Silkworm Genome Informatics Database

Gene

KWMTBOMO13881

Pre Gene Modal

BGIBMGA011439

Annotation

PREDICTED:_delta(14)-sterol_reductase_[Amyelois_transitella]

Location

Bomo_Chr23(-):12059166-12063247 View in EpiBrowser

Full name

Glutathione peroxidase

Location in the cell

Mitochondrial Reliability : 1.221 PlasmaMembrane Reliability : 1.908

CDS

ATGTCTACTCGTAGTGGTAGAATTAGATTGAGTGTTCGGGAGACAAGTCCGGTGCAGACAAAGAAAAGAGTTTCGCCGTCTCGTTCTCCCGCCAGAAGTCGAAAAAACTCCCCTCGAGCAAGGAAGGTATCTCCTGCGCATCCTGCTAAAAAATCGCCCAACCAAAGAACTCCAACAAGAAAGTCGCCTAGCCGAAAAACCCCAACCAATTTTTCTGCTCGCAAGTCTCCTGCTCGTGCTCCTAAAGAGGTAAAGCCTACAGCCGAGGTAGCACCAGAAGTGGTTCGGCAATCACCTTCAAAACGCCCAGCTTTAAAATCCAATTTGTCTATTAAACTAGAAGATTTGACTGCCAATTTTGAAAGCCTACGCAATGCTCGTAACAGACGAATGGATTATACGTTGAGAGATGTTACATCGACTAATAGCCAGATTATAATAGAAAGTGTGAATGGAGTAGAATCTAAAAATTATCACAATCTTAGAAACAGAAGGTCTGTTGAAGAATTACCCCCACGTAGATCGAGTAGACTTCGGGATTTTATTGACAGATTTGAACATGATACTGCTGATGGTATACACAGTATGGGCAGACATAGTGTGACTAAATCAGTTAGTAAGAGCAAATCAGTTGACACATTTTCAGATGAGGAACGTTCAGAGGATGAGAGTAAATCAAGGCCAATTACAAGGAAGCTGGCTACACCAATCAGAAGCAGTGTTAGCACTTTGAAACAAATATCAAGCAAATGGGAATTTGGTGGGAGATTGGGCTCAGCAATTTTAATTTTCCTCATACCAATCACAGTGTTTGCTATACTTATTTCATGTAGCAATAAATGCTCTACTAGTATAGATGTAGCAAAACTTAAGGCTTTCACACCATGGTTCAGTTATAATTCTCTTGCCTTCATCATTGCCCAGATTCTTGTACAATCAGTGTTTTTAGCTGTGCCTGTAATGGGAACGATAGCTGATGGCATGGATGGTACTGATAGAAAATATTGTTTTAATGGATTTTCTGCTTCATTATTTACTGTAAATGCAGTATTTTTATTTGATTACTTGAAAGTAACAAACAAGAATATCCTCATAAATGAATTTATACAACTTTCTATGATTTCTTATATATTGGCCATTTTTTTGAGTATTATTTTGTATCTCAAAAGCAAAGGACTGCAGGAGAAAGAGTTGAATGCATATGGTAAAACTGGCTATATATTGTATGATTTTTTCATGGGTTGTGAAATTCATCCTCACATCAAGGGATTGAATATGAAAATTTTGATCTCCAGAATCTCTAATATCACATCTTTGATTTTAACATTGATTATATTCTCACGACAAACCCTCTTCAACCCAGCTTGGCAAACGTAG

Protein

MSTRSGRIRLSVRETSPVQTKKRVSPSRSPARSRKNSPRARKVSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVAPEVVRQSPSKRPALKSNLSIKLEDLTANFESLRNARNRRMDYTLRDVTSTNSQIIIESVNGVESKNYHNLRNRRSVEELPPRRSSRLRDFIDRFEHDTADGIHSMGRHSVTKSVSKSKSVDTFSDEERSEDESKSRPITRKLATPIRSSVSTLKQISSKWEFGGRLGSAILIFLIPITVFAILISCSNKCSTSIDVAKLKAFTPWFSYNSLAFIIAQILVQSVFLAVPVMGTIADGMDGTDRKYCFNGFSASLFTVNAVFLFDYLKVTNKNILINEFIQLSMISYILAIFLSIILYLKSKGLQEKELNAYGKTGYILYDFFMGCEIHPHIKGLNMKILISRISNITSLILTLIIFSRQTLFNPAWQT

Similarity

Belongs to the glutathione peroxidase family.

Uniprot

A0A2A4JIE1 A0A2H1X3B0 A0A3S2L9A5 A0A0L7LKC4 A0A194PMV6 A0A194RMC6 + More

Pubmed

26227816 26354079

EMBL

NWSH01001408 PCG71344.1 ODYU01013068 SOQ59738.1 RSAL01000081 RVE48557.1 + More
JTDY01000782 KOB75897.1 KQ459601 KPI94064.1 KQ460205 KPJ17141.1

Proteomes

UP000218220 UP000283053 UP000037510 UP000053268 UP000053240

Pfam

PF01222 ERG4_ERG24 + More
PF00255 GSHPx

Interpro

IPR001171   Ergosterol_biosynth_ERG4_ERG24        + More
IPR000889   Glutathione_peroxidase
IPR029760   GPX_CS
IPR036249   Thioredoxin-like_sf
IPR029759   GPX_AS

SUPFAM

SSF52833 SSF52833

CDD

cd00340 GSH_Peroxidase

ProteinModelPortal

A0A2A4JIE1 A0A2H1X3B0 A0A3S2L9A5 A0A0L7LKC4 A0A194PMV6 A0A194RMC6 + More

PDB

4QUV E-value=0.00191142, Score=98

KEGG

101737517 K19532 lamin-B receptor | (RefSeq) lamin-B receptor

GO

GO:0016021 GO:0004601 GO:0004602 GO:0006979 GO:0016020 GO:0005509 GO:0016925 GO:0006412 GO:0005515 GO:0005524 GO:0016787 GO:0004713 GO:0016491 GO:0015930

Length:

458

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

105.34447

Exp number, first 60 AAs:

0

Total prob of N-in:

0.87887

inside

1 - 252

TMhelix

253 - 275

outside

276 - 301

TMhelix

302 - 324

inside

325 - 335

TMhelix

336 - 353

outside

354 - 367

TMhelix

368 - 387

inside

388 - 427

TMhelix

428 - 447

outside

448 - 458

Pi

27.777593

Theta

204.74704

Tajima's D

-2.264611

CLR

0.522248

CSRT

0.00379981000949953

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics