Gene

KWMTBOMO13773

Annotation

PREDICTED:_Hermansky-Pudlak_syndrome_1_protein_homolog_[Bombyx_mori]

Location

Bomo_Chr23(-):8877433-8883662      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.147 Extracellular   Reliability : 1.271 PlasmaMembrane   Reliability : 1.102

CDS

ATGAAAGCTTTATTAATTTTCGATAGTGTTAATGACCTGGTTTTTTCAAAATGGGACGACTCTTTCATAAGGCACCTGAGAAATTTTAGTGTACAGGACTTTGAAGAAAATTTAAGTGACAGTGTAAATGTGTCTCAGATATTTACACCCATTATACTATCGCAGAGGGTTATGGCGGCACAATTTGGTAACACATACTCCTCCATGCAGTGTAAAGATGGTACAACAATATTTTTTGATGAGTGGTTAGATCATGTTTTTATTATAATATGTGAGGATTGTTTGGATGATGCACATAGAGAACTACTCGATTGCAAAACTCTTGTACAACACATTTGTGGGCAAAACATAAACCTCTTGCACTCACCAATCTACCAGGACTGGCTTTCGGTACTACTGGACTGCCGAACTAAAGGAGACTCAATCCCTGGAGCGAATGGAGTGATCGGTGAGAGCGGTGCAACATCTGCCGCTCTGAATGCACTCAAAACTTCATCTAAAGATTTCAAAATTTCCTATTCACATTATCATTTATTGCTGTTCGTTGGAGACAAATTGCTATCGCTGTACTCTAGCCGTAGTAGTGATGATCTGTCTCCTCCAGATTTAATCCTGTTAAGTATACAATGTATAGCGGCTCAAGAACATTGGAAAGACGCTAAACTTGAAGATAATGAACATTTTGTGAAGCTACCGTGGTTGTCAAAAGAGAATAGTGCAATAATAAATTTGTGTGCTGGTCCAATGGGTACCCCATGTGCCCCGCACTCCATGCACCTCGCGGAGGTCGCTCCCCGTATCACTTTTGCAGTTGTCGCTGATATGGACCTCAGGGAAGTGGGCATTGCAGCTAATTTGTCATGTCAGATACTCTCGAATCTAAGGAGAATTTTATTGCAAAGGAATCTGGAATTACTGCCTTCTACGCTTGATAATTTAGAAGTGGCCCTGAAAAAGACTACAGATTCTTTGCGTAAAAATAAGGCTAATGCTAGTCTATGCGCTCGTTTGACAAGTCGCATGCTAGAGTTGCGCAAGTCCTGCACGACCACGACCCCGTTGACGCCGGAAACCACTGCGACGGCCATGCACACTGCCTTGGAAGCTGTCATCGAGCAACTCAAACCGGATATACCGAGTCTCAAGTTAGGGCAGGCATTGAAACATCTTAAGAATCTTCTGGCGCCGTACGTTGAATTCCTTCGTGTGAAAGCGATGAGATTCTTCAGTTTGGGATCATATCCTTTTCAATAA

Protein

MKALLIFDSVNDLVFSKWDDSFIRHLRNFSVQDFEENLSDSVNVSQIFTPIILSQRVMAAQFGNTYSSMQCKDGTTIFFDEWLDHVFIIICEDCLDDAHRELLDCKTLVQHICGQNINLLHSPIYQDWLSVLLDCRTKGDSIPGANGVIGESGATSAALNALKTSSKDFKISYSHYHLLLFVGDKLLSLYSSRSSDDLSPPDLILLSIQCIAAQEHWKDAKLEDNEHFVKLPWLSKENSAIINLCAGPMGTPCAPHSMHLAEVAPRITFAVVADMDLREVGIAANLSCQILSNLRRILLQRNLELLPSTLDNLEVALKKTTDSLRKNKANASLCARLTSRMLELRKSCTTTTPLTPETTATAMHTALEAVIEQLKPDIPSLKLGQALKHLKNLLAPYVEFLRVKAMRFFSLGSYPFQ

Uniprot

A0A2H1VTY6   A0A0N0PA96   A0A2A4JQR1   A0A1E1WTT4   A0A194RRA5   A0A3S2N9P9   + More
A0A212FE43   A0A2W1BGB5   A0A0L7LL05   D6WAY1   A0A1Y1JYP9   A0A1Y1JVM4   A0A1Y1JYQ2   A0A3L8DPX6   A0A0V0GDC6   A0A154PKQ3   A0A023F1I4   A0A1Q3G135   A0A0J7KHP7   K7INS4   A0A182G336   A0A2J7RH88   A0A084W3J6   B0XEH2   Q16KT0   A0A1S4FXE5   A0A195BMV7   A0A2M4CSJ7   A0A182PI86   A0A182K1A7   A0A182V4S6   A0A182JCW7   A0A182LHN0   A0A336LSK3   A0A1Y9GK72   A7US34   A0A182YEB3   A0A182FVI9   A0A182Q7R1   A0A182MRJ2   A0A182TRM5   A0A1B0BJL7   A0A0K8WJE6   A0A0K8VG32   A0A182MXI0   A0A034V9X0   A0A1I8Q2I4   A0A182WDD6   A0A182X5H3   A0A0L0C8R6  

