Silkworm Genome Informatics Database

Gene

KWMTBOMO13768 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011480

Annotation

PREDICTED:_ribonuclease_H2_subunit_A-like_[Plutella_xylostella]

Location

Bomo_Chr23(-):8809089-8816642 View in EpiBrowser

Full name

Ribonuclease

Location in the cell

Nuclear Reliability : 1.525

CDS

ATGAACTCACTACAAGAATTACAGGCAATTATTAAATCCAAAGATAATTTCACTAAATTTGTCATAAATTCTGAAGTACCGGCTGTCTGCAAAAATGAACCTTGCATGCTCGGAGTGGATGAAGCAGGCCGTGGTCCTGTGCTCGGACCTATGGTGTATGGAGTATCCTACTGCCCTCTAAATCGAAAGAGTATTTTGGAGGAATTGGGCTGTGCTGACTCTAAAGCTCTTACGGAAGCTAAAAGGGATGAAATATTCACAAAGATGTTGACTGAGGAAGACAGCCTCAATAATGTTGGCTGGGCTGTTGAAGTCATATCACCTAATTACATTTCCAATTCAATGTACAGACGAGCCAAATGTTCATTAAATGAAGTGTCAATGAATTCTGCAATAGATTTAATTAAGAAAGCTGCAGAAAGTGGTGTCAATATTACAGAAGTTTATGTGGACACAGTGGGGCCTCCAGAGAAATATCAAACAAAATTATCTGAAATATTTCCTTCTTACAAAATAACTGTGGCGAAAAAGGCCGACTCCATCTATCCCATAGTATCAGCAGCAAGTATTGTGGCTAAAGTAACCAGAGATCATGCACTAAAAGTATGGCATTTTAATGAGGGACTACAATTGGATCACACAGAATTTGGCAGTGGATATCCGGGAGATCCATTAACAAAGAAATTCATACGCGATCGAATCGATAACGTTTTTGGATATCCGCTTTTGGTACGGTTCAGCTGGTCGACAGCAGAACTCATGCTGCAAGAGAAAGCGGCAGCGTGCACGTTTGAAGACGTAGACGACCCTGGCAAAGGAAAAATCGCGATCGATGGCGATAACTTCCTTCGGGCGGTAGCTAAATTTACAATCGGCAAAATGTTGTTTCGGTATTGTGCTGCTTTACTGGCGCTCGCCGTTTGCGCCTCCGCGATAGTAGCCCCGAATAACGTTACCAAGACTGATACGCTGAAAGCAGATTCATATTTGGCCGCCTATTCAAAATCACGGATAGAAGCAGAAAAGGCAAAACAAGGCGTTATCATAGTGACCGCGAAAGACGGCGAAAAGAAAATATCGAATCGTGACGACAGTTCGTCTGGATATGATTATTCTCCACCGAGCGACAGTTTCAGTTCATCAGGATCGTCAAGTTTCTCCGGACCATCCAGTTACTCGCCATCTCCGAGTTACGGAACGCCAGTAAAATTCGAACCTGAAATTACCTATGACACTCCCCCTAATACTTATGGCCCTCCGTCCCCTAATTATGGTCCACCAAGCCATTCGTATGGACCTCCGGCACAAACATATGGCCCGCCGGCTCAGACATACGGACCACCGACTCAGTCGTATGGGCCACCGATTTACAAACCCATACTCCCAGTCTACGGACCGCCCCCGAAACCATCTTACGGTGTACCGTATGGCATGGCCGGTTTTAATTTCTTCGACAAACTGTCTTTGAAATTAGACATCCTAACGATTGCAAAGGTGCTCCTCAAATTTCTAATATTCAAGAAGATAGTGACAATGCTGGCTGTAGTTTGTATGTTGCTTGTGATACCAAAGCTAATCAATTTCAAAAAAGACGACGCTGTTAATAAGGATGAAGAGGACCGGAGCTATGGAGCTAGAAACGTGGTGCAGTTAACATCAGCGCAGCAGTTGTTGGAACGCGCAATCCTTGTCTACGGAAGGCAGGAACCTTCGTGTGGCGTTATTTGTCGAATGCGCAGAGTCGTCGACGACATTTACGAATTCCAACCTTATACTAGAAGTAACAATGTTGGCTCGTTGTTGTCATTATAA

Protein

MNSLQELQAIIKSKDNFTKFVINSEVPAVCKNEPCMLGVDEAGRGPVLGPMVYGVSYCPLNRKSILEELGCADSKALTEAKRDEIFTKMLTEEDSLNNVGWAVEVISPNYISNSMYRRAKCSLNEVSMNSAIDLIKKAAESGVNITEVYVDTVGPPEKYQTKLSEIFPSYKITVAKKADSIYPIVSAASIVAKVTRDHALKVWHFNEGLQLDHTEFGSGYPGDPLTKKFIRDRIDNVFGYPLLVRFSWSTAELMLQEKAAACTFEDVDDPGKGKIAIDGDNFLRAVAKFTIGKMLFRYCAALLALAVCASAIVAPNNVTKTDTLKADSYLAAYSKSRIEAEKAKQGVIIVTAKDGEKKISNRDDSSSGYDYSPPSDSFSSSGSSSFSGPSSYSPSPSYGTPVKFEPEITYDTPPNTYGPPSPNYGPPSHSYGPPAQTYGPPAQTYGPPTQSYGPPIYKPILPVYGPPPKPSYGVPYGMAGFNFFDKLSLKLDILTIAKVLLKFLIFKKIVTMLAVVCMLLVIPKLINFKKDDAVNKDEEDRSYGARNVVQLTSAQQLLERAILVYGRQEPSCGVICRMRRVVDDIYEFQPYTRSNNVGSLLSL

Description

Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.

Catalytic Activity

Endonucleolytic cleavage to 5'-phosphomonoester.

Similarity

Belongs to the RNase HII family.

Uniprot

H9JPM5 A0A2H1V6R2

EC Number

3.1.26.4

Pubmed

19121390

EMBL

BABH01015246 ODYU01000972 SOQ36533.1

Proteomes

UP000005204

PRIDE

H9JPM5

Pfam

PF01351 RNase_HII

Interpro

IPR036397   RNaseH_sf        + More
IPR023160   RNase_HII_hlx-loop-hlx_cap_dom
IPR001352   RNase_HII/HIII
IPR024567   RNase_HII/HIII_dom
IPR012337   RNaseH-like_sf
IPR004649   RNase_H2_suA

SUPFAM

SSF53098 SSF53098

Gene 3D

1.10.10.460 3.30.420.10

ProteinModelPortal

H9JPM5 A0A2H1V6R2

PDB

3P5J E-value=2.93069e-75, Score=719

KEGG

101745588 no KO assigned | (RefSeq) uncharacterized LOC101745588

GO

GO:0004523 GO:0016021 GO:0003723 GO:0003676 GO:0016070 GO:0016620 GO:0005216 GO:0006811 GO:0016787 GO:0016491 GO:0015930

PANTHER

PTHR10954

Length:

603

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

36.53703

Exp number, first 60 AAs:

0.00162

Total prob of N-in:

0.08269

outside

1 - 508

TMhelix

509 - 528

inside

529 - 603

Pi

164.022316

Theta

174.217825

Tajima's D

-0.888147

CLR

4.469949

CSRT

0.155442227888606

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics