SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13761
Pre Gene Modal
BGIBMGA011484
Annotation
PREDICTED:_glutamate_receptor_ionotropic?_kainate_2-like_[Bombyx_mori]
Location
Bomo_Chr23(-):8661616-8683242      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 3.791
 

Sequence

CDS
ATGGTCCAGAAAAGCAGTACGGGATTCTATCACGGAAGATCTTTAGAATCCAGTGTAATTGATAGCTATTCGATATCTTTGGAAATGTGCCCGTTTACTTCTGATAATCATGGTATAGCAGCATTAATAGACGCGCGGCCTACTGATGGCATCTGTGATACAATCTGCTTACTATGCAACAGATATAATGTATCTCATTTATCAATAGGCTGGGAAACCACCGAAACCTTGCCCACAGATTTGTTTACATTCCAATATCATCCACCTCCGGATTTGATATCTAAGGCGTACATAGAGCTGATAAAGTTTTTGCAGTGGGATAAGTTTACTATTCTCTATGAAAGCGAAAAAAGCTTTAAATATCTTGAAGAGATAATCAATAATTGGGGCAACCCCAATGAACCGATTTTGTTCAGAAAATTAGATCCTGAAGGAGATAACAGAGAAGCATTTAAAGAACTCATCAAGAGTTTCATCTTGACAAGTCTAAATGCATATAGTTTAAATTTTCATGAAATACCGGCTCTCATGGCAAATGTATCAACTCTGCATCTGACAACACACATTAATGATGTCAAGTGGAAAGATTTAGGCATTAATACGGATAATGAACCAATTCAGTTGGAAACTGCGCTAGTAGCTGACGCTATAAATCACGTCGGAAAAGCCATAAGAGGGATGATGGGTGATTCTAGAAGCTTTAATTTTATGAACATTCCGCCTCCTCCAGAGCTGTGTGTTAGAGGCTCTAAAACTGATTACGAAGAGGTTGCATGGCCATTGGGAAACGAGTTACGGGCTGCATTAACTCAGACTACAATCAAAGGTTTTACAGGCTTCATAGATTTCGATGAATTTGGTAAACGAAAAAATTTTCATTTGCATTTTTCGAAATTGGATGGAAACAGTCGTTTTGTATCTGCTGGCTCTTGGGATTCCAGAACCAACATAATAACGACAGAGCGGATTGTGAATGATCGTTCAAAAGTACTGAAACCTAACTCTAAAATAAGGATTGCGACTAAAAAGGATCTTCCGTATTTTGAAATAGTGGAAAACTCAAATGGAACTTTTTATAGAGGATTCGTTGTTGATCTTATCGAAGCAATATTTAAACAAATTAAGAACGAAACGAATATAGAACTAGAATATGAATTTTATAAAGTGGCTGATAATAAACTTGGAAATCCCATCCCTGAAAGTAAGAAGTGGGACGGTATAATAGGAGACCTCATTGAGCATAAAGCAGAGCTCGGTGTTGCCGATTTAACTGTAACTGCGGAAAGACTCGCAGCTGTGGATTTTTCGACGCCATTCATGGTTTTGGGCGTAAGCATGTTGTTTAAGCAAACAGAACCACCTCCGCCAGATATGTTTTCTTTTATGAAACCGTTGTCGTTGGACGTTTGGCTTTATCTGGCAACTACTTTTATAGTTATTTCGTTTATCTTGCTTATTTGTGCAAGAATGAGCCTAGACGACTGGGTGAATCCACATCCGTGTAATTTGGAACCTGAAAACCTTCAAAATATATGGAGTTTATATAACTGTATGTGGCTAAATGTGGGTGCCATAATGACACAAGGTTGCGATATATTACCACGAGGACCGGGCTCTCGATGGGTGGTTGGAATGTGGTGGTTTTTCTCTATGATCGTGACAGCTTCGTATATGGCGAACATGTCAACTTTCATGAGGAACAATCGACGTAATAACGACATCGAAGATGTAAAAGCCCTCTCTGAACAAACAAAGGTTTCATATGGAGCCGTGCAGAATTCAGCCACCTACAAGCTTTTCAAAAATTCGAATGACACTATTTATAAGAAGATTTCGATGGTCATGGACACGTCCAGACCATCGGTATTTACGCTTTCCAATGAGGATGGAGTGAACCGTGTGCTTAAAGGAAAAGGGAAATATGCATTCTTCATGGAATCTTCAGCTATCGACTATTATACAAAAAGACACTGCAATTTGAAAATGGTTGGCCCTAAATTGGATTCGAAAGAATACGGAATAGCTATGCCAAAAAATTTTCCTCGGCGAAGTTTAATAGACCACGCGATATTGTCTCTGCAACAAATAGGGGAATTAACAAGATTGAAGACGAAATGGTGGGAAATTGAAGACAACGTGGCACATTGCGAGAATATTAAATCTGACGGCGAACAAGACATTGGTTCTTTACAAATGGCAAATACGAGTGGCATTTTCTTAGTACTTGGCGTCGGAGGAATACTAGGTCTCTTTGTGGCCATTATTGAGTTTTTACTATATATAAAAAAAATGAGTGCTAAAGATGGGGTGACCTTCTACGAAGCCCTAATTAGGGAGTGGCGTGTTTCCCTGAATCCCAGGGAGCTTCACAAACAAGCGGCGCCGCCAGGATCAGCGATTCCTGCCTCCACCACACCTCATACAACAATGCCGTTAATAAAACATCGAATAATAGTTATATCGTTTGCGCTGCTTTTTGCGTCTGCTGATGCACTTCGTAGTGCTTCTTTTCCCATAGGAGGTTTGTTTAACGAACAAACGCTGCCCAGTTCATCGGAGATTTTTAAAAATAAGGTAGAGAAAATCGGCTCCACAGCTTACCACGGAAGATCTTTGGAATCCAGTGTAGTAGATAGTTATTCAATATCTTTGGAGTTGTGTCCGTACACTTCAGATAATCATGGAATTGTAGCATTGATAGACGCGAGGCCTACTGATGGGATCTGTGATATTACCTGTCTCCTATGCAATAGACATAACGTGACTCATATTTCAATAGGATGGGAACCTATAGATACCTTAGCTACGGATTTATTTACATTTCAATATCATCCACACCCCAACATGATTTCTAAAGCGTATGTCGCTCTTATAAAGTTGTTGCAGTGGGATAAATTCACGATACTTTACGAGGATGAAGGCAGCTTTATCCGTTTAGAAGAAATAATAAACACTTGGGATAATATTCGCGAACCCATCTTGTTCAGGAAATTGGATCCCAAAGGAGATAACAGAGAAACTTTCAAAGAACTGCTTAAAGTGGCACATATGAACTATCATATATTGGATTGTCATTTTAACAACATACACAAATATATGTCTGAGATTACTCAAGTCGAGAATTCAACGGAATATCAGAGTTTTATCTTGACAAATCTAGATGCATATACGTTAGATTTTGAAGGAATGCCGGCTCTTATGGCAAATGTATCTACTTTACATCTAACGACACATATTGATGATGTAAAGTGGCAGGATTTTGGAATTAAAACTGACGACGAAGCAATTCAGTTGGAAACAGCGTTAGTTGCAGACGCTTTGAACCATGTCGAGAAAGCTATGAGAGTAATGATGGATAAGCCCGGCAATGTATTGAAGCTATCGCATATACCTTCTCCTCCAGAACTGTGTGCTAGAACTTCGAAAGCTAAATATGAAGAGTTTGCATGGCCTTGGGGAAAACAGCTGCGGGAGGCTTTGATTCAGACTACATTCAAAGGTTTTACTGGCTTTATAGAGCTTGACGAAGAAGGCAAACGAAAAAATGTTGTCTTACATTATTCGAAGTTGGGTAAAGACAGTCGATTTAAGTTGGCAGGCACGTGGGAATCTAGAACAAACATAATTAAGACAGAGCGGATTGTAAATGATCGTTCAACAGCCACCAAGCCAAACTCCAAAATAAGAATAGCAACTAAAAAAGATCTCCCATATTTCGATGTAGTGGAAAACGATAATGGGACGTTTTACAGAGGATTCGTTGTAGATCTTATCGAAGCTATATTTAATCAAATTAAAAACGAAACTAACATTGAATTAGAATATGAATTCTATAGAGTTGCTGGTGACAAACTTGGAAATCCCATCCCAAAGACTAAGAAATGGGACGGTATTTTAGGAGACCTAATTGACCATAAAGCAGAGCTCGGTGTTGCTGATATAACTATAACTGCGGAAAGACTCACAGCTGTAGATTTTTCGACACCATTCATGGTTTTGGGCATAAGCATGCTATTCAAAAAACCAGTACAGCCACCACCAGACAAGTTTTCTTTTATGAATCCATTGTCGTTGGACGTCTGGTTGTATTTAGCAACTACTTATATAATAGTGTCATATATCTTGTTGATTTGTGCGAGAATGAGCCAGGAAGACTGGGTCAATCCACATCCATGTAATATGGAACCTGAAAATCTTCAGAATATATGGGATTTGTATAATTGCATGTGGTTAACTATGGGCGCTATAATGACACAAGGCTGCGATATATTACCACGAGCACCAGGCTCTAGGTGGATCACCGGTATGTGGTGGTTTTTCGCATTGATCGTGACTGCTTCATACACAGCCAATATGTCTACTTTCTTGATCAACAATCGACGCACTAACTTCATTAAAGACGTTAAGGATCTATCGGAACAAACAAAAGTTTCATACGGGGCTGTGGACAATTCTTCAACGTTTAAATTCTTTAAGAATTCTAATGAATCTTTGTATCAAAAAATTTGGACAGTTATGGAGACTACCAGACCTTCAGTATTTACGAGCTCGAACGAGGAAGGTCTACACCGTGTGCTTAAAAGCGAAGGAAAATACGCGTTCTTCATGGAATCTACAGCAATTGAATATTACACCAACAGATATTGTGATTTAAAGATGGTCGGATCAAAATTAGACTCAAAAGAATATGGAATCGCAATGCCAAAAAATTTTCCGCGTAAAGGATTGATTGATCACGCAATTTTATCGCTACAACAATTAGGAGAAATAACAAGATTGAAGACGAAATGGTGGGAGATTGAAGACAACGACCCTAAACTATGCGAAAATAAGGATTCGGACAACCAAGAAGGCCAAGGTTCTTTGCAAATGGAGGATACAAGTGGTATCTTTATAGTTCTTGGAGCCGGGGGTATATTAGGACTTTTTGTTGCCATCATAGACTTTTTACTGTACGCGCAACAGATTAGTGTTAAAGAAAAGGTCACATTTCGTGAAGCTTTACTCAGTGAGTGGAAATCGTCTTTGAATCCTAGAGAATTGCATCGATTGGCCGCGCCCCCACGTTCGGCGGCTCCTTCCACCGCCACTCCATCACCGGAAAGAGAGCGATCTAGATCTAGAGCAGTTTCCGTCATCAGAGCTGCTTCCTCATTCATTAATTTTGACGAGATCTACTAA
Protein
MVQKSSTGFYHGRSLESSVIDSYSISLEMCPFTSDNHGIAALIDARPTDGICDTICLLCNRYNVSHLSIGWETTETLPTDLFTFQYHPPPDLISKAYIELIKFLQWDKFTILYESEKSFKYLEEIINNWGNPNEPILFRKLDPEGDNREAFKELIKSFILTSLNAYSLNFHEIPALMANVSTLHLTTHINDVKWKDLGINTDNEPIQLETALVADAINHVGKAIRGMMGDSRSFNFMNIPPPPELCVRGSKTDYEEVAWPLGNELRAALTQTTIKGFTGFIDFDEFGKRKNFHLHFSKLDGNSRFVSAGSWDSRTNIITTERIVNDRSKVLKPNSKIRIATKKDLPYFEIVENSNGTFYRGFVVDLIEAIFKQIKNETNIELEYEFYKVADNKLGNPIPESKKWDGIIGDLIEHKAELGVADLTVTAERLAAVDFSTPFMVLGVSMLFKQTEPPPPDMFSFMKPLSLDVWLYLATTFIVISFILLICARMSLDDWVNPHPCNLEPENLQNIWSLYNCMWLNVGAIMTQGCDILPRGPGSRWVVGMWWFFSMIVTASYMANMSTFMRNNRRNNDIEDVKALSEQTKVSYGAVQNSATYKLFKNSNDTIYKKISMVMDTSRPSVFTLSNEDGVNRVLKGKGKYAFFMESSAIDYYTKRHCNLKMVGPKLDSKEYGIAMPKNFPRRSLIDHAILSLQQIGELTRLKTKWWEIEDNVAHCENIKSDGEQDIGSLQMANTSGIFLVLGVGGILGLFVAIIEFLLYIKKMSAKDGVTFYEALIREWRVSLNPRELHKQAAPPGSAIPASTTPHTTMPLIKHRIIVISFALLFASADALRSASFPIGGLFNEQTLPSSSEIFKNKVEKIGSTAYHGRSLESSVVDSYSISLELCPYTSDNHGIVALIDARPTDGICDITCLLCNRHNVTHISIGWEPIDTLATDLFTFQYHPHPNMISKAYVALIKLLQWDKFTILYEDEGSFIRLEEIINTWDNIREPILFRKLDPKGDNRETFKELLKVAHMNYHILDCHFNNIHKYMSEITQVENSTEYQSFILTNLDAYTLDFEGMPALMANVSTLHLTTHIDDVKWQDFGIKTDDEAIQLETALVADALNHVEKAMRVMMDKPGNVLKLSHIPSPPELCARTSKAKYEEFAWPWGKQLREALIQTTFKGFTGFIELDEEGKRKNVVLHYSKLGKDSRFKLAGTWESRTNIIKTERIVNDRSTATKPNSKIRIATKKDLPYFDVVENDNGTFYRGFVVDLIEAIFNQIKNETNIELEYEFYRVAGDKLGNPIPKTKKWDGILGDLIDHKAELGVADITITAERLTAVDFSTPFMVLGISMLFKKPVQPPPDKFSFMNPLSLDVWLYLATTYIIVSYILLICARMSQEDWVNPHPCNMEPENLQNIWDLYNCMWLTMGAIMTQGCDILPRAPGSRWITGMWWFFALIVTASYTANMSTFLINNRRTNFIKDVKDLSEQTKVSYGAVDNSSTFKFFKNSNESLYQKIWTVMETTRPSVFTSSNEEGLHRVLKSEGKYAFFMESTAIEYYTNRYCDLKMVGSKLDSKEYGIAMPKNFPRKGLIDHAILSLQQLGEITRLKTKWWEIEDNDPKLCENKDSDNQEGQGSLQMEDTSGIFIVLGAGGILGLFVAIIDFLLYAQQISVKEKVTFREALLSEWKSSLNPRELHRLAAPPRSAAPSTATPSPERERSRSRAVSVIRAASSFINFDEIY

