Gene

KWMTBOMO13869

Pre Gene Modal

BGIBMGA002389

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr23(+):11584309-11585383      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.2

CDS

ATGGTCCATGTCCCCAAAGCAAAGCGGACTAAATGGAACAAGAAGGCCAATGAACACATCCTGATTGGATACTCAGAGAGTACCAAAGGATACAGGTTGTACAATGTAAAAACAAAAAATATTACCACTAGCAGGGATGTTGTTATCATGGAGAAAATCAACGACACAGATATGATACAAGCAGTAGTGGAAGAAAAAGAAACTATTCCAAGTGAAGAAGGAATACAAAAATGTGCTGTGACAAGTGAAGATTCCACTTGTGACTCACTAAATAGCACATACATGACAGATGATGCTACATATGTACCAGATGATACCAGTACCACCAGCTCAGATGAATTCTGTGATAGTAAATCGAATCACAAGTCAGAAAATCTGCAGCCAATAATTAAGGTGGAAAAGAGGACTAGGAAGAAACCAGACTGGTATGGGTACAATAACATATGTCAGAGCAGTGAGGAGGTGGACGACAATCTTCTCACTTATGAGGATGTAATGAGAGGATCAGAACAAGAAGAATGGTCAAAAGCCATGAAAGAGGAAATACAATCTTTCCATCAGAATGATGCTTGGGAGTTAGTAGACAGACCCAGTGGTGAAAATATTGTGGCATGCAAATGGGTGTATAAAAAGAAACTTAACAGTGACAACTCAGTGAGATATAGGGCACGGAGTTAG

Protein

MVHVPKAKRTKWNKKANEHILIGYSESTKGYRLYNVKTKNITTSRDVVIMEKINDTDMIQAVVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGENIVACKWVYKKKLNSDNSVRYRARS

Uniprot

H9IYQ5   A0A2A4J6E2   V5GAG2   A0A1Y1NAZ7   A0A1Y1N668   A0A1Y1KL90   + More
A0A182GPU0   A0A0A9XV68   A0A0A9XY84   A0A146LH62   A0A182H4F6   A0A194RJV9   A0A2M4CJW8   A0A034WM55   A0A2M4CK71   A0A1X7U495   T1PKV2   A0A1Y1N932   A0A1Y1N664   A0A182GLR8   A0A151TKT1   A0A151R2G6   A0A151SDY6   A0A151RJN4   A0A182HAC3   A0A1W7R6A5   A0A151U026   A0A2J7RGN5   A0A2J7R937   A0A2J7R668   A0A2J7Q1Z2   A0A2J7R8S8   A0A2J7R8R7   A0A2J7RKJ6   A0A182H8E6   A0A2R6RIX9   A0A2J7PSB4   A0A0J7NHJ8   A0A0J7K416   A0A151R6U8   A0A2K3NXK0   J9L0N0   A0A1Y1MYP5   A0A146M1T4   A0A151RIL1   A0A2R6RYD4   A0A146LHR9   A0A1Y1MYL6   A0A1Y1MYL8   A0A0A9WPH5   A0A0A9YB53   A0A0A9W6P7   A0A0A9WRE3   A0A2Z6NK18   A0A182GFZ6   A0A2R6QHR4   V5G0R8   A0A2N9GK87   A0A2J7QBP6   A0A085N572   A0A151T5R0   A0A2N9G9X7   A0A2N9H5C1   A0A0V0TKD8   A0A151SQX0   A0A2M4CV35   A0A085NU43   A0A0A9YRD9   A0A0V1NVX6   A0A085MVP5   A0A0J7KM48   A0A0V1DG02   A0A0J7K7N3   A0A0J7K761   A0A0P6IU13   A0A0L9T5R0   A0A2A4JRI1   A5BQM4   A0A1J3ENS7   A0A355BBC5   A0A392NGZ4   A0A2M3YZL3   A0A0V0RWJ3   A0A0V1M1K0   A0A355BEE2   A0A0J7K6A2   A0A2M3YZL7   A0A2M4CWP1   A5C546   A0A0J7K6W1   Q6L3N8   A0A0A9YYX8   A0A392MBJ0   A0A0J7K6U3   A0A0V0VZV0   A0A1Y1N3X2  

Pubmed

19121390    28004739    26483478    25401762    26823975    26354079    + More
25348373    22057054    29661190    24500806    28382043    24929829    26999592    26460024    30148503    29922311   

EMBL

BABH01011079    BABH01011080    NWSH01002797    PCG67521.1    GALX01001351    JAB67115.1    + More
GEZM01011855    JAV93396.1    GEZM01011856    JAV93393.1    GEZM01082909    JAV61231.1    JXUM01079187    KQ563112    KXJ74446.1    GBHO01019780    JAG23824.1    GBHO01019781    JAG23823.1    GDHC01011760    JAQ06869.1    JXUM01025282    KQ560717    KXJ81160.1    KQ460297    KPJ16236.1    GGFL01001458    MBW65636.1    GAKP01004084    JAC54868.1    GGFL01001457    MBW65635.1    KA648745    AFP63374.1    GEZM01011857    JAV93390.1    GEZM01011859    JAV93384.1    JXUM01073804    KQ562795    KXJ75116.1    CM003607    KYP67664.1    KQ484186    KYP36645.1    KQ483417    KYP53032.1    KQ483702    KYP42748.1    JXUM01122375    KQ566597    KXJ69988.1    GEHC01000963    JAV46682.1    CM003604    KYP72625.1    NEVH01003760    PNF39996.1    NEVH01006721    PNF37343.1    NEVH01006980    PNF36330.1    NEVH01019375    PNF22597.1    PNF37230.1    PNF37231.1    NEVH01002725    PNF41351.1    JXUM01029822    KQ560865    KXJ80573.1    NKQK01000005    PSS29970.1    NEVH01021934    PNF19224.1    LBMM01004924    KMQ91985.1    LBMM01014433    KMQ85183.1    KQ484038    KYP38095.1    ASHM01002084    PNY07765.1    ABLF02023757    ABLF02028466    ABLF02059696    GEZM01017327    JAV90764.1    GDHC01004875    JAQ13754.1    KQ483722    KYP42321.1    NKQK01000002    PSS35035.1    GDHC01010945    JAQ07684.1    GEZM01017329    JAV90762.1    GEZM01017328    JAV90763.1    GBHO01033237    JAG10367.1    GBHO01016859    JAG26745.1    GBHO01043059    JAG00545.1    GBHO01033235    JAG10369.1    DF974079    GAU44848.1    JXUM01060983    KQ562129    KXJ76624.1    NKQK01000016    PSS08126.1    GALX01004861    JAB63605.1    OIVN01002345    SPD02856.1    NEVH01016296    PNF26014.1    KL367553    KFD64618.1    CM003610    KYP62383.1    OIVN01001656    SPC96275.1    OIVN01002828    SPD06754.1    JYDJ01000231    KRX39500.1    CM003613    KYP57183.1    GGFL01004951    MBW69129.1    KL367475    KFD72989.1    GBHO01008810    JAG34794.1    JYDM01000091    KRZ88014.1    KL367628    KFD61291.1    LBMM01005619    KMQ91367.1    JYDI01000006    KRY60373.1    LBMM01012480    KMQ86201.1    LBMM01012652    KMQ86074.1    GDUN01000695    JAN95224.1    KQ258279    KOM25686.1    NWSH01000816    PCG74073.1    AM467700    CAN72600.1    GEVK01019149    JAU33683.1    DNYX01000169    HBK83011.1    LXQA010039457    MCH99127.1    GGFM01000953    MBW21704.1    JYDL01000068    KRX18751.1    JYDO01000312    KRZ65659.1    DNYX01000353    HBK84078.1    LBMM01013184    KMQ85774.1    GGFM01000952    MBW21703.1    GGFL01005562    MBW69740.1    AM482665    CAN81839.1    LBMM01012645    KMQ86082.1    AC149291    AAT38758.1    GBHO01007301    JAG36303.1    LXQA010007518    MCH84877.1    LBMM01012492    KMQ86193.1    JYDN01000001    KRX68994.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1   

Proteomes

UP000005204    UP000218220    UP000069940    UP000249989    UP000053240    UP000007879    + More
UP000075243    UP000235965    UP000241394    UP000036403    UP000236291    UP000007819    UP000055048    UP000054924    UP000054653    UP000053144    UP000054630    UP000054843    UP000054681   

PRIDE

H9IYQ5   

Pfam

PF00098   zf-CCHC        + More
PF00665   rve
PF07727   RVT_2
PF13976   gag_pre-integrs
PF13961   DUF4219

Interpro

IPR039537   Retrotran_Ty1/copia-like        + More
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR025314   DUF4219       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

H9IYQ5   A0A2A4J6E2   V5GAG2   A0A1Y1NAZ7   A0A1Y1N668   A0A1Y1KL90   + More
A0A182GPU0   A0A0A9XV68   A0A0A9XY84   A0A146LH62   A0A182H4F6   A0A194RJV9   A0A2M4CJW8   A0A034WM55   A0A2M4CK71   A0A1X7U495   T1PKV2   A0A1Y1N932   A0A1Y1N664   A0A182GLR8   A0A151TKT1   A0A151R2G6   A0A151SDY6   A0A151RJN4   A0A182HAC3   A0A1W7R6A5   A0A151U026   A0A2J7RGN5   A0A2J7R937   A0A2J7R668   A0A2J7Q1Z2   A0A2J7R8S8   A0A2J7R8R7   A0A2J7RKJ6   A0A182H8E6   A0A2R6RIX9   A0A2J7PSB4   A0A0J7NHJ8   A0A0J7K416   A0A151R6U8   A0A2K3NXK0   J9L0N0   A0A1Y1MYP5   A0A146M1T4   A0A151RIL1   A0A2R6RYD4   A0A146LHR9   A0A1Y1MYL6   A0A1Y1MYL8   A0A0A9WPH5   A0A0A9YB53   A0A0A9W6P7   A0A0A9WRE3   A0A2Z6NK18   A0A182GFZ6   A0A2R6QHR4   V5G0R8   A0A2N9GK87   A0A2J7QBP6   A0A085N572   A0A151T5R0   A0A2N9G9X7   A0A2N9H5C1   A0A0V0TKD8   A0A151SQX0   A0A2M4CV35   A0A085NU43   A0A0A9YRD9   A0A0V1NVX6   A0A085MVP5   A0A0J7KM48   A0A0V1DG02   A0A0J7K7N3   A0A0J7K761   A0A0P6IU13   A0A0L9T5R0   A0A2A4JRI1   A5BQM4   A0A1J3ENS7   A0A355BBC5   A0A392NGZ4   A0A2M3YZL3   A0A0V0RWJ3   A0A0V1M1K0   A0A355BEE2   A0A0J7K6A2   A0A2M3YZL7   A0A2M4CWP1   A5C546   A0A0J7K6W1   Q6L3N8   A0A0A9YYX8   A0A392MBJ0   A0A0J7K6U3   A0A0V0VZV0   A0A1Y1N3X2  

KEGG

101745188    K12856 pre-mRNA-processing factor 8 | (RefSeq) pre-mRNA-processing-splicing factor 8

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0003964   GO:0004519   GO:0016301  

PANTHER

PTHR11439  

Length:

225

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0005

Exp number, first 60 AAs:

0.0005

Total prob of N-in:

0.31397

outside

1  -  225

 

 

Pi

78.001062

Theta

101.154842

Tajima's D

-0.717727

CLR

0.805029

CSRT

0.191690415479226

Interpretation

Uncertain