Gene

KWMTBOMO13790

Pre Gene Modal

BGIBMGA011541

Annotation

endonuclease-reverse_transcriptase_[Blattella_germanica]

Location

Bomo_Chr23(+):9236674-9239605      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.745

CDS

ATGGATAGTGGTCACGTGCTGTTTTACAGTGGAAATTCTCAGGGCAAGCACCAATATGGAACAGGATTCATGGTTGACGAGAGATATATTGCGAGCGTGATAAGATTTGAAGCTATTTCTGAAAGGCTGAGTATCCTACGGCTGAAGGGTAAATTTGCGAACTTCACACTTATTAACGCCTATGCCCCAACAGAACTGGCCAAAGAGGAAAACAAAGACAGCTTTTATGAAGATCTTGAAGCGGTGATCGATCAAGTACCAGAGTATGATGTCAAGATTATTTTAGGAGACTTTAACGCACAGGTCGGGAAGGAAGACATTTTTGTACCAACTATTGGAAAATATAGCAAGCACGACCAATCAAATGATAATGGTGTAAGGATGATAAGCTTTGCATCTTCCAAATCCTTGGTTGTGAAAAGCACTATGTTTCCGCATAAAGTCATTTATAAAGATACCTGGAAATCCGCTGACGGCGTCACTACTAACCAAATAGATCATGTCCTCGTTGACAATAGGCATAAAAACTGCATAATAGACGTGAGGAGTTTCAGAGGAGCTGACTGTGACAGTGACCACTATATGCTAGGAATCAAAATTAGAGCAAGAATTCAAACATGTAGAAAAGAATCCAGAACACAAAACGAAACAATAGAGCTAAAAAACCTTAAAGATAAAGAAAAGTGTAAATCTTTTCAGATTGAACTACTCAATAGATTTGATACTTTGGAAGTTTCGGATAGTATTGATGAAGAATGGAAACTTATTAGCAACACAGTTAGGGATATTGCATTGAAAACTTTAGGGAAGCGAAAAAAGCGTAATAATAGGAAATGGTGGACAGATGAATGCACCAAGATGATAGAAGAAAGAAGAAAACTAAAAATACAGGCAGAGCAAGATAGTAAGTGGAAGGATGAGTATATGGAAGCTCAAAGAAAAACCAGACAAGTTATAAGAACAGTCAAGCGAGAACACATGAATGACATCATGCAGAATATGGAAAACCTGATAAGAACGAATGAGGCTCGAAAATTCTACCAGGAAATAAGATCGTGTAATGTGGCGTCAGTACTTTCAAAACCTTCTGAATGCCCTCCACCGACGGAAGATTTAGATGACAACCCCCAAGATCCTGCGGAGGAAGAAGAAGTGGAGCCACTGAACTTCGAAGAAATAAAAAACGCTATTATGAGGCTTAAGAACAACAAAGCGCCAGGTATTGACAACCTACCATCTGAACTGTGGAAATACGGCGGAGAAGCCTTGCAGTCCAGATTGTACAATCTTATTAAAATGATATGGGAATCTGAACAACAACCTGTCCAGTGGTATTCGGGGGTCATCTGCCCCATACACAAAAAAGGCAGCCGGAAGAAATGCAGTAACTACAGAGGAATTGCTTTACTACCTACAGCGTACAAAATACTGTCATACGTTTTACTAAGCAGGTTAGAGCCGTATTCAGAAAAAATCATTGCGGATTATCAGTGCGGCTTCAGACGTAATCGTAGTACAGTCGACCAAATCTTTACTCTGAAACAGTTAATGGAGAAAAGATGGGAGTATGCACAAAGTATTCATTCGCTCTTTGTTGATTTTGCTAAGGCCTACGACAGCATAGATAGACCGACTCTATATAGAATCCTCACGCGCTTTAAAATCCCACAGAAACTTGTGAGAATGGTGGAGGTTGCTACTAGGGAAAGTAGAATGACGGTACGAGTTGGCGCTTCTTTCACTGATGAGTTTGACGTTGTGACTGGACTCAGGCAGGGGGACGCTCTGTCACCAATGCTGTTCAACCTGGCACTTGAACACGCCATACGGAAAGTGAACACACTTAGTGGCGGAGTGTGGCTCAACGGACAGCATAGGGTGATAGGATATGCCGATGACCTCGCTCTACTTGGAGAAAGAAAGCAGCACGTTATAGACGCACTCAACTGCCTTCAACAAGAAGCCTCTCGGATTGGCCTTCGCGTGAGCCACGAGAAGACAGAATATCTTCACATGCGTCGATATAAAAACATAAGACGGAAGCGAGAAGACCTAGTGGTGGGAAATACGAGGTTCAAAGGAGTGGCTAAATTCCGGTACCTTGGCTGCACTGTAACAGACACCAATGACAGGGAAGATGAAATCGAAATTCGTATACAAAATACCCTACGATGCAGTGCAGCCCTACACCCGGTTCTCTCTTCGAAGCTACTAAGCAGGCGCACCAAGATTCGGATATACAAGACTCTAGTCAGACCGATCCTATTGTATGGATGCGAAGCATGGACGCTCACACAGAAAGAAGAGGCAAAACTTCTCGTGACGGAGCGAAAGGTATTGAGAAAAATACTAGGACCAGTTCGGAAAGAAGACGGTTCTTGGCACGTCCGGAAAAATAAGGATGTGGAGAGGCTTTTTGGTGAGCCAAATATTCTGGGGGAGATGAAGGCACGGAGGCTCGGATGGCTCGGACATGTAGTACGTATGGAGCAGGATCGGGCTGTGAAACGGGTGTACACGGGTGTACCGGAGGGACGCCGCCCCGTAGGGAGGCCCAAGTACCGCTGGTGTGACGCTGTGGAAGGAAATTTACGGGAGCTCCAAGTGTCGGACTGGCAAGGTGTTGCGCAGCGCCGGGATGAATGGCAAAGCTTATTGTCGGAGGCCAAGACCCACTTCGGGGTCATAGCGCCAGCTCAGTAG

Protein

MDSGHVLFYSGNSQGKHQYGTGFMVDERYIASVIRFEAISERLSILRLKGKFANFTLINAYAPTELAKEENKDSFYEDLEAVIDQVPEYDVKIILGDFNAQVGKEDIFVPTIGKYSKHDQSNDNGVRMISFASSKSLVVKSTMFPHKVIYKDTWKSADGVTTNQIDHVLVDNRHKNCIIDVRSFRGADCDSDHYMLGIKIRARIQTCRKESRTQNETIELKNLKDKEKCKSFQIELLNRFDTLEVSDSIDEEWKLISNTVRDIALKTLGKRKKRNNRKWWTDECTKMIEERRKLKIQAEQDSKWKDEYMEAQRKTRQVIRTVKREHMNDIMQNMENLIRTNEARKFYQEIRSCNVASVLSKPSECPPPTEDLDDNPQDPAEEEEVEPLNFEEIKNAIMRLKNNKAPGIDNLPSELWKYGGEALQSRLYNLIKMIWESEQQPVQWYSGVICPIHKKGSRKKCSNYRGIALLPTAYKILSYVLLSRLEPYSEKIIADYQCGFRRNRSTVDQIFTLKQLMEKRWEYAQSIHSLFVDFAKAYDSIDRPTLYRILTRFKIPQKLVRMVEVATRESRMTVRVGASFTDEFDVVTGLRQGDALSPMLFNLALEHAIRKVNTLSGGVWLNGQHRVIGYADDLALLGERKQHVIDALNCLQQEASRIGLRVSHEKTEYLHMRRYKNIRRKREDLVVGNTRFKGVAKFRYLGCTVTDTNDREDEIEIRIQNTLRCSAALHPVLSSKLLSRRTKIRIYKTLVRPILLYGCEAWTLTQKEEAKLLVTERKVLRKILGPVRKEDGSWHVRKNKDVERLFGEPNILGEMKARRLGWLGHVVRMEQDRAVKRVYTGVPEGRRPVGRPKYRWCDAVEGNLRELQVSDWQGVAQRRDEWQSLLSEAKTHFGVIAPAQ

