Gene

KWMTBOMO13788

Pre Gene Modal

BGIBMGA011471

Annotation

PREDICTED:_protein_couch_potato_[Papilio_machaon]

Location

Bomo_Chr23(-):9178688-9182163      View in EpiBrowser

Full name

Protein couch potato      

Location in the cell

Nuclear   Reliability : 1.986

CDS

ATGGATGCGAAGCCACGCGAGCTGTATCTACTGTTTCGAGCATATGAGGGCTACGAAGGTTCCCTTCTGAAGGTTACAAGTAAGAACGGGAAGACGGCTTCGCCGGTTGGCTTCGTAACGTTCCACACTCGTGCCGGTGCCGAAGCGGCTAAGCAGGATTTACAGCAGGGCGTCCGGTTCGACCCCGACATGCCGCAAACGATTCGGTTGGAGTTCGCTAAAAGCAACACGAAGGTCAGCAAGCCCAAGCCGGCAGTTGCCACAGCCGCGCCAGCCGCACACCCCGCATTGATGCACCCACTCACTGGACATTTAGCGAGTCCGTTTTTCCCTGGCGGTGGAGCTGAGCTGTGGCACCACCCGCTGGCGTATGGCGGTGAGCTGCCCGGACTCTCGCACGGCCTCGTGCATCCCGCCATCCACCCACAGATGGCGCCCGTGCGTTCCTACCTCTGA

Protein

MDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQQGVRFDPDMPQTIRLEFAKSNTKVSKPKPAVATAAPAAHPALMHPLTGHLASPFFPGGGAELWHHPLAYGGELPGLSHGLVHPAIHPQMAPVRSYL

Description

May play a role in the development or function of the peripheral nervous system by regulating the processing of nervous system-specific transcripts.

Keywords

Alternative splicing   Complete proteome   Developmental protein   Nucleus   Reference proteome   Repeat   RNA-binding  

Feature

chain  Protein couch potato
splice variant  In isoform 2.

Uniprot

A0A212ESR7   A0A2W1BCU7   A0A194RQV0   A0A0N1IN00   A0A2A4JS44   A0A2H1VS13   + More
V9IAT2   A0A1Y1KU68   A0A0C9QEX1   A0A1B6CUQ7   H9JPL6   W8C3H2   A0A2R7WLM3   A0A3B0KBD6   A0A0A1WTP2   F6KSN4   A0A034WDV7   A0A0K8UF63   A0A0L7QNA5   T1PMG4   A0A2A3ELY8   V9I9G9   B0WY46   A0A0K8TM31   A0A1A9VPE3   A0A139WND8   A0A087ZZH7   A0A139WNH4   A0A3L8E5N8   A0A158P123   A0A1B6DWR1   B4JUU1   B4QV28   A0A0R3NK64   E2A5V1   Q01617-6   A0A1J1J118   U5EP95   A0A1J1J574   A0A2R7WMN8   A0A1I8JVI8   A0A1I8JT68   A0A182RIL3   A0A182VZJ7   A0A1B6EB19   A0A1I8MWM2   A0A0Q9WFV4   A0A026VUN2   B4KCE7   A0A2M4A6Q6   A0A1I8QEU9   A0A0M4EM63   A0A2M3YZA3   B4NB66   B4PKJ9   A0A2M4BS68   A0A1Q3FU21   A0A0T6B995   A0A1W4U7H4   A0A1B6HGP7   A0A1B6L6A2   A0A232F5X2   A0A1B6EWC1   A0A2M4BNL8   A0A2M4A3H6   A0A2M4A3R1   A0A2M3ZFQ4   T1E2W3   T1DCY4   A0A2S2PU73   E0VPJ7   A0A069DYB6   B4GLJ4   A0A2M4CR49   A0A0B4KGD8   Q01617   A0A2M4CR81   A0A2M4CSG2   A0A0V0GBH5   B4IBB6   A0A1Q3FX61   A0A0B4KHB6   A0A0B4KGV8   A0A2M3YY15   A0A0K8SMI8   A0A0B4KHP4   A0A0K8T8U7   A0A2H8TFU1   A0A182NRW2   A0A182PSL3   F5HMI6   A0A182MP53   B3P0E7   A0A023EUP3   A0A1B6J8D7   A0A2S2P051   J9JJ34   F5HMI5   A0A336LJQ0   A0A336LL31  

