Gene

KWMTBOMO13800  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011467

Annotation

ribosomal_protein_L18A_[Bombyx_mori]

Location

Bomo_Chr23(-):9508679-9512903      View in EpiBrowser

Full name

60S ribosomal protein L18a      

Location in the cell

Mitochondrial   Reliability : 3.527

CDS

ATGAAGGCTAAAGGACAGTTGAGGGAATATGAGGTTATCGGCCGTAAGCTCCCGTCGGAGAACGAGCCCAAACCTCCCTTGTATAAAATGAGAATTTTCTCTCCGGATCCAATTGTCGCCAAATCTCGTTTCTGGTATTTCCTGAGACAACTTAAGAAGTTCAAGAAGACCACTGGTGAAATTGTCTCTATTAAGGAAATTCCAGAGAAAAGCCCCATCAAGATTAAGAATTTTGGTATCTGGCTACGCTATGAGTCTCGTTCAGGTGTACACAACATGTACCGTGAATACCGTGACCTGAGTGTAGGTGGAGCTGTCACTCAGTGCTACAGAGATATGGGAGCTAGACACAGAGCCCGAGCTCATTCAATACAGATTATCAAAGTGGAAGTAATCAAGGCTGCTGCGTGTCGCCGTCCACAGGTCAAACAGTTCCACAACAGCACCATCAGATTCCCATTGCCCAAACGTGTGCACCACTACAAGAGACTTAATACCTTCGCGTACAAGAGGCCTAGCACTTACTTCTTGTAA

Protein

MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPIKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYFL

Similarity

Belongs to the eukaryotic ribosomal protein eL20 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L18a

Uniprot

H9JPL2   Q5UAS0   A0A1E1WLX0   G0ZEI3   A0A3G1T1L8   S4PH59   + More
E7DZ65   A0A2H1WGA5   Q8WQI7   D1LYQ6   A0A2A4JFT9   A0A212EN28   Q6F445   I4DMN7   A0A194RQV5   I4DIH9   A0A1W4WZC2   Q0PXZ0   A0A088A7V4   A0A0X7YC71   E2A942   E2AX84   E2BN93   A0A3L8D5S3   K7IS92   A0A3L8DZF1   R4WI60   Q4GXG5   D6WCL3   A0A1L8DS66   A0A1Y1LUA7   A0A232FB07   K7ISF2   Q56FI7   T1P7Q3   Q4GXG4   J3JVP2   A0A0V0G2W4   A0A171B883   A0A069DQ01   A0A1I8P9K2   A0A1L8EFJ8   A6YPQ7   R4G4G5   A0A1A9X3K5   A0A154PGL7   A0A0K8TR28   A0A1L8EHV4   W8CDB1   A0A0K8WMN9   A0A034W4D4   D3TQX4   A0A1A9YFW9   A0A1A9UP08   A0A1B0C5W2   A0A067R859   A0A1B6DRV1   T1GB08   A0A2P8ZFQ4   F4X4V3   V5H556   A0A1B0GBX9   A0A0C9RRK6   E2BN94   A0A1B6FTA5   B4J4Q4   A0A1B6J717   A0A0L0C4Q1   A0A1L8EHQ2   A0A026VV42   A0A0M4E8I6   E9IGW6   V9IFC9   Q1W288   B3ME21   B4MQM0   A0A023FD44   A0A3B0J2C4   Q291B1   B4GAZ1   A0A0T6AYN8   B4LQ31   B4KM09   A0A1W4VDQ3   B4P5F2   B4HMW4   B3NMJ0   B4QB93   P41093   A0A146L347   Q6XIM5   A0A0A9W0T7   R4G8Z2   Q1ZZQ9   A0A2H8U141   A0A2A3EPJ4   A0A1D1ZFQ1   A0A226E1F0   A0A1A9ZYS0   U5EZ46  

Pubmed

19121390    23622113    14668217    22118469    22651552    26354079    + More
20798317    30249741    20075255    23691247    18362917    19820115    28004739    28648823    25315136    22516182    23537049    26334808    18207082    26369729    24495485    25348373    20353571    24845553    29403074    21719571    17994087    26108605    24508170    21282665    25474469    15632085    17550304    22936249    8018724    10731132    12537572    12537569    23636399    26823975    14525923    25401762   

EMBL

BABH01015306    BABH01015307    AY769288    AAV34830.1    GDQN01003203    JAT87851.1    + More
JF265061    AEL28892.1    MG992424    AXY94862.1    GAIX01005910    JAA86650.1    HQ424768    ADT80712.1    ODYU01008375    SOQ51912.1    AY072289    GU084330    ACY95363.1    NWSH01001648    PCG70568.1    AGBW02013730    OWR42905.1    AB180445    BAD26689.1    AK402555    BAM19177.1    KQ459833    KPJ19862.1    AK401097    KQ459037    BAM17719.1    KPJ04296.1    DQ673396    ABG81969.1    KC507342    AHB12465.1    GL437711    EFN70027.1    GL443520    EFN61967.1    GL449385    EFN82855.1    QOIP01000013    RLU15586.1    QOIP01000002    RLU25824.1    AK417035    BAN20250.1    AM049058    CAJ17297.1    KQ971311    EEZ98858.1    GFDF01004919    JAV09165.1    GEZM01048325    JAV76601.1    NNAY01000561    OXU27649.1    AY961511    AY961513    AAX62415.1    KA644542    AFP59171.1    AM049059    CAJ17298.1    APGK01047365    BT127310    KB741079    KB632277    AEE62272.1    ENN74051.1    ERL91203.1    GECL01003663    JAP02461.1    GEMB01000156    JAS02957.1    GBGD01003182    JAC85707.1    GFDG01001351    JAV17448.1    EF639068    ABR27953.1    ACPB03017886    GAHY01000791    JAA76719.1    KQ434899    KZC11001.1    GDAI01001228    JAI16375.1    GFDG01000538    JAV18261.1    GAMC01002256    JAC04300.1    GDHF01000094    JAI52220.1    GAKP01009962    JAC48990.1    EZ423826    ADD20102.1    JXJN01026264    KK852818    KDR15731.1    GEDC01008955    JAS28343.1    CAQQ02391152    PYGN01000072    PSN55290.1    GL888679    EGI58526.1    GALX01000538    JAB67928.1    CCAG010005900    GBYB01009986    JAG79753.1    EFN82856.1    GECZ01016341    JAS53428.1    CH916367    EDW00600.1    GECU01012746    JAS94960.1    JRES01000930    KNC27221.1    GFDG01000537    JAV18262.1    KK107796    EZA47602.1    CP012524    ALC41046.1    GL763054    EFZ20272.1    JR043970    AEY59823.1    DQ445539    GEBQ01018063    ABD98777.1    JAT21914.1    CH902619    EDV37566.1    CH963849    EDW74409.1    GBBI01000083    JAC18629.1    OUUW01000001    SPP75265.1    CM000071    EAL25201.1    CH479181    EDW32093.1    LJIG01022499    KRT80249.1    CH940648    EDW60354.1    CH933808    EDW10798.1    CM000158    EDW91783.1    CH480816    EDW48314.1    CH954179    EDV54929.1    CM000362    CM002911    EDX07517.1    KMY94617.1    X75339    AE013599    AY071222    GDHC01017017    JAQ01612.1    AY231805    AAR09828.1    GBHO01042150    GBRD01008351    JAG01454.1    JAG57470.1    GAHY01000127    JAA77383.1    ABLF02033604    DQ416017    AK340287    ABD76364.1    BAH70921.1    GFXV01007747    MBW19552.1    KZ288203    PBC33424.1    GDJX01002345    JAT65591.1    LNIX01000007    OXA51552.1    GANO01001449    JAB58422.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000192223    + More
UP000079169    UP000005203    UP000000311    UP000008237    UP000279307    UP000002358    UP000007266    UP000215335    UP000095301    UP000019118    UP000030742    UP000095300    UP000015103    UP000091820    UP000076502    UP000092443    UP000078200    UP000092460    UP000027135    UP000015102    UP000245037    UP000007755    UP000092444    UP000001070    UP000037069    UP000053097    UP000092553    UP000007801    UP000007798    UP000268350    UP000001819    UP000008744    UP000008792    UP000009192    UP000192221    UP000002282    UP000001292    UP000008711    UP000000304    UP000000803    UP000007819    UP000242457    UP000198287    UP000092445   

PRIDE

H9JPL2    Q5UAS0    Q8WQI7    P41093   

Pfam

PF01775   Ribosomal_L18A        + More
PF00155   Aminotran_1_2

Interpro

IPR028877   50S_L18Ae/Ribosomal_L18a/L20        + More
IPR023573   Ribosomal_L18a//L18Ae/LX       
IPR021138   Ribosomal_L18a/L20_eukaryotes       
IPR010961   4pyrrol_synth_NH2levulA_synth       
IPR015422   PyrdxlP-dep_Trfase_dom1       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR004839   Aminotransferase_I/II       
IPR015424   PyrdxlP-dep_Trfase       

SUPFAM

SSF53383   SSF53383       

Gene 3D

3.40.640.10     3.90.1150.10    

ProteinModelPortal

H9JPL2   Q5UAS0   A0A1E1WLX0   G0ZEI3   A0A3G1T1L8   S4PH59   + More
E7DZ65   A0A2H1WGA5   Q8WQI7   D1LYQ6   A0A2A4JFT9   A0A212EN28   Q6F445   I4DMN7   A0A194RQV5   I4DIH9   A0A1W4WZC2   Q0PXZ0   A0A088A7V4   A0A0X7YC71   E2A942   E2AX84   E2BN93   A0A3L8D5S3   K7IS92   A0A3L8DZF1   R4WI60   Q4GXG5   D6WCL3   A0A1L8DS66   A0A1Y1LUA7   A0A232FB07   K7ISF2   Q56FI7   T1P7Q3   Q4GXG4   J3JVP2   A0A0V0G2W4   A0A171B883   A0A069DQ01   A0A1I8P9K2   A0A1L8EFJ8   A6YPQ7   R4G4G5   A0A1A9X3K5   A0A154PGL7   A0A0K8TR28   A0A1L8EHV4   W8CDB1   A0A0K8WMN9   A0A034W4D4   D3TQX4   A0A1A9YFW9   A0A1A9UP08   A0A1B0C5W2   A0A067R859   A0A1B6DRV1   T1GB08   A0A2P8ZFQ4   F4X4V3   V5H556   A0A1B0GBX9   A0A0C9RRK6   E2BN94   A0A1B6FTA5   B4J4Q4   A0A1B6J717   A0A0L0C4Q1   A0A1L8EHQ2   A0A026VV42   A0A0M4E8I6   E9IGW6   V9IFC9   Q1W288   B3ME21   B4MQM0   A0A023FD44   A0A3B0J2C4   Q291B1   B4GAZ1   A0A0T6AYN8   B4LQ31   B4KM09   A0A1W4VDQ3   B4P5F2   B4HMW4   B3NMJ0   B4QB93   P41093   A0A146L347   Q6XIM5   A0A0A9W0T7   R4G8Z2   Q1ZZQ9   A0A2H8U141   A0A2A3EPJ4   A0A1D1ZFQ1   A0A226E1F0   A0A1A9ZYS0   U5EZ46  

PDB

4V6W     E-value=5.76636e-64,     Score=615

KEGG

692695    K02882 large subunit ribosomal protein L18Ae | (RefSeq) RpL18A; ribosomal protein L18A

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0005840   GO:0003735   GO:0022625   GO:0016853   GO:0002181   GO:0003870   GO:0030170   GO:0033014   GO:0016075   GO:0003677   GO:0005524   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR10052  

Length:

177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00311

Exp number, first 60 AAs:

0.00291

Total prob of N-in:

0.28801

outside

1  -  177

 

 

Pi

420.304489

Theta

220.065841

Tajima's D

3.043726

CLR

0

CSRT

0.981200939953002

Interpretation

Uncertain