATATTGGTTTTGAAGCGTTACCACAAGAACCTTGTGTGTTTGTTGCGCAAAGGGATGAAAAAATGATGTTAATTGCTATTTATGTAGATGACATTATCCTAGCGACTAATGATGAGGTGTGGTTGAATGATGTTAAGCGTCAGTTATCTAATGCCTTTGAAATGAAGGATATGGGAAAAATCAGTACTTGTTTGGGTATCGAATTTTCACGTGATAAGGAGCATAGAGTGCATTTAAAGCAAGGTGCGTATATAGATAAAGTATTAGAGCGTTATGGTATGAGTGATTGTAAACCTATATCAACACCTATGGATGTGAACGTTAAACTAGAAAAACCCAACAGTGTAAACAATGATGTTATGAGTCAGTACCCTTACCAGAACCTAATAGGTGCCCTTATGTATTTGGCTGTATCTACCAGACCGGATATAGCTTATACTGTAAATTATTTAAGCCAATTTAACACTAATTATGATGTACAGCATTGGAAGGCAGCTAAGCGAGTGTTGAGGTATTTGAAAGGTACATCAACTTTCGGCTTAATGTATGAGAGGACAGGTGTACCATTGTTTGGTGTAGTTGATGCAGACTGGGGTGCAAATACGATTGATCGAAGGTCATATTCCGGTTTTGCATTTATTTTAGCAGGTGCCCCAATTACCTGGGAAGCACGAAAACAGCGTACCGTTGCATTATCGAGCACAGAAGCCGAGTACTTGGCGCTTTCTGAAGCAACTAAGGAAGCTATGTATCTCAGAAATGTGATAAACAATGTTGGTGTAAAATGTGGTTGTGTGACATTATTTAATGACAACCAGGGTGCTATGAAGCTTGCATAG

Protein

MTSNINIDRLTGDNYDTWKIHMRAILKKNDLWEYVSGKIPKPIHSDSKYSEWNKMDGKAESDILLAVSPSELIALDGLDSSKAIWDKLKSMYESSGPARKALLLKRLVLNHMPEDGDLRKHISDFFDCVKKLKEIGLIVIDELLVILLLYSLPDSFSMFRTAMESRDDLPSTDVLKVKIIEDYEGRKSKIIDQRAMFVKRTNIKSNANPKKNFEQHTTKNIECYRCGRLGHMAREYRTKNVSKLKQSSHKAECNSDDEHKTNMLVSTTKEVMIAEQRAPVWCIDSGCTGHMCNNKQLIKDFTRVDTDLNLANGKTTKISGSGKVSIMVDTGSEKRHVDIKKMFYVSDLRTNLLSVAKMTDHGFEVRFNKNYAIVIDDNNKVHMRADRVGNLYHVRMSQDDVNNVEMVKKPIDMWHERLGHLNERDLKAMAKNGLVHGLSLKDNEKLSECEICISEKQTCTPFSKGSEDRTTELLEIVHTDVCGPMRQQSMGGKKYFVTFIDDKSRWCEVYFIANKSDVLQVFKDYKAYVEKLTGNKIKNLQSDNGREYINKDFDDFLKKEGIRRRLTAPYTPQQNGISERKNRTLLEMARCMMRQAGSPPVFWAEAINTANYIRNRCPTAALDGQIPFTLWTGKKPTVIYMRVFGSKAYYKNKGTQKRKFESSSELGIFMGYATESKAYRIHDPKTRRIVISRDVKFMNETAFCHEYKEIRNDEEENFDDSKIVVELKGHDQKKEDRKTNPMRGRGRPRIVRTGLVGRPRKEYKLATNSTESETESEYEVDNEETTAGIAIIEPKTWKEIEKTDDEPEWRRALEDEYLAQLKNVTWEIVPRPKNRKVIGSRFVFQTKNTGKKVRLVAKGCSQRPGEDFYETSSPVVRSSSVRLIAAVSAELGLEMHQMDVVTAYLNGTLEEDVFMEIPDKLSDVLESVLANQNIGSKRDIIRDKNILHTAKRWNEALNECENNVCLLKKYLYGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATNDEVWLNDVKRQLSNAFEMKDMGKISTCLGIEFSRDKEHRVHLKQGAYIDKVLERYGMSDCKPISTPMDVNVKLEKPNSVNNDVMSQYPYQNLIGALMYLAVSTRPDIAYTVNYLSQFNTNYDVQHWKAAKRVLRYLKGTSTFGLMYERTGVPLFGVVDADWGANTIDRRSYSGFAFILAGAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVINNVGVKCGCVTLFNDNQGAMKLA

Uniprot

W8C110   W8C8N7   A0A0J7KDR3   A0A224X581   A0A0V1GS48   A0A0V0V098   + More
A0A0V1NJN8   A0A0J7K7M6   A0A0V0T740   A0A034WVC8   A0A0J7KDV5   A0A0J7KDP1   A0A0J7KH67   A0A0V1APE7   W8B6G9   W8AYT4   A0A069DXI1   A0A0J7KBT5   W8ANX7   B6V6Z8   A0A0A1XLZ7   W8BWJ0   A0A1Y3EJJ4   A0A0A1X768   A0A0K8U6S2   A0A0K8W4G0   W8AL23   W8ADM5   A0A0K8WJW9   A0A0K8U6X2   W8BYI7   W8AQ86   A0A0V0W368   A0A0A1WFC7   A0A194RJV9   A0A2N9GY85   A0A2N9FMR2   A0A2N9HLU0   A0A2N9GLP2   V9H104   A0A2N9IUS6   A0A194RU38   W8BEX4   H6U1F0   H6U1E9   A0A3S3NIE3   A0A151SDY6   A0A0J7K7B7   A0A151RJN4   B8YLY4   B8YLY6   B8YLY3   A0A182GA29   A0A0V1H997   B8YLY5   A0A146LH62   A0A0V0RWJ3   A0A0J7NHJ8   A0A251TN47   Q967L5   T1PKV2   A0A251TCA0   A0A2N9F319   A0A182G1G7   A0A0P6K133   A0A0P6J144   J9KJ72   A0A151T355   A0A0V1GTY0   A0A151S6I6   A0A151QZS0   W8AEF0   A0A2N9ERS9   A0A151TVS9   A0A0N5DDW3   A0A0J7K6W1   A0A1Y1MYL8   A0A151UCJ8   A0A396INR0   Q53ND1   A0A1W7R6H7   A0A1Y1MYL6   A0A0J7K6U3   Q9ZQE9  

Pubmed

24495485    25348373    26334808    25830018    26354079    2456522    + More
1658740    22427337    22057054    19656907    26483478    26823975    28538728    11319273    26999592    28004739    30397259    16188032   

EMBL

GAMC01007164    JAB99391.1    GAMC01002869    JAC03687.1    LBMM01008999    LBMM01007721    + More
KMQ88472.1    KMQ89488.1    GFTR01008771    JAW07655.1    JYDP01000350    KRZ01021.1    JYDN01000113    KRX56900.1    JYDM01000185    KRZ84108.1    LBMM01012368    KMQ86259.1    JYDJ01000518    KRX34768.1    GAKP01000358    JAC58594.1    LBMM01008805    KMQ88628.1    LBMM01008884    KMQ88558.1    LBMM01007580    KMQ89607.1    JYDH01000361    KRY26687.1    GAMC01013937    JAB92618.1    GAMC01015163    JAB91392.1    GBGD01000131    JAC88758.1    LBMM01010043    KMQ87706.1    GAMC01020352    JAB86203.1    FJ238509    ACI62137.1    GBXI01002679    JAD11613.1    GAMC01008929    JAB97626.1    LVZM01013697    OUC43997.1    GBXI01007143    JAD07149.1    GDHF01030254    JAI22060.1    GDHF01006360    JAI45954.1    GAMC01019998    JAB86557.1    GAMC01020355    JAB86200.1    GDHF01000873    JAI51441.1    GDHF01029905    JAI22409.1    GAMC01008189    JAB98366.1    GAMC01018338    JAB88217.1    JYDK01000327    KRX69779.1    GBXI01017107    JAC97184.1    KQ460297    KPJ16236.1    OIVN01002516    SPD04274.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    OIVN01003683    SPD12935.1    OIVN01002055    SPD00174.1    X07656    CAA30503.1    OIVN01006261    SPD29147.1    KQ459875    KPJ19636.1    GAMC01011082    JAB95473.1    JN402333    AFB73912.1    JN402332    AFB73911.1    NCKU01012701    RWS00004.1    KQ483417    KYP53032.1    LBMM01012669    KMQ86061.1    KQ483702    KYP42748.1    FJ544853    ACL97384.1    FJ544856    ACL97386.1    FJ544851    ACL97383.1    JXUM01155348    KQ572178    KXJ68066.1    JYDS01000421    KRZ07267.1    FJ544854    ACL97385.1    GDHC01011760    JAQ06869.1    JYDL01000068    KRX18751.1    LBMM01004924    KMQ91985.1    CM007899    OTG12557.1    AY009101    AAK12626.1    KA648745    AFP63374.1    CM007900    OTG08534.1    OIVN01000521    SPC81512.1    JXUM01136904    KQ568499    KXJ68982.1    GDUN01000215    JAN95704.1    GDUN01000217    JAN95702.1    ABLF02041793    CM003610    KYP61490.1    JYDP01000258    KRZ01816.1    KQ483456    KYP50361.1    KQ484324    KYP35753.1    GAMC01019995    JAB86560.1    OIVN01000269    SPC77391.1    CM003605    KYP71150.1    LBMM01012645    KMQ86082.1    GEZM01017328    JAV90763.1    CM003603    KYP77007.1    PSQE01000003    RHN67289.1    AC134048    DP000010    AAX92941.1    ABA91548.1    GEHC01000879    JAV46766.1    GEZM01017329    JAV90762.1    LBMM01012492    KMQ86193.1    AC006248    AAD17409.1   

