Gene

KWMTBOMO13799  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011543

Annotation

dicer-2_[Bombyx_mori]

Location

Bomo_Chr23(+):9481004-9491339      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.708 Golgi   Reliability : 1.633

CDS

ATGGGGATTCGTCCAACATTCTTAATCGGCATACAGTTCACCGAAGAGGAAGTAATGACCGGTGAATTAAGTGAAGAAAGCTGGGAATCTGTGATGAATAATTTCCAAAATGGCATCGCTGAGGCAGAACCCGAAGGCTGTGCCCAAAATTCTATGCAATGCTATGTACATTCACAAGCAGTTGCGGACAAATCTATAGCCGATTCCGTGGAAGCTCTGATCGGCACATATCTACTTAGTGGAGGGATATTAGCAGCTGTAAAACTACTTGAATGGATGGAGGTGTTTCCGCCACAGGATAACTTTGCAGACATGCTCCACAAGCCGGTGCAAACACCGTTATCGAAGAATTTAGCTACCGAAGCTGATATTGACTTTTTACTAAACAATTCGAGAACTGATGTCGAAAAGATCCTAAACTACACGTTCAAAGATTCAACCTTCCTGCTAAACGCTCTGTCTCACTCGTCGTACATCCGGAACAGGCTGACGAGCTCGTACGAGCGCCTCGAGTTCCTCGGGGACGCCATAATCGATTTCCTGGTGACGTCACACATCTTCGAGAACTGTCGCGAACTGAAGCCCGGCGAAATGACTGACCTGAGATCCGCCCTCGTCAATAACGTCACGTTCGCGGCCTACACCGTCAAACTTGGATTGCACAAGTACCTCTGCTCGGAGCTGAACCCTTCGTTGGAGAAGGCGATAATGAAATTCGTCGAACATCAAATAGAAAGAAATCACGAGATTGAGTTCGACGTTCTGTTACTTATCAGCGAAGTCGATTGTCAAGTCGCTGAATATGTTGATGTGCCGAAGGTGTTGAGCGACATTTTCGAAGCATTAGTCGGCGCCGTGTACTTGGACTCGGGCGGGAATCTGGAGACGGTGTGGTCGGTTCTGTACAAGATAATGCACGTCGAGATCGATTCGTTCTCGAAACGCATACCGAAGCAGCCCGTCAAAATTCTATACGAAATGATACACGCTTGTCCGGTTTTCGAAAAACAAATAGTCGTCAATCCGGACATCCCGAAGGTAATGGTGCCGGTTTCGTTCACGAAGAACGACCAGCGTCTCGCCGCCTACGGAGTCGGCGTCAACAAATCGCAAGCGAAGAGGGCCGCCGCGAAATTAGCTCTCAAAATATTAGACTCTTAA

Protein

MGIRPTFLIGIQFTEEEVMTGELSEESWESVMNNFQNGIAEAEPEGCAQNSMQCYVHSQAVADKSIADSVEALIGTYLLSGGILAAVKLLEWMEVFPPQDNFADMLHKPVQTPLSKNLATEADIDFLLNNSRTDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRELKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFVEHQIERNHEIEFDVLLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSGGNLETVWSVLYKIMHVEIDSFSKRIPKQPVKILYEMIHACPVFEKQIVVNPDIPKVMVPVSFTKNDQRLAAYGVGVNKSQAKRAAAKLALKILDS

Similarity

Belongs to the helicase family. Dicer subfamily.

Uniprot

H9JPT8   D7UT11   A0A2A4JFH8   A0A3S2LSR5   V9VKP3   A0A0N1IDN4   + More
A0A2P1DM58   A0A2W1BBL1   A0A212EN34   A0A2H1WFS6   A0A194RUP4   A0A1W4X5J6   A0A0B5G8Z8   A0A0T6B8D4   A0A2P1DM78   K0JC91   A0A2A3E7Y1   A0A0H4SZH3   D6WA66   A0A1Y1MHP6   A0A386QX51   A0A0H4T2N5   A0A0M8ZTS6   A0A088ABX2   A0A1Y1MD92   A0A140H4W2   A0A1Y1MIC1   K9LIV6   E0VG65   A0A1Y1MF64   A0A1B6I6C5   A0A1B6I9V0   A0A2J7PPT2   E2AVZ8   A0A151X4G5   A0A026WZU4   A0A1B6H3B9   A0A3L8DUT7   A0A0S1RSS9   A0A1Y1MCU9   L7Z6F8   A0A1W7HGU9   A0A1W7HGU4   N6UUA9   N6TTD5   A0A154PHY9   U4UQA5   A0A195BR89   A0A158NDW6   A0A0C9QFQ7   A0A0C9RZ40   F4W7V0   A0A1B6FF57   A0A069DXQ4   A0A195D7X2   K7YZ50   A0A2P1DM48   A0A2I6PIZ5   K7J5H5   A0A195ESA7   A0A232F391   B0WTP2   A0A224X595   A0A1L3A5U6   A0A1B6DNE2   A0A023F657   A0A1Q3FBT5   A0A1Q3FBL4   A0A0J7L2K8   A0A1L7NZN0   A0A060H2K4   A0A182GUS7   A0A0A7DVT8   E2BY57   A0A2M4AB33   A0A2M4ABM6   A0A1L8DXZ8   Q174T8   H2BNN0   Q49LL4   W4VRF8   A0A182FU44   A0A182HE85   A0A1W7HGU5   H2BNN1   H2BNM7   W5JN74   A0A0A9YBL6   A0A146M220   A0A0K8S5D2   A0A0A9Y1K7   A0A182PBR4   A0A2R7VQG7   A0A226DKF2   A0A182PZN5   A0A182Y1T1   A0A2S2PGD2   A0A2S2NCI3  

