Gene

KWMTBOMO13848

Pre Gene Modal

BGIBMGA011569

Annotation

PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]

Location

Bomo_Chr23(+):11049130-11169851      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.418 Mitochondrial   Reliability : 1.53

CDS

ATGGCCTATAAATATCGTGAAGATCTAGTTGGCAAACGATTTCTCGCAGTGAGTGGTTTAACTAAAATTAATGTGAATAGAGTTTCCGAATGGGGTTGGAAAGCTGGTGTTATCAGAGCAGCATCACTCAGAGATAACAAGAATAAGGAACTCCAGGTTTTAGTGGAATACGATGGTGTAGAATGGCAACGACGCGAGTGGGTAGCTGTGTATTCGCGACGAACTTTTCGCGTGTTTTTAGTAGAAAGGACTTTAGTTTGGGCTCCCAGAACCGTCGAGGGAAAAGAAGTGCAATGGCCAGCGTTGACATTCACACAACTTGCAGCTGACCTGACGATAGAGGCTGACGCCCAGCCAGTGGAATATTTGCATGACAAGCAGCTCCAATTTATGGACTACGCTAATCTACTCCCATATCAGAAATGGGACGCTCACCTCGCCGGTTCAGAGTCCGGTGTCGAGTCCGTTACTCTGTCAGCTCTGTCTGCTGAAGCGTCAGAGTGGCGGACTTCCCAAGACGGCCAGAGAATATTAACCACAACGCCGTCGGTGCTGGGTGGATGTAGAGCTCAGGTATACCGCGCCGCAGGAGCCACTCAGTGGTATACGGCGGTCATCGTTGGAGTCAATGAGCATACGGGGGAGCTGACAGTTACCGATGACACTGTTTTAGAAGAACATAGCGAAGATCCGTCTCTAGTTCAAATGAGGCTTCTCGGTGACGGTGTGATAGAATCGATAATGCGAGGAGAAGTTGTGGGCGTTATGCCGCGGAGATCCCGTTCCAACCTTCAAAGGGTTGAGCGGGAAACAACGAAAAGTCCAGCAACTACTGGAAACAGGAAGAAAACAGGAACCGTTAGGAGCAACGGCCAGATTGCTCAAGTTGAACCTACTCCCCCACCGCCTACAGGATCATCACCGGAACGAGACCCGGCTGAAATTAGCCAAAAAGTGCGATACAATAGTTTTAAAATCATGATGAAACCCACTCAAGGTGCCCTCAAATTCCGGTAA

Protein

MAYKYREDLVGKRFLAVSGLTKINVNRVSEWGWKAGVIRAASLRDNKNKELQVLVEYDGVEWQRREWVAVYSRRTFRVFLVERTLVWAPRTVEGKEVQWPALTFTQLAADLTIEADAQPVEYLHDKQLQFMDYANLLPYQKWDAHLAGSESGVESVTLSALSAEASEWRTSQDGQRILTTTPSVLGGCRAQVYRAAGATQWYTAVIVGVNEHTGELTVTDDTVLEEHSEDPSLVQMRLLGDGVIESIMRGEVVGVMPRRSRSNLQRVERETTKSPATTGNRKKTGTVRSNGQIAQVEPTPPPPTGSSPERDPAEISQKVRYNSFKIMMKPTQGALKFR

Uniprot

A0A212EH51   A0A2A4JJF8   A0A1B6L5F4   A0A1B6I7W3   A0A1B6JNN6   A0A088AQ66   + More
A0A139WNI9   A0A139WN32   A0A1B6DJQ3   A0A158ND62   A0A1B6DJN8   A0A0C9R9S2   A0A1Y1LQ77   A0A232FFF7   A0A0A9X2Y6   A0A3L8DQI2   A0A195B5H7   A0A146KUP0   A0A2P2IAS3   A0A0K8T9Y1   A0A0K8T9W6   A0A131ZBQ6   A0A224Z249   T1IIC8   A0A210Q9C8   F4W930   E9I9H7   A0A026WDV4   A0A195F441   A0A151WU44   E2AVL4   A0A195EDX1   L7MJW3   L7MJ95   A0A1S3J155   A0A1S3IZU9   A0A1S3IZB1   A0A131XBM3   A0A154P7C3   A0A0B7BHD0   A0A2C9LIZ7   A0A3P9AA51   A0A3B4CML9   A0A3B4E790   W5MIY4   W5MIW4   A0A1S3QP58   W5UI24   A0A3P8N9M4   A0A2D0S7U7   A0A3P8N9R3   A0A3P9BRP5   A0A3P9BSI4   A0A2D0S7V2   A0A3Q2VGH5   A0A1A8BKQ1   A0A1A8AIU6   A0A3Q0QVL1   A0A3B3R4P4   A0A3B3R5N4   A0A1A8FT17   A0A0Q3REW1   A0A3B4UWK4   A0A2R8QTK3   A0A3B4UWZ5   A0A3Q1FN77   A0A3Q3QJE2   A0A3P8VRI4   A0A3Q3JIP3   A0A3B4ZHM8   A0A3Q1BH92   A0A3Q1CQQ0   A0A0S7GQN2   A0A146VKU5   A0A146ZT90   A0A146VLX7   A0A3Q2NW56   A0A3Q1JG69   A0A3Q1JG76   A0A2K6BIY6   A0A2K5X741   A0A1D5P8D2   F7F8A9   G3UZM1  

Pubmed

22118469    18362917    19820115    21347285    28004739    28648823    + More
25401762    26823975    30249741    26830274    28797301    28812685    21719571    21282665    24508170    20798317    25576852    28049606    15562597    25069045    23127152    25186727    29240929    23594743    24487278    15592404    17431167    19144319    19468303    21183079   

EMBL

AGBW02014956    OWR40817.1    NWSH01001269    PCG71906.1    GEBQ01021028    JAT18949.1    + More
GECU01024707    JAS82999.1    GECU01006825    JAT00882.1    KQ971311    KYB29437.1    KYB29438.1    GEDC01011423    JAS25875.1    ADTU01000926    ADTU01000927    ADTU01000928    ADTU01000929    ADTU01000930    ADTU01000931    ADTU01000932    ADTU01000933    ADTU01000934    ADTU01000935    GEDC01011453    JAS25845.1    GBYB01003551    JAG73318.1    GEZM01055099    JAV73147.1    NNAY01000343    OXU29047.1    GBHO01029578    GBHO01029574    GDHC01014482    JAG14026.1    JAG14030.1    JAQ04147.1    QOIP01000005    RLU22700.1    KQ976598    KYM79530.1    GDHC01019304    JAP99324.1    IACF01005530    LAB71115.1    GBRD01003477    JAG62344.1    GBRD01003478    JAG62343.1    GEDV01000325    JAP88232.1    GFPF01009497    MAA20643.1    AFFK01014253    NEDP02004518    OWF45352.1    GL888002    EGI69212.1    GL761812    EFZ22768.1    KK107293    EZA53209.1    KQ981855    KYN34937.1    KQ982736    KYQ51430.1    GL443122    EFN62530.1    KQ979039    KYN23306.1    GACK01000759    JAA64275.1    GACK01000758    JAA64276.1    GEFH01003527    JAP65054.1    KQ434829    KZC07777.1    HACG01044861    CEK91726.1    AHAT01004091    AHAT01004092    JT415362    AHH41661.1    HADZ01004261    SBP68202.1    HADY01015680    SBP54165.1    HAEB01014747    SBQ61274.1    LMAW01001203    KQK84129.1    CR354401    CR450773    GBYX01450303    JAO31191.1    GCES01068377    JAR17946.1    GCES01017201    JAR69122.1    GCES01068376    JAR17947.1    AQIA01071610    AQIA01071611    AQIA01071612    AQIA01071613    AQIA01071614    AQIA01071615    AQIA01071616    AQIA01071617    AQIA01071618    AQIA01071619    AADN05000334    JSUE03043769    JSUE03043770    JSUE03043771    JSUE03043772    JSUE03043773    AC155712    AC156272   

