Gene

KWMTBOMO13813  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011461

Annotation

Replication_factor_C_38kD_subunit_[Operophtera_brumata]

Location

Bomo_Chr23(-):10027333-10028519      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.558

CDS

ATGAGTCTCTGGGTTGATAAACATAGACCAAAAGATTTAATGAAGTTGGATTACCACAAAGAACAAGCTGTACGTCTGAAAAATCTTGTGCAACAAAGTGACTTTCCTCACCTTCTTATTTACGGGCCCTCTGGAGCCGGTAAGAAAACACGAGTTATGTGCTTATTGAGAGAGCTTTATGGATCAGGTGTGGAGCGCTTAAGGCAAGAAACAATGAATTTTACAACACCCTCAAACAAGAAAATCGAAATTATGACAGTTAGCAGTAACTATCACATTGAAGTTAACCCAACCGACGTCGGAATTCATGATCGCGTTGTTATTATGGATTTAGTAAAAAACGTTGCTCAAACTCATCAGATAGATTCAAACGGACAACGTGAATTCAAGGTTGTCATTTTAAATGAAGTAGATGATTTAACCAAGGACGCACAACACGCATTACGTAGAACCATGGAGAAATATGTGGCAACTTGTCGTCTCATACTTATTGCTAATTCTATTTCTAGAGTCATTCCAGCGATAAGATCACGTTGTTTGACGATATCAGTACCTGCACCCACTGAATCTGAAATTGCAACAGTGCTTCAACTTGTTTGTAAAAAGGAATGTCTAAGCTTACCTAATGATTTAGCACTACGTATAGCCAAATCTGCTGATCGTAATTTACGCCGAGCATTACTCATGTGTGAGGCTTGTAAGGTCCAACAATATCCCTTTACACCCGATCAAAAAGTGCCAGAACCGGATTGGCAAACATTCATAAGAGAAACTGCATCAATGATTTTATCAGAACAGTCCCCAAAAAAACTATGTGAAGTACGTCAGAAACTTTATGAACTAATAATACATGGAATACCAACAGAGACTATATTTTCAGGATTACTTAAAGAATTAGTAAGAAATTGTGATATGACTTTAAAATGTCAAGTAGCGAGCTATGCAGCACGATATGAGCACAGGATGCGATTAGGGAATAAGCCAATATTCCACCTTGAAGCTTTTGTTGCTAAATTTATGGCTATTTATAAGAAATTTATGGAAGAATCCTTAGGTGATATGTTTTGA

Protein

MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPTESEIATVLQLVCKKECLSLPNDLALRIAKSADRNLRRALLMCEACKVQQYPFTPDQKVPEPDWQTFIRETASMILSEQSPKKLCEVRQKLYELIIHGIPTETIFSGLLKELVRNCDMTLKCQVASYAARYEHRMRLGNKPIFHLEAFVAKFMAIYKKFMEESLGDMF

Uniprot

H9JPK6   A0A2H1VET7   A0A0L7LB55   A0A2A4J377   A0A194QN09   A0A0N1IN02   + More
A0A2W1BNP5   A0A212FF46   S4PS41   A0A1B6K262   A0A1B6MET9   A0A0A9XZX4   A0A0L7RCN7   A0A154P1F0   A0A088AMB0   A0A2Z5U5W7   A0A2J7RBX2   A0A2A3E9Q3   W8BM93   A0A023F8U2   T1HXK2   A0A0C9PTH6   A0A034VR33   A0A0K8U9I4   K7J3U5   A0A232EN94   A0A310SDS3   R4G867   A0A1I8N0I4   A0A1I8PA97   A0A0P4WGA5   Q171N9   A0A182G4G2   T1J635   A0A2P6KNB6   A0A1Q3EW30   B0W4Q7   A0A182RWG0   A0A182QHZ4   A0A182TIF7   A0A1Y1KNS7   A0A182J3D4   A0A182HZ12   B4KHB1   A0A182NAP1   A0A182X874   A0A182KYN1   A0A182VSK4   A0A182VNJ5   A0A084VYB2   Q7PW91   B4LV30   A0A182LXH0   A0A182YMV0   A0A182JZQ5   A0A2R7WUW4   A0A182PD36   A0A210QYZ4   A0A1S3KC08   B4JBD5   V4AAH2   A0A0N0BJU7   B4P177   B3N4K6   B3MNF7   T2MFG8   Q29M36   B4G9U3   A0A3B0K0I5   A0A182F3M3   A0A1W4VSY2   A0A0J9R0M9   B4MWE4   A0A2M4AVY4   W5JT91   Q9U9Q1   K1PA54   A0A2P8ZA24   A0A336LP83   A0A1B0D8W8   A0A293LK44   Q7KLW6   A0A0M3QTQ6   T1DQ87   A0A1A9Z1Z1   F6TFM2   A0A2R5LIK5   L7MIT3   A0A0B6ZAQ3   F7B8M6   G1KCC9   A0A131YLR7   G3WHH4   B4HX23   A0A1L8DWT5   A0A1Z5L4F8   Q5M830   D3TPG9   A0A2R9AS30   H2Q7E8  

