Gene

KWMTBOMO13883

Pre Gene Modal

BGIBMGA011583

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Bombyx_mori]

Location

Bomo_Chr23(+):12076958-12079250      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.311 Nuclear   Reliability : 1.966

CDS

ATGACTAAAGACATAGGACCTTCCGTTCGTGTCTGTTCTTTAAACATAGAAGGCATTACCCAGGCCAAAACTGAATGCATGCTCAGAATTGCCATAGATAATAAGATTGACATCATTCTGCTACAAGAGACCCACACTGCTGACCTCGCGCAACTCGCTAGAAGAGGAACGATTCCCGGCTTCCGCATGATCTGCGCTACATTCCATCCCCAATACGGCACTGCCACATACATACGAGAGGCCCTGCTGCCTTCAGCTTCAATTATATGCACCTCCACAGACACCGAAAACATCGCTATGTCAACGATCCAAGTGGGAGAAATGATAGTTTGTAACCTGTACAAACCTCCGAATAGCACATGGCCCCAACCAGGACTTCCAAACTATGGGCACCCGTCCATTGTAGTAGGCGACTTTAATAGCCACCACACCAGCTGGGGATATAAAAATAATGATGCTAACGGAGAATCTGTTGTCAAGTGGGCAGATGAATCCAGCTACTTCCTGGTCCACTGTAACAAAGACAAAGGCACCGTCAAATCCGCACGCTGGGGTCGTGAATATAACCTGGACCTCGCCTTCGTCTCCTTGGACTGCAAACGCAGACCCCTCCAGGTGAACAGAACTGTACTACAAGACTTTCCACACAGCCAACACCGCCCAGTTCTTCTCGACATCGGCCTGAAAATACTTATCATACAATCATATCCCGCACCACGCTGGAACTTCACTAAAGCTGACTGGGAACGCTATACGAAGACACTCGATGATTCCATTAGGTGGATACCACCCCTTCGGGAAAACTATGAAAGATTCCTAAAGCTAGTACTTTCCACAGCTAAAAAATGCATTCCAAGGGGATACCGGAAGCAATATATACCATGCTGGACTACCAAAACTGAAGCTCTATGGCAAGAGTTCATAACCACTAGCGACCGGAATGTTGCTCACGAACTCATTGAGTCTCTCAATGAAGCACGACAAGCTAAATGGGAAAGCACAGTCCAAGATATGAACTTCACACACTCAAGCCGTAAAGCCTGGCACCTACTTAAACGCTTCACTTCTGGAACTACCGGCCAGAAGAGTGAACCAAAAGTATGCCCCAGTAAAATTGCGGATAGGATTGTAAAACTGTCTAAAGCACCCAGCCACAAAAAACACACCCGTGAGGTGCGTAAGGATCTTAAATCTCTTAAGACAGACACTGCTTCAGACCCTTATTTTAGCCGTCCAGTTACAGCAGACGAGATAACTGCCAGTATCAGAGCTATTAAGGGAAACAAAGCTTGTGGAGAAGACAAAATCTTTCCAGAGTTCATAAAAGACAGTGGACCCCACACCCGTGTGTGGCTCGCGAAATTCCTCACGAATATCATTGACTCTGGAAAAATCCCACTTGCGATGAAACGGGCGAAGATAACGGCAATACTCAAACCTGGTAAGCCGGCTGACAGTGCAGATAGCTATCGCCCCATTGCCCTTTTGAGCGTAATGTATAAGCTACTTGAGCGAATCATACTTAACCGCATTTCACCAACTATAGAAAAACATATTCCTCAAGAGCAAGCTGGATTCCGTCCAGGACGCAGCTGCAGCGATCAAGTGTTAGCACTGACCACACTCTTGGAGAGGGGCTTTAACGAAAACCTCAAGTCGTCAACTGTATTCGTGGACCTAACAGCTGCTTACGACACAGTGTGGCGCCAGGGACTGCTGTACAAACTACTCAAGCTGATCCCCTGTATAAAGATCTACAATGTTATTGAGGACGCCCTTACCAACAGACCATTCCGTGTCCATCTGGGAGACAAGTCTAGCTTATCCAGGGTCCTGAACAACGGCCTCCCGCAGGGTTCAGTCCTCGCACCAACACTCTTCAACGTGTACACCCACGATGTGCCAGAGACGCTCTCCAGGAAATTTGCGTACGCCGACGATCTAGCTCTAGTCGCACAAGGCCGCAGTATAGAGACAACGGAATGTCACCTTGAAAACGACATGGCCACGCTTGATAACTACTTCATTCGATGTCGTTTGTGTCCAAATGCTTCCAAGACGGAAGTCTGCTGTTTCCACCTAAATAACCGACAGGCTAACAAGGAACCCATCTCTCTCTATAGATTATTTCACAAACTGTAA

Protein

MTKDIGPSVRVCSLNIEGITQAKTECMLRIAIDNKIDIILLQETHTADLAQLARRGTIPGFRMICATFHPQYGTATYIREALLPSASIICTSTDTENIAMSTIQVGEMIVCNLYKPPNSTWPQPGLPNYGHPSIVVGDFNSHHTSWGYKNNDANGESVVKWADESSYFLVHCNKDKGTVKSARWGREYNLDLAFVSLDCKRRPLQVNRTVLQDFPHSQHRPVLLDIGLKILIIQSYPAPRWNFTKADWERYTKTLDDSIRWIPPLRENYERFLKLVLSTAKKCIPRGYRKQYIPCWTTKTEALWQEFITTSDRNVAHELIESLNEARQAKWESTVQDMNFTHSSRKAWHLLKRFTSGTTGQKSEPKVCPSKIADRIVKLSKAPSHKKHTREVRKDLKSLKTDTASDPYFSRPVTADEITASIRAIKGNKACGEDKIFPEFIKDSGPHTRVWLAKFLTNIIDSGKIPLAMKRAKITAILKPGKPADSADSYRPIALLSVMYKLLERIILNRISPTIEKHIPQEQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVWRQGLLYKLLKLIPCIKIYNVIEDALTNRPFRVHLGDKSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRKFAYADDLALVAQGRSIETTECHLENDMATLDNYFIRCRLCPNASKTEVCCFHLNNRQANKEPISLYRLFHKL

Uniprot

A0A2S2R253   A0A2W5AJS5   J9LNS0   J9M8I0   A0A2S2QZD0   J9KT55   + More
J9L403   A0A1B0D7V9   X1WLF6   X1WPT5   J9L8V9   J9LDB7   A0A2S2P4T9   J9L1U8   X1X9M3   A0A0B7BQ47   A0A3S1BCT8   A0A3S0ZJL4   A0A0B7BHQ4   A0A0B7BJY7   A0A3S1ASJ4   A0A0B7BMF0  

EMBL

GGMS01014914    MBY84117.1    QFNT01000080    PZO93396.1    ABLF02008383    ABLF02008387    + More
ABLF02008388    ABLF02008389    ABLF02042376    ABLF02043653    ABLF02029964    GGMS01013279    MBY82482.1    ABLF02033421    ABLF02018295    ABLF02048731    AJVK01031149    ABLF02030901    ABLF02059692    ABLF02013865    ABLF02013866    ABLF02059691    ABLF02014865    ABLF02025557    ABLF02067079    ABLF02015872    GGMR01011854    MBY24473.1    ABLF02007188    ABLF02009392    ABLF02042960    HACG01047591    CEK94456.1    RQTK01000174    RUS85319.1    RQTK01001917    RUS68933.1    HACG01045568    CEK92433.1    HACG01045565    CEK92430.1    RQTK01001306    RUS70916.1    HACG01047584    CEK94449.1   

Proteomes

UP000249298    UP000007819    UP000092462    UP000271974   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00514   Arm
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR011989   ARM-like       
IPR000225   Armadillo       
IPR028435   Plakophilin/d_Catenin       
IPR028446   JAC-1       
IPR016024   ARM-type_fold       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF48371   SSF48371       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     1.25.10.10     3.30.420.10    

ProteinModelPortal

A0A2S2R253   A0A2W5AJS5   J9LNS0   J9M8I0   A0A2S2QZD0   J9KT55   + More
J9L403   A0A1B0D7V9   X1WLF6   X1WPT5   J9L8V9   J9LDB7   A0A2S2P4T9   J9L1U8   X1X9M3   A0A0B7BQ47   A0A3S1BCT8   A0A3S0ZJL4   A0A0B7BHQ4   A0A0B7BJY7   A0A3S1ASJ4   A0A0B7BMF0  

PDB

6AR3     E-value=5.50878e-06,     Score=122

KEGG

101737659    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0005913   GO:0010172   GO:0032956   GO:0045296   GO:0098609  

PANTHER

PTHR10372:SF27   PTHR10372  

Length:

713

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01399

Exp number, first 60 AAs:

0.00149

Total prob of N-in:

0.00078

outside

1  -  713

 

 

Pi

1.947572

Theta

3.789268

Tajima's D

0

CLR

0

CSRT

0.390830458477076

Interpretation

Uncertain