SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13823
Pre Gene Modal
BGIBMGA011556
Annotation
PREDICTED:_circadian_clock-controlled_protein-like_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.496 PlasmaMembrane   Reliability : 1.155
 

Sequence

CDS
ATGTCTGTTTATGGTATTACGTTAAGTATTCTTCTACTTTTTTTCCGCAGCGGCTCAACAAAATTAGCACCTGACTACATACATCCATGTAACGACACGTCCAGCGAATGCTTAGTGAAGGCAACACAGGACGCGGTTCCGCATTTCGTAAGGGGTATTCCCGAACTTGACATTCCGACATTAGACCCGTTCGTGATCGAGGAGCTGTCCATACCGTTGAGCGGTGTCAAAGTCACCTTCCTTCAAGGAAAAGTATCTGGATTTAAAAACTGCATAGTCGATAATGTTATATCGGAATTAGATAAACGACATTTCGTGCTCCAATTTCACACTAATTTAACGATCAAAGGACAATATACAGCTGTGGGAAGACTGTTATTATTCCCTATAAACGGAGAGGGTGATGCCACGATAAAATTAACTAACCTGAGGATGAAAGTAGACATCAACACCAAATATATAAAAGGCAAAAACGGACTTCATCACTTCGGATTGAGAAACTACAAATACACCTTTGATTACGGTGACCGGGTTTCCTTTGATTTGCAGAACATATTCAAAGAGAGCAAACAACTTAGTGACACTGTATTAAATTTCCTGAATGAAAACTGGAAAACAGTTGCGGAAGAGTTTGGGAAACCCATCGTGGATTACGCCGTAGAACTGGCTATCAATACCATTAAAAAATTCTTCCTAGCTGTCCCCTACGAAGAACTTATCAACGTTCCGATACCTATATAA
Protein
MSVYGITLSILLLFFRSGSTKLAPDYIHPCNDTSSECLVKATQDAVPHFVRGIPELDIPTLDPFVIEELSIPLSGVKVTFLQGKVSGFKNCIVDNVISELDKRHFVLQFHTNLTIKGQYTAVGRLLLFPINGEGDATIKLTNLRMKVDINTKYIKGKNGLHHFGLRNYKYTFDYGDRVSFDLQNIFKESKQLSDTVLNFLNENWKTVAEEFGKPIVDYAVELAINTIKKFFLAVPYEELINVPIPI

Summary

EMBL
BABH01015388    AGBW02008184    OWR54054.1    NWSH01000154    PCG78989.1    AK401241    + More
BAM17863.1    MF196307    ATU07289.1    KQ461195    KPJ06751.1    KZ149950    PZC76664.1    KQ459600    KPI94189.1    EZ407196    ACX53757.1    AK402095    BAM18717.1    GCVX01000234    JAI17996.1    BABH01015382    KPJ06750.1    GCVX01000231    JAI17999.1    MF196303    ATU07285.1    PCG78990.1    ODYU01002134    SOQ39241.1    KT443978    ANC68526.1    PZC76666.1    AGBW02008844    OWR52406.1    RSAL01000004    RVE54631.1    KQ459037    KPJ04311.1    AGBW02009838    OWR49779.1    KQ460075    KPJ17901.1    OWR54053.1    EU834742    ACF39403.1    GCVX01000226    JAI18004.1    PZC76662.1    PCG78987.1    ODYU01002142    SOQ39253.1    ODYU01001389    SOQ37507.1    NWSH01000134    PCG79201.1    EU834740    ACF39401.1    NWSH01001221    PCG72068.1    AF117578    AAF16700.1    BABH01015389    BABH01015390    BABH01015391    AK401191    BAM17813.1    ODYU01000574    SOQ35570.1    ODYU01012978    SOQ59553.1    RBVL01000123    RKO11885.1    PZC76676.1    KPI94188.1    AB383144    BAH97100.1    AB196700    BAE43408.1    NWSH01000992    PCG73195.1    KT443975    ANC68523.1    JTDY01004884    KOB67634.1    RSAL01000006    RVE54237.1    MF196312    ATU07294.1    EZ407269    ACX53824.1    AGBW02010413    OWR48563.1    GCVX01000229    JAI18001.1    AB196703    BAE43411.1    RVE54627.1    GCVX01000232    JAI17998.1    RVE54626.1    AB383142    BAH97098.1    ODYU01001950    SOQ38859.1    ODYU01006397    SOQ48206.1    NWSH01002968    PCG67183.1    PCG73196.1    PZC76677.1    GCVX01000230    JAI18000.1    KZ149944    PZC76852.1    KPJ04307.1    RSAL01000173    RVE45077.1    AB196706    AB383141    BAE43414.1    BAH97097.1    BABH01000685    EZ407156    ACX53718.1    AK402595    BAM19217.1    PCG67182.1    KQ459582    KPI98776.1    BABH01015366    BABH01015365    ODYU01004270    SOQ43962.1    KQ460202    KPJ17177.1    EZ407252    ACX53809.1    AGBW02009765    OWR49975.1    KZ149964    PZC76238.1    GDQN01000386    JAT90668.1    KQ459299    KPJ01910.1    AB196702    AB383136    BAE43410.1    BAH97092.1    GCVX01000228    JAI18002.1    ODYU01001173    SOQ37016.1    KQ460473    KPJ14399.1    KT443977    ANC68525.1    BABH01039669    BABH01039670    MF196302    ATU07284.1    KPJ06746.1    MF196296    ATU07278.1    KQ459595    KPI95814.1    ODYU01002699    SOQ40537.1    GDQN01009976    JAT81078.1    AK401330    BAM17952.1    MF196305    ATU07287.1   
Pfam
PF06585   JHBP        + More
PF07648   Kazal_2
PF00050   Kazal_1
Interpro
IPR038606   To_sf        + More
IPR010562   Haemolymph_juvenile_hormone-bd       
IPR002350   Kazal_dom       
IPR036058   Kazal_dom_sf       
SUPFAM
SSF100895   SSF100895       
Gene 3D
PDB
4G0S     E-value=1.08554e-44,     Score=451

Ontologies

Topology

SignalP
Position:   1 - 20,         Likelihood:  0.908316
 
 
Length:
246
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.18883
Exp number, first 60 AAs:
0.18508
Total prob of N-in:
0.03287
outside
1  -  246
 
 

Population Genetic Test Statistics

Pi
255.972725
Theta
172.686904
Tajima's D
1.280764
CLR
0.344879
CSRT
0.731113444327784
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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