Gene

KWMTBOMO13859  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011446

Annotation

ribosomal_protein_S30_[Bombyx_mori]

Location

Bomo_Chr23(-):11389340-11393808      View in EpiBrowser

Full name

40S ribosomal protein S30      

Location in the cell

Nuclear   Reliability : 3.439

CDS

ATGCAGTTGCATATCAGAGGGCAATCGACACACGTCCTGGACGTCAATGGCCAGGAGTCCATTGGTCAGATCAAGGAACGCATTCGTACTCTTGCTGCAGTTGGCGATGAAGACCTTACTCTATCATTATGTGGAGCCCCTTTAGATGATTCATGTCTTGTCTCTGAGCTCTCATCATCTGAACTAGACCTCACAGTGCCATTGCTTGGTGGTAAAGTGCACGGATCTTTGGCTCGTGCAGGTAAAGTCAAAGGACAAACCCCCAAAGTGGAAAAACAACAAAAAAAGAAGAAGAAGACTGGCCGTGCTAAGCGTAGAATTCAGTACAACAGAAGATTTGTCAACGTTGTGCAGACCTTCGGACGTCGTCGCGGACCCAACTCCAATTCATAG

Protein

MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSELDLTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKKKKKTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS

Similarity

Belongs to the eukaryotic ribosomal protein eS30 family.

Feature

chain  40S ribosomal protein S30

Uniprot

H9JPJ1   Q5UAL2   I4DMF7   Q6EV20   I4DII9   A0A194RHU2   + More
A0A2A4JHQ0   A0A212EX77   A0A1E1WCK2   D1LYN0   S4NMW5   Q5MGM2   A0A194PL54   G0ZEC5   E7DZ06   G4XH85   Q4LAX8   Q56FJ2   A0A232F6U9   K7IN60   A0A1J1IXN4   Q4LAX2   A0A0N8EQY2   A0A2P8YZR3   R4V2S0   A0A067RFM0   A0A1D1YUY4   A0A182GBA2   A0A336MQZ1   Q17B17   Q0IEK2   A0A0U2UGM0   A0A023EFS5   Q4LAX5   A0A1Y1MUA7   A0A0U2T711   Q962Q1   A0A0U2LG78   Q4LAX7   A0A1B6MGT7   A0A1B6IE04   R4WCS1   A0A1B6EXR3   A0A0J7KHM7   A0A151X8L0   D6WCG5   R4FMP7   A0A1B6C3Y5   U5EXC7   Q4LAX3   A0A195ELB3   A0A069DN06   A0A0N8AQX4   A0A0P5NSG7   A0A2R7VZX2   A0A0P6FNJ8   T1HIC6   A0A0P4Y6A7   A8CAC6   A0A0P5EWC4   A0A0P6D0G8   A0A2J7PU00   A0A0P5TW00   E2J7E1   W4XPE3   A0A0P5VE10   A0A0P4WNA1   G3CJT2   A0A3B4DCD3   A0A0P5TMS1   A0A0P4ZIQ6   A0A023FD96   A0A0N8D2Z7   Q4LAX6   A0A182YH10   A0A0P5D101   A2IAE2   A0A0P5D033   A0A0P5GUP8   A0A0P5MJD5   A0A0P5P8M1   A0A0N8ASM4   A0A0A9WSW4   A0A0P6GG52   A0A0P5D1F8   A0A0P5EE02   A0A164R027   A0A0P6FLW7   A0A0P5BQE3   A0A0P5UG17   A0A0P5Y309   A0A0P5LHN6   A0A151I6W9   A0A1W4XG20   E9H500   A0A0N7ZS61   A0A151JST2   A0A182R3P2   A0A1S6GLG1  

Pubmed

19121390    22651552    26354079    22118469    23622113    16023793    + More
28648823    20075255    29403074    24845553    26483478    17510324    26621068    24945155    28004739    14668217    23691247    18362917    19820115    26334808    17760985    21058630    25474469    25244985    17437641    25401762    21292972    28043022   

EMBL

BABH01015454    AY769346    AAV34888.1    AK402475    BAM19097.1    AJ783767    + More
CAH04130.1    AK401107    BAM17729.1    KQ460205    KPJ17132.1    NWSH01001527    PCG70960.1    AGBW02011818    OWR46100.1    GDQN01006346    JAT84708.1    GU084304    ACY95337.1    GAIX01014201    JAA78359.1    AY829764    AAV91378.1    KQ459601    KPI94057.1    JF265003    AEL28834.1    HQ424709    ADT80653.1    JF811440    AEP43789.1    AM040024    CAJ01889.1    AY961508    AAX62410.1    NNAY01000810    OXU26385.1    CVRI01000063    CRL04840.1    AM040030    CAJ01895.1    GDIQ01002612    JAN92125.1    PYGN01000264    PSN49730.1    KC632244    AGM32058.1    KK852498    KDR22626.1    GDJX01009458    JAT58478.1    JXUM01052252    KQ561726    KXJ77711.1    UFQT01002216    SSX32944.1    CH477327    EAT43453.1    CH477600    EAT38463.1    EJY57818.1    KT755121    ALS04955.1    JXUM01099918    GAPW01005892    KQ564528    JAC07706.1    KXJ72131.1    AM040027    CAJ01892.1    GEZM01020562    JAV89252.1    KT755431    ALS05265.1    AF400225    AAK92197.1    KT754775    KT754961    KT755054    ALS04888.1    AM040025    CAJ01890.1    GEBQ01004872    JAT35105.1    GECU01022586    GECU01019974    JAS85120.1    JAS87732.1    AK417118    BAN20333.1    GECZ01026953    JAS42816.1    LBMM01007405    KMQ89757.1    KQ982409    KYQ56711.1    KQ971311    EEZ99023.1    GAHY01000893    JAA76617.1    GEDC01029343    GEDC01009057    GEDC01003041    JAS07955.1    JAS28241.1    JAS34257.1    GANO01001018    JAB58853.1    AM040029    CAJ01894.1    KQ978730    KYN28921.1    GBGD01003451    JAC85438.1    GDIQ01251667    JAK00058.1    GDIQ01142551    JAL09175.1    KK854204    PTY13047.1    GDIQ01045537    JAN49200.1    ACPB03009385    GDIP01232054    JAI91347.1    AJVK01007422    EU040041    ABV44731.1    GDIQ01266193    JAJ85531.1    GDIQ01142550    GDIQ01084769    GDIQ01084768    JAN09968.1    NEVH01021216    PNF19807.1    GDIP01121212    JAL82502.1    HP429359    ADN29859.1    AAGJ04167634    GDIP01116416    JAL87298.1    GDIP01252990    JAI70411.1    HP639849    AEM97986.1    GDIP01127613    JAL76101.1    GDIP01212251    JAJ11151.1    GBBI01000013    JAC18699.1    GDIP01073871    JAM29844.1    AM040026    CAJ01891.1    GDIP01162706    JAJ60696.1    EF179456    ABM55462.1    GDIP01168384    JAJ55018.1    GDIQ01236618    JAK15107.1    GDIQ01166591    GDIQ01166590    JAK85134.1    GDIQ01132155    GDIQ01132154    JAL19572.1    GDIQ01246867    JAK04858.1    GBHO01034051    JAG09553.1    GDIQ01035439    JAN59298.1    GDIP01162532    JAJ60870.1    GDIQ01271071    JAJ80653.1    LRGB01002285    KZS08221.1    GDIQ01045538    JAN49199.1    GDIP01196256    JAJ27146.1    GDIP01113515    GDIP01113514    JAL90200.1    GDIP01063721    JAM39994.1    GDIQ01169439    JAK82286.1    KQ978456    KYM93883.1    GL732592    EFX73237.1    GDIP01217849    JAJ05553.1    KQ982014    KYN30649.1    KY314260    AQS22694.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000007151    UP000053268    UP000215335    + More
UP000002358    UP000183832    UP000245037    UP000027135    UP000069940    UP000249989    UP000008820    UP000036403    UP000075809    UP000007266    UP000078492    UP000015103    UP000092462    UP000235965    UP000007110    UP000261440    UP000076408    UP000076858    UP000078542    UP000192223    UP000000305    UP000078541    UP000075900   

PRIDE

H9JPJ1    Q5UAL2   

Pfam

PF04758   Ribosomal_S30        + More
PF00240   ubiquitin
PF15996   PNISR

Interpro

IPR006846   Ribosomal_S30        + More
IPR000626   Ubiquitin_dom       
IPR029071   Ubiquitin-like_domsf       
IPR031937   PNISR       

SUPFAM

SSF54236   SSF54236       

ProteinModelPortal

H9JPJ1   Q5UAL2   I4DMF7   Q6EV20   I4DII9   A0A194RHU2   + More
A0A2A4JHQ0   A0A212EX77   A0A1E1WCK2   D1LYN0   S4NMW5   Q5MGM2   A0A194PL54   G0ZEC5   E7DZ06   G4XH85   Q4LAX8   Q56FJ2   A0A232F6U9   K7IN60   A0A1J1IXN4   Q4LAX2   A0A0N8EQY2   A0A2P8YZR3   R4V2S0   A0A067RFM0   A0A1D1YUY4   A0A182GBA2   A0A336MQZ1   Q17B17   Q0IEK2   A0A0U2UGM0   A0A023EFS5   Q4LAX5   A0A1Y1MUA7   A0A0U2T711   Q962Q1   A0A0U2LG78   Q4LAX7   A0A1B6MGT7   A0A1B6IE04   R4WCS1   A0A1B6EXR3   A0A0J7KHM7   A0A151X8L0   D6WCG5   R4FMP7   A0A1B6C3Y5   U5EXC7   Q4LAX3   A0A195ELB3   A0A069DN06   A0A0N8AQX4   A0A0P5NSG7   A0A2R7VZX2   A0A0P6FNJ8   T1HIC6   A0A0P4Y6A7   A8CAC6   A0A0P5EWC4   A0A0P6D0G8   A0A2J7PU00   A0A0P5TW00   E2J7E1   W4XPE3   A0A0P5VE10   A0A0P4WNA1   G3CJT2   A0A3B4DCD3   A0A0P5TMS1   A0A0P4ZIQ6   A0A023FD96   A0A0N8D2Z7   Q4LAX6   A0A182YH10   A0A0P5D101   A2IAE2   A0A0P5D033   A0A0P5GUP8   A0A0P5MJD5   A0A0P5P8M1   A0A0N8ASM4   A0A0A9WSW4   A0A0P6GG52   A0A0P5D1F8   A0A0P5EE02   A0A164R027   A0A0P6FLW7   A0A0P5BQE3   A0A0P5UG17   A0A0P5Y309   A0A0P5LHN6   A0A151I6W9   A0A1W4XG20   E9H500   A0A0N7ZS61   A0A151JST2   A0A182R3P2   A0A1S6GLG1  

PDB

5VYC     E-value=1.29629e-25,     Score=282

KEGG

692726    K02983 small subunit ribosomal protein S30e | (RefSeq) RpS30; ribosomal protein S30

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0006412   GO:0003735   GO:0022627   GO:0005622   GO:0005515   GO:0005524   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

Length:

130

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00048

Exp number, first 60 AAs:

0

Total prob of N-in:

0.26710

outside

1  -  130

 

 

Pi

368.396322

Theta

212.566732

Tajima's D

2.707379

CLR

0.059634

CSRT

0.959702014899255

Interpretation

Uncertain