Summary

Similarity
Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
Uniprot
J9JWC6   A0A195D3G4   E2BH75  
Pubmed
20798317   
EMBL
ABLF02032802    ABLF02032813    ABLF02032814    ABLF02032817    KQ976885    KYN07450.1    + More
GL448268    EFN84996.1   
Proteomes
UP000007819    UP000078542    UP000008237   
Pfam
PF00060   Lig_chan        + More
PF10613   Lig_chan-Glu_bd
PF01094   ANF_receptor
Interpro
IPR001828   ANF_lig-bd_rcpt        + More
IPR001508   Iono_rcpt_met       
IPR028082   Peripla_BP_I       
IPR019594   Glu/Gly-bd       
IPR001320   Iontro_rcpt       
SUPFAM
SSF53822   SSF53822       
ProteinModelPortal
J9JWC6   A0A195D3G4   E2BH75  
PDB
5KUF     E-value=3.95481e-111,     Score=1032

Ontologies

KEGG
101744870    no KO assigned | (RefSeq) glutamate receptor ionotropic, kainate 2-like
GO
GO:0016021   GO:0045211   GO:0004970   GO:0030054   GO:0005234   GO:0016020   GO:0004872   GO:0005216   GO:0006811   GO:0016787   GO:0003676   GO:0016491   GO:0015930   GO:0038023  

Topology

Subcellular location
  
Length:
1726
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
164.081620000001
Exp number, first 60 AAs:
9e-05
Total prob of N-in:
0.04230
outside
1  -  468
TMhelix
469  -  488
inside
489  -  507
TMhelix
508  -  527
outside
528  -  541
TMhelix
542  -  564
inside
565  -  737
TMhelix
738  -  760
outside
761  -  1359
TMhelix
1360  -  1379
inside
1380  -  1434
TMhelix
1435  -  1457
outside
1458  -  1629
TMhelix
1630  -  1652
inside
1653  -  1726
 
 

Population Genetic Test Statistics

Pi
237.894723
Theta
193.676862
Tajima's D
0.608136
CLR
10.953325
CSRT
0.545822708864557
Interpretation
Uncertain
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