Pubmed

19121390    26354079    28756777    22118469    25541004    22562088    + More
18362917    19820115    28004739    30261185    26864546    20566863    20798317    24508170    30249741    23029445    23537049    21347285    21719571    26334808    23232437    29267401    20075255    28648823    25474469    28034629    24391810    26483478    17510324    20920257    23761445    25401762    26823975    25244985   

EMBL

BABH01015301    AB566386    BAJ11655.1    NWSH01001648    PCG70569.1    RSAL01000242    + More
RVE43638.1    KF717092    AHC98017.1    KQ459037    KPJ04295.1    MG225431    AVK59442.1    KZ150192    PZC72388.1    AGBW02013730    OWR42904.1    ODYU01008375    SOQ51911.1    KQ459833    KPJ19861.1    KP036490    AJF15703.1    LJIG01009215    KRT83525.1    MG225447    AVK59458.1    HE647851    CCF23094.1    KZ288338    PBC27815.1    KP230552    AKQ00041.1    KQ971312    EEZ99277.1    GEZM01034249    JAV83855.1    MH170281    AYE54589.1    KP230553    AKQ00042.1    KQ435851    KOX70787.1    GEZM01034726    GEZM01034725    JAV83643.1    KT191018    AMN92163.1    GEZM01034724    JAV83646.1    JQ037907    AFK73581.1    DS235131    EEB12371.1    GEZM01034723    JAV83648.1    GECU01025228    JAS82478.1    GECU01024018    JAS83688.1    NEVH01022647    PNF18316.1    GL443213    EFN62420.1    KQ982548    KYQ55277.1    KK107054    EZA61552.1    GECZ01000596    JAS69173.1    QOIP01000004    RLU23508.1    KR822176    ALL97694.1    GEZM01034722    JAV83649.1    JX023531    AGE12616.1    LC194140    BAX36479.1    LC194144    BAX36483.1    APGK01013717    KB739085    ENN82392.1    APGK01019652    KB740115    ENN81333.1    KQ434899    KZC10938.1    KB632314    ERL92210.1    KQ976424    KYM88476.1    ADTU01013055    GBYB01013323    JAG83090.1    GBYB01013321    GBYB01013322    JAG83088.1    JAG83089.1    GL887888    EGI69620.1    GECZ01020941    JAS48828.1    GBGD01000076    JAC88813.1    KQ981153    KYN08971.1    JX679512    AFX89025.1    MG225418    AVK59429.1    MG266019    AUM60046.1    KQ981993    KYN30787.1    NNAY01001170    OXU24897.1    DS232090    EDS34500.1    GFTR01008759    JAW07667.1    KU053335    APF46959.1    GEDC01010135    JAS27163.1    GBBI01002022    JAC16690.1    GFDL01010009    JAV25036.1    GFDL01010095    JAV24950.1    LBMM01001117    KMQ96898.1    LC194137    BAW35366.1    KF740508    AIC07485.1    JXUM01089892    KQ563803    KXJ73264.1    KF986375    AIY24625.1    GL451420    EFN79336.1    GGFK01004682    MBW38003.1    GGFK01004697    MBW38018.1    GFDF01002805    JAV11279.1    CH477406    EAT41563.1    JF819823    AEX31249.1    AY713296    AAW48725.1    GANO01003802    JAB56069.1    JXUM01035324    JXUM01035325    JXUM01035326    KQ561055    KXJ79846.1    LC194143    BAX36482.1    JF819824    AEX31250.1    JF819820    JF819821    AEX31247.1    AEX31248.1    ADMH02001044    ETN64340.1    GBHO01016669    JAG26935.1    GDHC01018418    GDHC01005150    JAQ00211.1    JAQ13479.1    GBRD01017340    JAG48487.1    GBHO01016667    JAG26937.1    KK854024    PTY09636.1    LNIX01000017    OXA45600.1    AXCN02001041    GGMR01015856    MBY28475.1    GGMR01002271    MBY14890.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000053240    + More
UP000192223    UP000242457    UP000007266    UP000053105    UP000005203    UP000009046    UP000235965    UP000000311    UP000075809    UP000053097    UP000279307    UP000019118    UP000076502    UP000030742    UP000078540    UP000005205    UP000007755    UP000078492    UP000002358    UP000078541    UP000215335    UP000002320    UP000036403    UP000069940    UP000249989    UP000008237    UP000008820    UP000069272    UP000000673    UP000075885    UP000198287    UP000075886    UP000076408   

