Gene

KWMTBOMO13772

Pre Gene Modal

BGIBMGA011478

Annotation

PREDICTED:_Hermansky-Pudlak_syndrome_1_protein_homolog_[Amyelois_transitella]

Location

Bomo_Chr23(-):8874491-8875312      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.635 Nuclear   Reliability : 1.168

CDS

ATGCAGATAAAGAGCACGGTGCGGCGAGCGCTGAGCGTGCTGCGCGAGGGGTACAGCGGGGCGACGTGGCGGCGCGGCGCGTTCCACGTGTGCGCGGTGCGGTGGTGGCAGCGCGGCGCCGCGCCCTGCCGCCCCGCGCGCCCCCCGCCGCCCGCCGCCCTGCGCGCGCTGCCGCCGCCCGGGGACATCCTCGCCTCGTTCTACAGGCAATTGCTCGAGCAGTCATTTCCAAACGACAGCCAGGGAGTGAACATCAAGGAGTTGATATGCGTCCACTTGGGCCTGTTGCCGGCTTCGACGGCCGTGCAGCAGGCGCGCCGCCTCGCGCACTCCGTACACGAACTCGCCAGCGACATCCCCGCCATCGCCGCAGACCTACTCTGA

Protein

MQIKSTVRRALSVLREGYSGATWRRGAFHVCAVRWWQRGAAPCRPARPPPPAALRALPPPGDILASFYRQLLEQSFPNDSQGVNIKELICVHLGLLPASTAVQQARRLAHSVHELASDIPAIAADLL

Uniprot

A0A3S2N9P9   A0A194RUM4   A0A0N0PA96   A0A212FE43   A0A0L7LKZ6   E0VH59   + More
A0A2A3EG60   A0A2J7RH89   A0A3R7PTJ2   A0A2J7RH88   A0A067R1G5   A0A0L7QPW2   A0A154PKQ3   K7INS4   A0A232FCZ0   A0A1B6KVR4   A0A226ERW5   A0A1B6LXC4   A0A1B6D2N5   A0A0M9AAT9   A0A1B6HX39   A0A034VAH9   B4MY78   A0A0A1X2D0   A0A1Y1JVM4   A0A1Y1JYQ2   A0A023F1I4   A0A0V0GDC6   B3MC75   E9J727   E2C4M1   A0A151WEZ8   A0A224XGS9   A0A1W4UHQ5   E2AB18   A0A158NZG2   A0A2P2I9I4   J9K8N1   A0A2S2PYT2   A0A2S2NX13   B3NQR4   A0A3Q1H0U6   A0A0A9VYF7   A0A146LGN4   A0A1A8EPC4   B4P7Q4   A0A3B4TYC0   A0A3B4Y9N4   Q7K3N1   F6WUZ3   A0A0J9U278   B4QGA6   A0A1A8MXC4   D6WAY1   A0A2M4APH8   A0A1B6DMF9   B4JW80   B4HRQ7   A0A0T6AWE7   A0A2M4CKP2   A0A0S7KZE1   A0A3Q0T2W6   G3NXA1   A0A3B0JM72   A0A3Q2YNM6   A0A3P9LQ36   H2LUH3   A0A3P9J2I7   A0A2U9CE79   A0A3Q3WAG5   A0A3P9Q6E3   T1DGI6   A0A3Q3GGA4   A0A3Q0JDU0   L5MBM0   S7NPJ2   A0A096MD29   A0A1D2MVD0   B0XEH2   A0A1A8CQ28   A0A336LSK3   A0A1A7WLY1   A0A1A7ZFG4   A0A1A8NJ24   A0A0L0C8R6  

Pubmed

26354079    22118469    26227816    20566863    24845553    20075255    + More
28648823    25348373    17994087    25830018    28004739    25474469    21282665    20798317    21347285    25401762    26823975    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    19892987    22936249    18362917    19820115    17554307    27289101    26108605   