Proteomes

UP000007151    UP000218220    UP000005203    UP000007266    UP000005205    UP000215335    + More
UP000279307    UP000078540    UP000242188    UP000007755    UP000053097    UP000078541    UP000075809    UP000000311    UP000078492    UP000085678    UP000076502    UP000076420    UP000265140    UP000261440    UP000018468    UP000087266    UP000221080    UP000265100    UP000265160    UP000264840    UP000261340    UP000261540    UP000051836    UP000261420    UP000000437    UP000257200    UP000261600    UP000265120    UP000261400    UP000257160    UP000265000    UP000265040    UP000233120    UP000233100    UP000000539    UP000006718    UP000000589   

PRIDE

G3UZM1   

Pfam

PF02373   JmjC

Interpro

IPR003347   JmjC_dom       

ProteinModelPortal

A0A212EH51   A0A2A4JJF8   A0A1B6L5F4   A0A1B6I7W3   A0A1B6JNN6   A0A088AQ66   + More
A0A139WNI9   A0A139WN32   A0A1B6DJQ3   A0A158ND62   A0A1B6DJN8   A0A0C9R9S2   A0A1Y1LQ77   A0A232FFF7   A0A0A9X2Y6   A0A3L8DQI2   A0A195B5H7   A0A146KUP0   A0A2P2IAS3   A0A0K8T9Y1   A0A0K8T9W6   A0A131ZBQ6   A0A224Z249   T1IIC8   A0A210Q9C8   F4W930   E9I9H7   A0A026WDV4   A0A195F441   A0A151WU44   E2AVL4   A0A195EDX1   L7MJW3   L7MJ95   A0A1S3J155   A0A1S3IZU9   A0A1S3IZB1   A0A131XBM3   A0A154P7C3   A0A0B7BHD0   A0A2C9LIZ7   A0A3P9AA51   A0A3B4CML9   A0A3B4E790   W5MIY4   W5MIW4   A0A1S3QP58   W5UI24   A0A3P8N9M4   A0A2D0S7U7   A0A3P8N9R3   A0A3P9BRP5   A0A3P9BSI4   A0A2D0S7V2   A0A3Q2VGH5   A0A1A8BKQ1   A0A1A8AIU6   A0A3Q0QVL1   A0A3B3R4P4   A0A3B3R5N4   A0A1A8FT17   A0A0Q3REW1   A0A3B4UWK4   A0A2R8QTK3   A0A3B4UWZ5   A0A3Q1FN77   A0A3Q3QJE2   A0A3P8VRI4   A0A3Q3JIP3   A0A3B4ZHM8   A0A3Q1BH92   A0A3Q1CQQ0   A0A0S7GQN2   A0A146VKU5   A0A146ZT90   A0A146VLX7   A0A3Q2NW56   A0A3Q1JG69   A0A3Q1JG76   A0A2K6BIY6   A0A2K5X741   A0A1D5P8D2   F7F8A9   G3UZM1  

KEGG

101737516    K15601 lysine-specific demethylase 3 [EC:1.14.11.-] | (RefSeq) lysine-specific demethylase 3B

GO

GO:0031490   GO:0032454   GO:0005634   GO:0000976   GO:0033169   GO:0000785   GO:0008168   GO:0061515   GO:0030097  

Length:

338

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00385000000000001

Exp number, first 60 AAs:

0.00228

Total prob of N-in:

0.05007

outside

1  -  338

 

 

Pi

238.93656

Theta

194.633999

Tajima's D

0.763295

CLR

0.282183

CSRT

0.591420428978551

Interpretation

Uncertain