Pubmed

22118469    28756777    26354079    28004739    19121390    24495485    + More
25830018    21315077    25348373    26369729    18362917    19820115    30249741    21347285    17994087    15632085    20798317    1427076    10731132    12537572    12537569    18852464    25315136    24508170    17550304    28648823    24330624    20566863    26334808    12537568    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12364791    14747013    17210077    24945155   

EMBL

AGBW02012729    OWR44527.1    KZ150207    PZC72241.1    KQ459833    KPJ19857.1    + More
KQ459037    KPJ04290.1    NWSH01000777    PCG74293.1    ODYU01004111    SOQ43641.1    JR037410    AEY57757.1    GEZM01073676    GEZM01073675    GEZM01073674    GEZM01073673    JAV64939.1    GBYB01001884    GBYB01001886    JAG71651.1    JAG71653.1    GEDC01020233    GEDC01019186    JAS17065.1    JAS18112.1    BABH01015274    GAMC01010131    JAB96424.1    KK855009    PTY20271.1    OUUW01000007    SPP83429.1    GBXI01011858    JAD02434.1    HQ603004    ADW77182.1    GAKP01005231    GAKP01005229    JAC53721.1    GDHF01027007    GDHF01021518    GDHF01003315    GDHF01001373    JAI25307.1    JAI30796.1    JAI48999.1    JAI50941.1    KQ414855    KOC60110.1    KA649113    AFP63742.1    KZ288212    PBC32813.1    JR037412    AEY57758.1    DS232180    EDS36856.1    GDAI01002181    JAI15422.1    KQ971311    KYB29452.1    KYB29453.1    QOIP01000001    RLU27168.1    ADTU01006086    ADTU01006087    ADTU01006088    ADTU01006089    ADTU01006090    ADTU01006091    ADTU01006092    ADTU01006093    ADTU01006094    ADTU01006095    GEDC01007174    JAS30124.1    CH916374    EDV91261.1    CM000364    EDX12511.1    CM000070    KRT01298.1    GL437061    EFN71193.1    Z14311    Z14312    Z14974    AE014297    AY129455    BT001569    CVRI01000066    CRL06032.1    GANO01003771    JAB56100.1    CRL06033.1    PTY20270.1    APCN01000909    GEDC01002185    JAS35113.1    CH940650    KRF83106.1    KK107921    EZA47206.1    CH933806    EDW13756.2    GGFK01003110    MBW36431.1    CP012526    ALC46502.1    GGFM01000842    MBW21593.1    CH964232    EDW81030.2    CM000160    EDW95838.2    GGFJ01006786    MBW55927.1    GFDL01004122    JAV30923.1    LJIG01009029    KRT83898.1    GECU01033812    GECU01013920    JAS73894.1    JAS93786.1    GEBQ01020781    JAT19196.1    NNAY01000952    OXU25757.1    GECZ01027494    GECZ01018905    GECZ01000725    JAS42275.1    JAS50864.1    JAS69044.1    GGFJ01005538    MBW54679.1    GGFK01001980    MBW35301.1    GGFK01001957    MBW35278.1    GGFM01006537    MBW27288.1    GALA01000920    JAA93932.1    GALA01001647    JAA93205.1    GGMR01020306    MBY32925.1    DS235366    EEB15303.1    GBGD01002515    JAC86374.1    CH479185    EDW38418.1    GGFL01003628    MBW67806.1    AGB96071.1    AGB96072.1    GGFL01003611    MBW67789.1    GGFL01003610    MBW67788.1    GECL01000698    JAP05426.1    CH480827    EDW44674.1    GFDL01002845    JAV32200.1    AGB96070.1    AGB96068.1    GGFM01000399    MBW21150.1    GBRD01011346    GBRD01011345    JAG54478.1    AGB96069.1    GBRD01010256    GBRD01003867    JAG61954.1    GFXV01001140    MBW12945.1    AAAB01008987    EGK97508.1    AXCM01000938    AXCM01000939    CH954181    EDV48662.1    GAPW01001419    JAC12179.1    GECU01012257    JAS95449.1    GGMR01010196    MBY22815.1    ABLF02031731    EGK97506.1    UFQT01000038    SSX18414.1    SSX18415.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000218220    UP000005204    UP000268350    + More
UP000053825    UP000242457    UP000002320    UP000078200    UP000007266    UP000005203    UP000279307    UP000005205    UP000001070    UP000000304    UP000001819    UP000000311    UP000000803    UP000183832    UP000076407    UP000075840    UP000075900    UP000075920    UP000095301    UP000008792    UP000053097    UP000009192    UP000095300    UP000092553    UP000007798    UP000002282    UP000192221    UP000215335    UP000009046    UP000008744    UP000001292    UP000075884    UP000075885    UP000007062    UP000075883    UP000008711    UP000007819   