EMBL

RSAL01000399    RVE41939.1    KQ459833    KPJ19841.1    KQ459037    KPJ04274.1    + More
AGBW02008970    OWR52029.1    JTDY01000716    KOB76112.1    DS235161    EEB12715.1    KZ288266    PBC30282.1    NEVH01003746    PNF40203.1    QCYY01000856    ROT82225.1    PNF40202.1    KK853097    KDR11428.1    KQ414799    KOC60670.1    KQ434948    KZC12432.1    NNAY01000445    OXU28328.1    GEBQ01024643    JAT15334.1    LNIX01000002    OXA60249.1    GEBQ01011650    JAT28327.1    GEDC01017425    JAS19873.1    KQ435698    KOX80690.1    GECU01028480    JAS79226.1    GAKP01020384    JAC38568.1    CH963894    EDW77067.1    GBXI01009392    JAD04900.1    GEZM01099380    JAV53359.1    GEZM01099378    JAV53361.1    GBBI01003858    JAC14854.1    GECL01000802    JAP05322.1    CH902619    EDV36175.1    GL768421    EFZ11344.1    GL452536    EFN77101.1    KQ983238    KYQ46387.1    GFTR01006192    JAW10234.1    GL438234    EFN69294.1    ADTU01004592    IACF01005082    LAB70669.1    ABLF02037943    GGMS01001484    MBY70687.1    GGMR01008889    MBY21508.1    CH954179    EDV55974.1    GBHO01042367    JAG01237.1    GDHC01012483    JAQ06146.1    HAEB01002195    SBQ48722.1    CM000158    EDW91080.1    AE013599    AY058469    AAF58194.1    AAL13698.1    CM002911    KMY93855.1    CM000362    EDX07144.1    HAEF01020118    SBR61277.1    KQ971312    EEZ98699.2    GGFK01009352    MBW42673.1    GEDC01010402    JAS26896.1    CH916375    EDV98218.1    CH480816    EDW47921.1    LJIG01022706    KRT79134.1    GGFL01001706    MBW65884.1    GBYX01191545    JAO82662.1    OUUW01000001    SPP74376.1    CP026257    AWP14009.1    GAMD01002761    JAA98829.1    KB102330    ELK35670.1    KE164716    EPQ19694.1    AYCK01014814    LJIJ01000476    ODM97047.1    DS232831    EDS25969.1    HADZ01017936    SBP81877.1    UFQT01000095    SSX19693.1    HADW01005129    SBP06529.1    HADY01002904    SBP41389.1    HAEH01002487    HAEI01014043    SBR69023.1    JRES01000755    KNC28627.1   

Proteomes

UP000283053    UP000053240    UP000053268    UP000007151    UP000037510    UP000009046    + More
UP000242457    UP000235965    UP000283509    UP000027135    UP000053825    UP000076502    UP000002358    UP000215335    UP000198287    UP000053105    UP000007798    UP000007801    UP000008237    UP000075809    UP000192221    UP000000311    UP000005205    UP000007819    UP000008711    UP000265040    UP000002282    UP000261420    UP000261360    UP000000803    UP000002281    UP000000304    UP000007266    UP000001070    UP000001292    UP000261340    UP000007635    UP000268350    UP000264820    UP000265180    UP000001038    UP000265200    UP000246464    UP000261620    UP000242638    UP000261660    UP000079169    UP000028760    UP000094527    UP000002320    UP000037069   

Interpro

IPR026053   HPS1       

ProteinModelPortal

A0A3S2N9P9   A0A194RUM4   A0A0N0PA96   A0A212FE43   A0A0L7LKZ6   E0VH59   + More
A0A2A3EG60   A0A2J7RH89   A0A3R7PTJ2   A0A2J7RH88   A0A067R1G5   A0A0L7QPW2   A0A154PKQ3   K7INS4   A0A232FCZ0   A0A1B6KVR4   A0A226ERW5   A0A1B6LXC4   A0A1B6D2N5   A0A0M9AAT9   A0A1B6HX39   A0A034VAH9   B4MY78   A0A0A1X2D0   A0A1Y1JVM4   A0A1Y1JYQ2   A0A023F1I4   A0A0V0GDC6   B3MC75   E9J727   E2C4M1   A0A151WEZ8   A0A224XGS9   A0A1W4UHQ5   E2AB18   A0A158NZG2   A0A2P2I9I4   J9K8N1   A0A2S2PYT2   A0A2S2NX13   B3NQR4   A0A3Q1H0U6   A0A0A9VYF7   A0A146LGN4   A0A1A8EPC4   B4P7Q4   A0A3B4TYC0   A0A3B4Y9N4   Q7K3N1   F6WUZ3   A0A0J9U278   B4QGA6   A0A1A8MXC4   D6WAY1   A0A2M4APH8   A0A1B6DMF9   B4JW80   B4HRQ7   A0A0T6AWE7   A0A2M4CKP2   A0A0S7KZE1   A0A3Q0T2W6   G3NXA1   A0A3B0JM72   A0A3Q2YNM6   A0A3P9LQ36   H2LUH3   A0A3P9J2I7   A0A2U9CE79   A0A3Q3WAG5   A0A3P9Q6E3   T1DGI6   A0A3Q3GGA4   A0A3Q0JDU0   L5MBM0   S7NPJ2   A0A096MD29   A0A1D2MVD0   B0XEH2   A0A1A8CQ28   A0A336LSK3   A0A1A7WLY1   A0A1A7ZFG4   A0A1A8NJ24   A0A0L0C8R6  

KEGG

101746313    K20193 Hermansky-Pudlak syndrome 1 protein | (RefSeq) Hermansky-Pudlak syndrome 1 protein homolog

GO

GO:0060967   GO:0031085   GO:0016021  

PANTHER

PTHR12761  

Length:

127

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0258

Exp number, first 60 AAs:

0.00142

Total prob of N-in:

0.62012

inside

1  -  127

 

 

Pi

73.340825

Theta

110.211974

Tajima's D

-0.522516

CLR

50.311838

CSRT

0.239838008099595

Interpretation

Uncertain