Pubmed

19121390    26227816    26354079    28756777    22118469    23622113    + More
25401762    26760975    24495485    25474469    25348373    20075255    28648823    25315136    17510324    26483478    28004739    17994087    20966253    24438588    12364791    14747013    17210077    25244985    28812685    23254933    17550304    24065732    15632085    22936249    20920257    23761445    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22992520    29403074    17495919    25576852    18464734    26830274    21709235    28528879    15489334    15057822    15632090    20353571    22722832    16136131   

EMBL

BABH01015362    ODYU01001979    SOQ38922.1    JTDY01001884    KOB72640.1    NWSH01003295    + More
PCG66597.1    KQ461195    KPJ06744.1    KQ459037    KPJ04305.1    KZ149950    PZC76679.1    AGBW02008861    OWR52354.1    GAIX01014193    JAA78367.1    GECU01002198    JAT05509.1    GEBQ01005527    JAT34450.1    GBHO01017237    GBRD01018192    JAG26367.1    JAG47635.1    KQ414615    KOC68570.1    KQ434796    KZC05756.1    FX985746    BBA93633.1    NEVH01005889    PNF38336.1    KZ288340    PBC27781.1    GAMC01012084    JAB94471.1    GBBI01000885    JAC17827.1    ACPB03015638    GBYB01004668    GBYB01004670    JAG74435.1    JAG74437.1    GAKP01014927    GAKP01014924    JAC44028.1    GDHF01029076    JAI23238.1    NNAY01003207    OXU19792.1    KQ762882    OAD55317.1    GAHY01001502    JAA76008.1    GDRN01049968    JAI66497.1    CH477449    EAT40715.1    JXUM01042141    KQ561313    KXJ79025.1    JH431870    MWRG01008193    PRD27828.1    GFDL01015569    JAV19476.1    DS231838    EDS33902.1    AXCN02000672    GEZM01082549    JAV61325.1    APCN01005843    CH933807    EDW13328.1    ATLV01018354    KE525231    KFB42956.1    AAAB01008984    EAA14768.4    CH940649    EDW63279.1    AXCM01000619    KK855633    PTY23359.1    NEDP02001185    OWF53912.1    CH916368    EDW02940.1    KB201890    ESO93767.1    KQ435711    KOX79548.1    CM000157    EDW88052.1    CH954177    EDV58918.1    CH902620    EDV32065.1    HAAD01004766    CDG70998.1    CH379060    EAL33859.1    CH479180    EDW29123.1    OUUW01000004    SPP79479.1    CM002910    KMY89706.1    CH963857    EDW76014.1    GGFK01011623    MBW44944.1    ADMH02000214    ETN67356.1    AE014134    AAF53076.2    AHN54347.1    JH817423    EKC18333.1    PYGN01000131    PSN53349.1    UFQS01000040    UFQT01000040    SSW98215.1    SSX18601.1    AJVK01004162    GFWV01004363    MAA29093.1    AF160912    AAD46852.2    CP012523    ALC39299.1    GAMD01002684    JAA98906.1    GGLE01005205    MBY09331.1    GACK01001846    JAA63188.1    HACG01018587    CEK65452.1    GEDV01009095    JAP79462.1    AEFK01117990    AEFK01117991    AEFK01117992    AEFK01117993    CH480818    EDW52568.1    GFDF01003157    JAV10927.1    GFJQ02004677    JAW02293.1    AABR07034939    BC088281    CH474108    AAH88281.1    EDL74921.1    CCAG010022201    EZ423321    ADD19597.1    AJFE02094419    AACZ04071719    AACZ04071720    AACZ04071721    GABC01004673    GABF01000948    GABD01010903    GABE01009834    NBAG03000252    JAA06665.1    JAA21197.1    JAA22197.1    JAA34905.1    PNI60403.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000053825    UP000076502    UP000005203    UP000235965    UP000242457    UP000015103    UP000002358    UP000215335    UP000095301    UP000095300    UP000008820    UP000069940    UP000249989    UP000002320    UP000075900    UP000075886    UP000075902    UP000075880    UP000075840    UP000009192    UP000075884    UP000076407    UP000075882    UP000075920    UP000075903    UP000030765    UP000007062    UP000008792    UP000075883    UP000076408    UP000075881    UP000075885    UP000242188    UP000085678    UP000001070    UP000030746    UP000053105    UP000002282    UP000008711    UP000007801    UP000001819    UP000008744    UP000268350    UP000069272    UP000192221    UP000007798    UP000000673    UP000000803    UP000005408    UP000245037    UP000092462    UP000092553    UP000092445    UP000002280    UP000002279    UP000001646    UP000007648    UP000001292    UP000002494    UP000092444    UP000240080    UP000002277   

PRIDE

H9JPK6    Q9U9Q1    Q7KLW6   

Pfam

PF08542   Rep_fac_C

Interpro

IPR008921   DNA_pol3_clamp-load_cplx_C        + More
IPR027417   P-loop_NTPase       
IPR013748   Rep_factorC_C       
IPR003593   AAA+_ATPase       

SUPFAM

SSF52540   SSF52540        + More
SSF48019   SSF48019       

ProteinModelPortal

H9JPK6   A0A2H1VET7   A0A0L7LB55   A0A2A4J377   A0A194QN09   A0A0N1IN02   + More
A0A2W1BNP5   A0A212FF46   S4PS41   A0A1B6K262   A0A1B6MET9   A0A0A9XZX4   A0A0L7RCN7   A0A154P1F0   A0A088AMB0   A0A2Z5U5W7   A0A2J7RBX2   A0A2A3E9Q3   W8BM93   A0A023F8U2   T1HXK2   A0A0C9PTH6   A0A034VR33   A0A0K8U9I4   K7J3U5   A0A232EN94   A0A310SDS3   R4G867   A0A1I8N0I4   A0A1I8PA97   A0A0P4WGA5   Q171N9   A0A182G4G2   T1J635   A0A2P6KNB6   A0A1Q3EW30   B0W4Q7   A0A182RWG0   A0A182QHZ4   A0A182TIF7   A0A1Y1KNS7   A0A182J3D4   A0A182HZ12   B4KHB1   A0A182NAP1   A0A182X874   A0A182KYN1   A0A182VSK4   A0A182VNJ5   A0A084VYB2   Q7PW91   B4LV30   A0A182LXH0   A0A182YMV0   A0A182JZQ5   A0A2R7WUW4   A0A182PD36   A0A210QYZ4   A0A1S3KC08   B4JBD5   V4AAH2   A0A0N0BJU7   B4P177   B3N4K6   B3MNF7   T2MFG8   Q29M36   B4G9U3   A0A3B0K0I5   A0A182F3M3   A0A1W4VSY2   A0A0J9R0M9   B4MWE4   A0A2M4AVY4   W5JT91   Q9U9Q1   K1PA54   A0A2P8ZA24   A0A336LP83   A0A1B0D8W8   A0A293LK44   Q7KLW6   A0A0M3QTQ6   T1DQ87   A0A1A9Z1Z1   F6TFM2   A0A2R5LIK5   L7MIT3   A0A0B6ZAQ3   F7B8M6   G1KCC9   A0A131YLR7   G3WHH4   B4HX23   A0A1L8DWT5   A0A1Z5L4F8   Q5M830   D3TPG9   A0A2R9AS30   H2Q7E8  

PDB

1SXJ     E-value=1.07665e-74,     Score=712

KEGG

101735712    K10756 replication factor C subunit 3/5 | (RefSeq) replication factor C subunit 3

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0006260   GO:0031391   GO:0005634   GO:0005663   GO:0006261   GO:0006272   GO:0007062   GO:0046683   GO:0043142   GO:0031390   GO:0003689   GO:1900264   GO:0016791   GO:0016075   GO:0005524   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

Length:

355

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11144

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.01947

outside

1  -  355

 

 

Pi

349.050877

Theta

239.092227

Tajima's D

1.541878

CLR

1.430683

CSRT

0.791910404479776

Interpretation

Uncertain