Uniprot

A0A060Q6A2   A0A2P8ZLT6   A0A2P8Z488   A0A2P8ZFZ0   A0A2P8YWA2   A0A2P8Z313   + More
A0A2P8Y2S1   A0A1B0DRK3   A0A2P8ZCA4   A0A023F0H0   A0A023F0F3   A0A146KNZ7   A0A0U4HM41   D7F170   A0A2P8YLY7   A0A023F0M0   A0A023EZ68   A0A0J7KMY2   A0A2S2PT92   A0A2M4ACI4   J9KNQ8   A0A2M4A3H0   A0A2M4A809   A0A2M4A2X8   A0A2P8XC08   A0A0V0G8V1   A0A2M4CRT4   A0A069DWW0   A0A2P8XRQ1   A0A2M4CRR0   A0A2S2NQ16   A0A2P8ZIH1   A0A2P8YTB7   A0A0V0G616   A0A0K8SN56   J9KHI9   J9L6X2   A0A2P8XT58   J9LFP1   A0A023EZ18   A0A2P8YGI5   T1E1T8   A0A2P8ZAY7   A0A023EX67   A0A0P9A604   A0A0P8XJ08   A0A0N8NZU6   A0A0P8Y0P3   A0A2P8YYC9   A0A2P8YFW0   A0A2S2P2F5   J9L287   A0A0P8XDM7   A0A0P9AMX6   A0A0P9BSL5   A0A0P8XIG1   A0A0P9AAF4   A0A0P8Y7V9   A0A0P8ZWR4   A0A2P8XT91   A0A023EWL3   J9LWM8   J9LIT0   A0A0R3Q7D3   J9L5U1   A0A0P8Y3A6   A0A2S2NUR1   A0A0Q9WVM4   A0A2P8YPE1   J9KH77   A0A2P8Z3H5   J9KT01   A0A2P8YDX1   A0A023EWM1   J9M185   A0A2P8XR21   A0A1Y1LRT6   X1WT72   A0A0K8TRS6   J9LV02   A0A2M4A3Y0   A0A2M4A3Z2   A0A3S0Z3I7   A0A2P8Z0K7   A0A3L8DEM2   A0A0P8Y4M6   X1X8T7   A0A2P8ZA67  

Pubmed

29403074    25474469    26823975    25527032    20470440    26334808    + More
24330624    24945155    17994087    18057021    28004739    26369729    30249741   

EMBL

HE799691    CCH14900.1    PYGN01000020    PSN57453.1    PYGN01000203    PSN51319.1    + More
PYGN01000070    PSN55417.1    PYGN01000324    PSN48495.1    PYGN01000219    PSN50892.1    PYGN01001004    PSN38555.1    AJVK01001578    PYGN01000107    PSN54137.1    GBBI01004263    JAC14449.1    GBBI01004261    JAC14451.1    GDHC01021627    JAP97001.1    KU311054    ALX81665.1    FJ265555    ADI61823.1    PYGN01000502    PSN45243.1    GBBI01004198    JAC14514.1    GBBI01004199    JAC14513.1    LBMM01005351    KMQ91586.1    GGMR01020071    MBY32690.1    GGFK01005184    MBW38505.1    ABLF02039015    GGFK01001949    MBW35270.1    GGFK01003613    MBW36934.1    GGFK01001798    MBW35119.1    PYGN01003402    PSN29545.1    GECL01001585    JAP04539.1    GGFL01003845    MBW68023.1    GBGD01000331    JAC88558.1    PYGN01001465    PSN34679.1    GGFL01003846    MBW68024.1    GGMR01006433    MBY19052.1    PYGN01000047    PSN56294.1    PYGN01000372    PSN47498.1    GECL01002632    JAP03492.1    GBRD01011073    JAG54751.1    ABLF02019047    ABLF02019049    ABLF02018097    ABLF02043469    ABLF02056908    PYGN01001388    PSN35187.1    ABLF02066124    GBBI01004262    JAC14450.1    PYGN01000613    PSN43351.1    GALA01001775    JAA93077.1    PYGN01000119    PSN53667.1    GAPW01000107    JAC13491.1    CH902621    KPU81727.1    CH902627    KPU74872.1    CH902657    KPU75308.1    CH902628    KPU75346.1    PYGN01000287    PSN49259.1    PYGN01000629    PSN43121.1    GGMR01010991    MBY23610.1    ABLF02027703    ABLF02061609    CH902623    KPU72899.1    CH902618    KPU79125.1    CH902633    KPU74667.1    CH902666    KPU74610.1    CH902622    CH902619    KPU75266.1    KPU77326.1    CH902630    KPU77522.1    CH902626    KPU79149.1    PYGN01001382    PSN35227.1    GAPW01000120    JAC13478.1    ABLF02042851    ABLF02037865    UZAG01001147    VDO10529.1    ABLF02017638    ABLF02041349    CH902714    KPU81861.1    GGMR01008290    MBY20909.1    CH963259    KRF97428.1    PYGN01000451    PSN46127.1    ABLF02018925    PYGN01000212    PSN51056.1    ABLF02003651    ABLF02007294    ABLF02007295    ABLF02056183    PYGN01000672    PSN42460.1    GAPW01000151    JAC13447.1    ABLF02020512    ABLF02020516    ABLF02046511    PYGN01001494    PSN34463.1    GEZM01048836    JAV76363.1    ABLF02020712    ABLF02020717    ABLF02054820    GDAI01000742    JAI16861.1    ABLF02012660    GGFK01002192    MBW35513.1    GGFK01002196    MBW35517.1    RQTK01002506    RUS68506.1    PYGN01000254    PSN50032.1    QOIP01000009    RLU18885.1    KPU76535.1    ABLF02009557    ABLF02016497    ABLF02041313    ABLF02041567    ABLF02062088    PYGN01000129    PSN53384.1   

Proteomes

UP000245037    UP000092462    UP000036403    UP000007819    UP000007801    UP000050602    + More
UP000007798    UP000271974    UP000279307   

PRIDE

D7F170   

Pfam

PF03372   Exo_endo_phos        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF13359   DDE_Tnp_4
PF17919   RT_RNaseH_2
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027806   HARBI1_dom       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A060Q6A2   A0A2P8ZLT6   A0A2P8Z488   A0A2P8ZFZ0   A0A2P8YWA2   A0A2P8Z313   + More
A0A2P8Y2S1   A0A1B0DRK3   A0A2P8ZCA4   A0A023F0H0   A0A023F0F3   A0A146KNZ7   A0A0U4HM41   D7F170   A0A2P8YLY7   A0A023F0M0   A0A023EZ68   A0A0J7KMY2   A0A2S2PT92   A0A2M4ACI4   J9KNQ8   A0A2M4A3H0   A0A2M4A809   A0A2M4A2X8   A0A2P8XC08   A0A0V0G8V1   A0A2M4CRT4   A0A069DWW0   A0A2P8XRQ1   A0A2M4CRR0   A0A2S2NQ16   A0A2P8ZIH1   A0A2P8YTB7   A0A0V0G616   A0A0K8SN56   J9KHI9   J9L6X2   A0A2P8XT58   J9LFP1   A0A023EZ18   A0A2P8YGI5   T1E1T8   A0A2P8ZAY7   A0A023EX67   A0A0P9A604   A0A0P8XJ08   A0A0N8NZU6   A0A0P8Y0P3   A0A2P8YYC9   A0A2P8YFW0   A0A2S2P2F5   J9L287   A0A0P8XDM7   A0A0P9AMX6   A0A0P9BSL5   A0A0P8XIG1   A0A0P9AAF4   A0A0P8Y7V9   A0A0P8ZWR4   A0A2P8XT91   A0A023EWL3   J9LWM8   J9LIT0   A0A0R3Q7D3   J9L5U1   A0A0P8Y3A6   A0A2S2NUR1   A0A0Q9WVM4   A0A2P8YPE1   J9KH77   A0A2P8Z3H5   J9KT01   A0A2P8YDX1   A0A023EWM1   J9M185   A0A2P8XR21   A0A1Y1LRT6   X1WT72   A0A0K8TRS6   J9LV02   A0A2M4A3Y0   A0A2M4A3Z2   A0A3S0Z3I7   A0A2P8Z0K7   A0A3L8DEM2   A0A0P8Y4M6   X1X8T7   A0A2P8ZA67  

KEGG

101739349    no KO assigned | (RefSeq) uncharacterized LOC101739349

GO

GO:0004519   GO:0003964   GO:0006355   GO:0046983  

PANTHER

PTHR23227  

Length:

900

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00587999999999999

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.00024

outside

1  -  900

 

 

Pi

437.346157

Theta

225.260605

Tajima's D

3.041561

CLR

165.114642

CSRT

0.981500924953752

Interpretation

Uncertain