SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13888  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011435
Annotation
uncharacterized_protein_LOC101739846_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.901
 

Sequence

CDS
ATGAAGTGTCATTACGAAATATTGAACATAGTTAAAGAAGCCAGCGCATCGGAGATAAAAAAAGCCTATCGCCGCCTGGCTCTGCAGTGGCATCCAGATAAAAATTTAGAAAATTTACAAGAAGCAAAAGAACAATTTCAGTTGGTACAAAACGCATACGAAGTCCTCTCCGATCCTCAGGAACGAGCTTGGTATGACAACCATAGGGAACAATTGTTACGTGGGGCAGGCAGTTCATACAATGATGACTCTTTGGATGTATATCCTTACTTCAGTCCTTCCTGCTACAAAGGCTTTGGAGATGACCCTCAAGGATTTTATGGAGTATATGCTGAAGTTTTCTCCAAATTAACAACAGAAGAAATTGACTTCCTTGATGACCCCGAGGATGTAATAAAAATACCCAAGTTTGGTAATTCAACGACAGAATATGAACAAGTACATGAGTTTTATTCTTTTTGGACAGCATTCTCAACTAATAAAAGTTATGTATGGTTAGACCAATATGAAATAAAACAGGGTGACAATCGTAGGGTCATAAAGTTAATGGAAAAGGAAAACAATAAAATTCGACAAAAGGCTCGTAGAGAACGCAATGAGGAGATCAGGAGACTTGCCTGCTTTGTCCGTAGGAAAGATAAAAGAGTTATTGAACACACCAAATTGTTACAAGAGAAGGCTGAAGAAAATAAAAGAAAGGCTGAACAAATGAGAAGGGAAAGAATAATTCAAAGACAAAAGGAAATTGAGGAAGCCAAGAAAAAGGAAGGGGAATCTTCATTTTTACAAAGTGATGAGTATCAGAAAAAGCTTAGTGAAATTGAATCTCTATTGGCTGAAGAGTTTGGATTGTCGTCAGATGACACAATCAGTGAGGGTGGAATGGAAAGCAGCAATGAAGAAAGCTCTAAAACTGAAGAAGTTAGTGAAGCTTCAAAGGCAACAGCAAAATCACCAACAAAATCAAAATCTTCAATGAAAAATCTTTACTGCTCAGCTTGTAACAAATTATTTAAGAATGTAAAATCATTCGAAAACCATGAAAATAGCAAGAAACATAAAGAAAATGTTGCTAAAATGACACTTGATGATGACATAGGGATATCAGATGTTGATGATGAAGAAAACGAGGATGTAGAACAGACTCCAGCTACTCAAGAGGGGCCAAGGGAGCCAGTTAAAATAAACGGACTAACTGAAGATGAAAAGGAACCACTCGGTAATTCCACTTCAGATATTGAAGATAATGATATTAGGGAGACTTTAAGTGATGACTCTGGTAAAGTTAAGCCTCTTCCCAAATGTTTAAAAAAGAAAAAAAACAAAAAGAAGTCTTTCAATCCTATGCCAGAAAGCGAGGGCAATGACAGTCATGATGAAATGAGTTTTAATGAAATTGAAGGCCCATCACGCTGTAGGAAAGCAAAGAAGTTCAATATGCTCAAGAGCCAAATTCAAGCTAAAAAAGAAGCTAATCTTAAGAAGGGAAATCAGTCACAGACATCTACTGAGAATCTCTATGAGGTTTCCAGCACAACACCTACAGATGATGCTTTAGGTGAATCTGCACTGCCCAGAGATAGGCCAGCTTTACCTAAGACACAGAGGACGGTGAAAACGAAAAAACCTATTGATAGGAAACCGGCGCGTATGAAAGCCAGCGAAACCGAAGATTCCAGTACAACACGTTTAAGTTGTGTAGTTTGTGATTCCGATTTTCCATCAAAAAATAAATTGTTCGAGCATTTGAAAATTACAGGCCACTCTGTGCCTCTACCCCATACTAGCTTCACACAATCTAAGAAAGGCAAGAGAGCTAATAGATAA
Protein
MKCHYEILNIVKEASASEIKKAYRRLALQWHPDKNLENLQEAKEQFQLVQNAYEVLSDPQERAWYDNHREQLLRGAGSSYNDDSLDVYPYFSPSCYKGFGDDPQGFYGVYAEVFSKLTTEEIDFLDDPEDVIKIPKFGNSTTEYEQVHEFYSFWTAFSTNKSYVWLDQYEIKQGDNRRVIKLMEKENNKIRQKARRERNEEIRRLACFVRRKDKRVIEHTKLLQEKAEENKRKAEQMRRERIIQRQKEIEEAKKKEGESSFLQSDEYQKKLSEIESLLAEEFGLSSDDTISEGGMESSNEESSKTEEVSEASKATAKSPTKSKSSMKNLYCSACNKLFKNVKSFENHENSKKHKENVAKMTLDDDIGISDVDDEENEDVEQTPATQEGPREPVKINGLTEDEKEPLGNSTSDIEDNDIRETLSDDSGKVKPLPKCLKKKKNKKKSFNPMPESEGNDSHDEMSFNEIEGPSRCRKAKKFNMLKSQIQAKKEANLKKGNQSQTSTENLYEVSSTTPTDDALGESALPRDRPALPKTQRTVKTKKPIDRKPARMKASETEDSSTTRLSCVVCDSDFPSKNKLFEHLKITGHSVPLPHTSFTQSKKGKRANR

Summary

Pfam
PF12171   zf-C2H2_jaz        + More
PF00226   DnaJ
PF12756   zf-C2H2_2
Interpro
IPR022755   Znf_C2H2_jaz        + More
IPR001623   DnaJ_domain       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR018253   DnaJ_domain_CS       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR036869   J_dom_sf       
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2       
SUPFAM
SSF46565   SSF46565        + More
SSF57667   SSF57667       
Gene 3D
PDB
2LGW     E-value=4.4234e-14,     Score=191

Ontologies

Topology

Length:
608
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00230
outside
1  -  608
 
 

Population Genetic Test Statistics

Pi
255.416717
Theta
188.671395
Tajima's D
0.820273
CLR
0.518368
CSRT
0.611919404029798
Interpretation
Uncertain
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