Pubmed

26354079    22118469    28756777    26227816    18362917    19820115    + More
28004739    30249741    25474469    20075255    26483478    24438588    17510324    20966253    12364791    25244985    25348373    26108605   

EMBL

ODYU01004426    SOQ44283.1    KQ459037    KPJ04274.1    NWSH01000798    PCG74149.1    + More
GDQN01000644    JAT90410.1    KQ459833    KPJ19840.1    RSAL01000399    RVE41939.1    AGBW02008970    OWR52029.1    KZ150160    PZC72724.1    JTDY01000716    KOB76110.1    KQ971312    EEZ98699.2    GEZM01099381    GEZM01099379    GEZM01099377    JAV53358.1    GEZM01099380    JAV53359.1    GEZM01099378    JAV53361.1    QOIP01000005    RLU22457.1    GECL01000802    JAP05322.1    KQ434948    KZC12432.1    GBBI01003858    JAC14854.1    GFDL01001543    JAV33502.1    LBMM01007402    KMQ89759.1    JXUM01140646    JXUM01140647    KQ569098    KXJ68761.1    NEVH01003746    PNF40202.1    ATLV01020055    KE525293    KFB44790.1    DS232831    EDS25969.1    CH477938    EAT34929.1    KQ976433    KYM87323.1    GGFL01004122    MBW68300.1    UFQT01000095    SSX19693.1    APCN01005439    AAAB01008816    EDO64467.1    AXCN02001713    AXCM01008841    JXJN01015446    GDHF01001120    JAI51194.1    GDHF01014430    JAI37884.1    GAKP01020382    JAC38570.1    JRES01000755    KNC28627.1   

Proteomes

UP000053268    UP000218220    UP000053240    UP000283053    UP000007151    UP000037510    + More
UP000007266    UP000279307    UP000076502    UP000036403    UP000002358    UP000069940    UP000249989    UP000235965    UP000030765    UP000002320    UP000008820    UP000078540    UP000075885    UP000075881    UP000075903    UP000075880    UP000075882    UP000075840    UP000007062    UP000076408    UP000069272    UP000075886    UP000075883    UP000075902    UP000092460    UP000075884    UP000095300    UP000075920    UP000076407    UP000037069   

Pfam

PF15985   KH_6        + More
PF14382   ECR1_N

Interpro

IPR026053   HPS1        + More
IPR025721   Exosome_cplx_N_dom       
IPR022967   S1_dom       
IPR004088   KH_dom_type_1       
IPR012340   NA-bd_OB-fold       
IPR036612   KH_dom_type_1_sf       
IPR003029   S1_domain       

SUPFAM

SSF54791   SSF54791        + More
SSF50249   SSF50249       

ProteinModelPortal

A0A2H1VTY6   A0A0N0PA96   A0A2A4JQR1   A0A1E1WTT4   A0A194RRA5   A0A3S2N9P9   + More
A0A212FE43   A0A2W1BGB5   A0A0L7LL05   D6WAY1   A0A1Y1JYP9   A0A1Y1JVM4   A0A1Y1JYQ2   A0A3L8DPX6   A0A0V0GDC6   A0A154PKQ3   A0A023F1I4   A0A1Q3G135   A0A0J7KHP7   K7INS4   A0A182G336   A0A2J7RH88   A0A084W3J6   B0XEH2   Q16KT0   A0A1S4FXE5   A0A195BMV7   A0A2M4CSJ7   A0A182PI86   A0A182K1A7   A0A182V4S6   A0A182JCW7   A0A182LHN0   A0A336LSK3   A0A1Y9GK72   A7US34   A0A182YEB3   A0A182FVI9   A0A182Q7R1   A0A182MRJ2   A0A182TRM5   A0A1B0BJL7   A0A0K8WJE6   A0A0K8VG32   A0A182MXI0   A0A034V9X0   A0A1I8Q2I4   A0A182WDD6   A0A182X5H3   A0A0L0C8R6  

KEGG

101746313    K20193 Hermansky-Pudlak syndrome 1 protein | (RefSeq) Hermansky-Pudlak syndrome 1 protein homolog

GO

GO:0016021   GO:0003723  

PANTHER

PTHR12761  

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00349000000000001

Exp number, first 60 AAs:

0.00068

Total prob of N-in:

0.00178

outside

1  -  417

 

 

Pi

163.634654

Theta

181.965606

Tajima's D

-0.809712

CLR

271.464396

CSRT

0.178891055447228

Interpretation

Uncertain