Proteomes

UP000036403    UP000055024    UP000054681    UP000054924    UP000055048    UP000054776    + More
UP000243006    UP000054673    UP000053240    UP000285301    UP000075243    UP000069940    UP000249989    UP000054805    UP000054630    UP000215914    UP000007819    UP000046395    UP000265566   

PRIDE

Q9ZQE9   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF14244   Retrotran_gag_3
PF13961   DUF4219
PF00098   zf-CCHC
PF08534   Redoxin
PF00106   adh_short
PF00626   Gelsolin
PF08033   Sec23_BS
PF04500   FLYWCH
PF03159   XRN_N
PF17846   XRN_M

Interpro

IPR036397   RNaseH_sf        + More
IPR025724   GAG-pre-integrase_dom       
IPR013103   RVT_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR029472   Copia-like_N       
IPR025314   DUF4219       
IPR036875   Znf_CCHC_sf       
IPR036291   NAD(P)-bd_dom_sf       
IPR013740   Redoxin       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036249   Thioredoxin-like_sf       
IPR037944   PRX5-like       
IPR007123   Gelsolin-like_dom       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR036180   Gelsolin-like_dom_sf       
IPR012990   Sec23_24_beta_S       
IPR007588   Znf_FLYWCH       
IPR004859   Put_53exo       
IPR041412   Xrn1_helical       
IPR027073   5_3_exoribonuclease       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF51735   SSF51735       
SSF52833   SSF52833       
SSF82754   SSF82754       

Gene 3D

3.30.420.10     3.40.20.10    

CDD

cd03013  PRX5_like

ProteinModelPortal

W8C110   W8C8N7   A0A0J7KDR3   A0A224X581   A0A0V1GS48   A0A0V0V098   + More
A0A0V1NJN8   A0A0J7K7M6   A0A0V0T740   A0A034WVC8   A0A0J7KDV5   A0A0J7KDP1   A0A0J7KH67   A0A0V1APE7   W8B6G9   W8AYT4   A0A069DXI1   A0A0J7KBT5   W8ANX7   B6V6Z8   A0A0A1XLZ7   W8BWJ0   A0A1Y3EJJ4   A0A0A1X768   A0A0K8U6S2   A0A0K8W4G0   W8AL23   W8ADM5   A0A0K8WJW9   A0A0K8U6X2   W8BYI7   W8AQ86   A0A0V0W368   A0A0A1WFC7   A0A194RJV9   A0A2N9GY85   A0A2N9FMR2   A0A2N9HLU0   A0A2N9GLP2   V9H104   A0A2N9IUS6   A0A194RU38   W8BEX4   H6U1F0   H6U1E9   A0A3S3NIE3   A0A151SDY6   A0A0J7K7B7   A0A151RJN4   B8YLY4   B8YLY6   B8YLY3   A0A182GA29   A0A0V1H997   B8YLY5   A0A146LH62   A0A0V0RWJ3   A0A0J7NHJ8   A0A251TN47   Q967L5   T1PKV2   A0A251TCA0   A0A2N9F319   A0A182G1G7   A0A0P6K133   A0A0P6J144   J9KJ72   A0A151T355   A0A0V1GTY0   A0A151S6I6   A0A151QZS0   W8AEF0   A0A2N9ERS9   A0A151TVS9   A0A0N5DDW3   A0A0J7K6W1   A0A1Y1MYL8   A0A151UCJ8   A0A396INR0   Q53ND1   A0A1W7R6H7   A0A1Y1MYL6   A0A0J7K6U3   Q9ZQE9  

PDB

4PA1     E-value=0.00689442,     Score=98

KEGG

101746524    no KO assigned | (RefSeq) switch-associated protein 70-like

GO

GO:0003676   GO:0008270   GO:0015074   GO:0000943   GO:0016491   GO:0016021   GO:0003964   GO:0004527   GO:0006412   GO:0005515   GO:0005524   GO:0016787   GO:0004713   GO:0015930  

PANTHER

PTHR11439   PTHR12341  

Length:

1269

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.34658999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.26884

outside

1  -  1269

 

 

Pi

460.589444

Theta

223.070054

Tajima's D

3.734823

CLR

0.394152

CSRT

0.99630018499075

Interpretation

Uncertain