PRIDE

H9JPT8    D7UT11   

Pfam

PF00636   Ribonuclease_3        + More
PF02170   PAZ
PF00271   Helicase_C
PF03368   Dicer_dimer
PF04851   ResIII
PF00035   dsrm
PF00270   DEAD

Interpro

IPR000999   RNase_III_dom        + More
IPR014720   dsRBD_dom       
IPR011907   RNase_III       
IPR036389   RNase_III_sf       
IPR005034   Dicer_dimerisation_dom       
IPR038248   Dicer_dimer_sf       
IPR006935   Helicase/UvrB_N       
IPR027417   P-loop_NTPase       
IPR003100   PAZ_dom       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR036085   PAZ_dom_sf       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF69065   SSF69065        + More
SSF52540   SSF52540       
SSF101690   SSF101690       

Gene 3D

1.10.1520.10     3.30.160.380    

CDD

cd00593  RIBOc
cd00079  HELICc
cd00048  DSRM

ProteinModelPortal

H9JPT8   D7UT11   A0A2A4JFH8   A0A3S2LSR5   V9VKP3   A0A0N1IDN4   + More
A0A2P1DM58   A0A2W1BBL1   A0A212EN34   A0A2H1WFS6   A0A194RUP4   A0A1W4X5J6   A0A0B5G8Z8   A0A0T6B8D4   A0A2P1DM78   K0JC91   A0A2A3E7Y1   A0A0H4SZH3   D6WA66   A0A1Y1MHP6   A0A386QX51   A0A0H4T2N5   A0A0M8ZTS6   A0A088ABX2   A0A1Y1MD92   A0A140H4W2   A0A1Y1MIC1   K9LIV6   E0VG65   A0A1Y1MF64   A0A1B6I6C5   A0A1B6I9V0   A0A2J7PPT2   E2AVZ8   A0A151X4G5   A0A026WZU4   A0A1B6H3B9   A0A3L8DUT7   A0A0S1RSS9   A0A1Y1MCU9   L7Z6F8   A0A1W7HGU9   A0A1W7HGU4   N6UUA9   N6TTD5   A0A154PHY9   U4UQA5   A0A195BR89   A0A158NDW6   A0A0C9QFQ7   A0A0C9RZ40   F4W7V0   A0A1B6FF57   A0A069DXQ4   A0A195D7X2   K7YZ50   A0A2P1DM48   A0A2I6PIZ5   K7J5H5   A0A195ESA7   A0A232F391   B0WTP2   A0A224X595   A0A1L3A5U6   A0A1B6DNE2   A0A023F657   A0A1Q3FBT5   A0A1Q3FBL4   A0A0J7L2K8   A0A1L7NZN0   A0A060H2K4   A0A182GUS7   A0A0A7DVT8   E2BY57   A0A2M4AB33   A0A2M4ABM6   A0A1L8DXZ8   Q174T8   H2BNN0   Q49LL4   W4VRF8   A0A182FU44   A0A182HE85   A0A1W7HGU5   H2BNN1   H2BNM7   W5JN74   A0A0A9YBL6   A0A146M220   A0A0K8S5D2   A0A0A9Y1K7   A0A182PBR4   A0A2R7VQG7   A0A226DKF2   A0A182PZN5   A0A182Y1T1   A0A2S2PGD2   A0A2S2NCI3  

PDB

6BUA     E-value=5.03093e-50,     Score=499

KEGG

100499206    K11592 endoribonuclease Dicer [EC:3.1.26.-] | (RefSeq) dcr-2; dicer-2

GO

GO:0006396   GO:0016075   GO:0004525   GO:0003723   GO:0003677   GO:0005524   GO:0031047   GO:0016021   GO:0004386   GO:0031054   GO:0005634   GO:0005737   GO:0006309   GO:0004530   GO:0030422   GO:0016442   GO:0016787   GO:0004713   GO:0016491   GO:0015930  

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.2096

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01097

outside

1  -  386

 

 

Pi

315.687643

Theta

180.288861

Tajima's D

2.272671

CLR

0.209913

CSRT

0.921653917304135

Interpretation

Uncertain