PRIDE

H9JPL6    Q01617   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR034788   Cpo_RRM       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12684  RRM_cpo

ProteinModelPortal

A0A212ESR7   A0A2W1BCU7   A0A194RQV0   A0A0N1IN00   A0A2A4JS44   A0A2H1VS13   + More
V9IAT2   A0A1Y1KU68   A0A0C9QEX1   A0A1B6CUQ7   H9JPL6   W8C3H2   A0A2R7WLM3   A0A3B0KBD6   A0A0A1WTP2   F6KSN4   A0A034WDV7   A0A0K8UF63   A0A0L7QNA5   T1PMG4   A0A2A3ELY8   V9I9G9   B0WY46   A0A0K8TM31   A0A1A9VPE3   A0A139WND8   A0A087ZZH7   A0A139WNH4   A0A3L8E5N8   A0A158P123   A0A1B6DWR1   B4JUU1   B4QV28   A0A0R3NK64   E2A5V1   Q01617-6   A0A1J1J118   U5EP95   A0A1J1J574   A0A2R7WMN8   A0A1I8JVI8   A0A1I8JT68   A0A182RIL3   A0A182VZJ7   A0A1B6EB19   A0A1I8MWM2   A0A0Q9WFV4   A0A026VUN2   B4KCE7   A0A2M4A6Q6   A0A1I8QEU9   A0A0M4EM63   A0A2M3YZA3   B4NB66   B4PKJ9   A0A2M4BS68   A0A1Q3FU21   A0A0T6B995   A0A1W4U7H4   A0A1B6HGP7   A0A1B6L6A2   A0A232F5X2   A0A1B6EWC1   A0A2M4BNL8   A0A2M4A3H6   A0A2M4A3R1   A0A2M3ZFQ4   T1E2W3   T1DCY4   A0A2S2PU73   E0VPJ7   A0A069DYB6   B4GLJ4   A0A2M4CR49   A0A0B4KGD8   Q01617   A0A2M4CR81   A0A2M4CSG2   A0A0V0GBH5   B4IBB6   A0A1Q3FX61   A0A0B4KHB6   A0A0B4KGV8   A0A2M3YY15   A0A0K8SMI8   A0A0B4KHP4   A0A0K8T8U7   A0A2H8TFU1   A0A182NRW2   A0A182PSL3   F5HMI6   A0A182MP53   B3P0E7   A0A023EUP3   A0A1B6J8D7   A0A2S2P051   J9JJ34   F5HMI5   A0A336LJQ0   A0A336LL31  

PDB

5TKZ     E-value=3.25674e-23,     Score=262

KEGG

101746874    no KO assigned | (RefSeq) protein couch potato

GO

GO:0003723   GO:0003676   GO:0003729   GO:0005634   GO:0007275   GO:0022611   GO:0007268   GO:0035206   GO:0000166   GO:0006468   GO:0005524   GO:0004714   GO:0007169   GO:0016020   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

151

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01364

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.11904

outside

1  -  151

 

 

Pi

258.981463

Theta

212.478523

Tajima's D

0.975927

CLR

0.059732

CSRT

0.654867256637168

Interpretation

Uncertain