Silkworm Genome Informatics Database

Gene

KWMTBOMO13759

Pre Gene Modal

BGIBMGA009470

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_1-like_[Bombyx_mori]

Location

Bomo_Chr23(+):8649183-8656765 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.469

CDS

ATGTTCGATAGAGGAAAGTACGTGATTGTAATTATAATTTTAATCTTCAACAATGGTGAAGCAGTGTTCCGGAACTTCGAAACTTTCAAGACTGTGATCAACGTTGGAGCAGTATTTCCTCCGAATACTGTGACAGAAGTTGCATTCGGTTCAGCTCTAGCTCGCGCTTCAATGGAAAGTGAACGCTATCATTATGTTCTGAAGGCTGTGTATGCTCCACACGGAGATAGTTTTGCAGCCTCTAAAGCTGCTTGTGAATTGATAAGTCAGGGTGTCATAGCTATATTTGGTCCCACTGATCCGATTTCGGCTTCCGCTGTCGAAGCACGATGCCGTTCTGCAGGAATTCCTCATATTCAGGCTAATTGGCGTCCACCTCCGGTCCGTGGTCTAGAGCGTCCGTCGCCGCCTGGTATTAATTTGTATCCAGAGGCAGTAGCCTTGTCGAAGGCCATTGCAATATTCATTAAAGACAGCGATTGGACTACGTACACTTTACTTTATGATGATGATCAAGGCTTAATAAGACTACAGGAGATATTAAAGCACGCTGATTCGGAAGTGAAGTGGCTGGTAAGAAAACTTGCTCCTGGCGAAGACAACCGTACGTTATTAAAAACTTTGAAAGCCACTGGCGAAACTCGAGTCATACTCGACTGCCCAGCTCATCGAGTACTCGATTACCTTCGACAAGCTCGTGAAGTTAATTTCTTCGAAGATTACATGAGCTATATTCTTACTTCCCTCGACGCTCATACACTTGATCTAGAGGAGCTGCGATATGGATTATCAAACGTTACCTGTTTAAGAATATTTGATTATTCAGATGCTAGAACTAAGTCGTATTTAGCTGACTGGAAAGTGAGAGTAACACCTGATATAAAAATACCAGTTCAACCACAACAAATAACAGTTGAAACAGCTCTAGCAAGTGATGCAGCGCGGTTGATCACAGACGCCGTGGAGAGCGCTCCAGAAGAATTCAAAATTGAAGCTAAGCCAATTGAGTGTGGCTCTGAAGACAAATGGGAAATAGGAGAGGATTTCCTGAATCACATTTTAACGAATCCAATTGTCGGTATCACGAATACGATAACAGTTGATAACACTACAGGTGACCGAACAAAGTTCAATGTAGAAATTTTAGAACTGTCCAATAGTGGTTTCGCCAGTATAGCACAATGGAATTCTGATACAAACTTCAAAGCAGATTTAGCAATATGCGATTTGACGATAACATACGAACGAAGATCTTATGTTGACTTTACAACTCCGTTTATGACTTTGGGCATTTCGATTTTATATTCGAAGCCAATCCCTCCGGATCCAGAGCTATTTTCCTTCCTAAAGCCCTTTTCTGTCGATGTATGGATTTATATGGGAGCAGCTTATTTATTGGTGTCTTTACTACTTCACATTTTAGCCAGACTGGCTCCAAATGATTGGGAAAATCCTCATCCGTGTGATAAATCACCAGAAGAACTAGAAAATATCTGGCACATCAAAAACTCTTGTTGGTTAACTATGGGTTCAATCATGACTCAAGGTTCAGACATTTTGCCTAAGGGCTATTCCACGAGGTGGGTTTGCGGGATGTGGTGGTTCTTTGCTCTTATCATGTGTTCGTCATACACCGCCAATCTCGCTGCCTTCTTAACTAACGCGGCAATGGACGATTCCATTAAAAATGTTGAAGACTTAGCTTCACAAACCAAAGTTAAATATGGAACTTTATTTGGTGGTTCCACTTACTCATTTTTCAAGGTATTTAACCGTGTATTTCATGTCATCGAATATGCGACAAAGTATGGTAGCGTATTTTTGTCACACACAATATAA

Protein

MFDRGKYVIVIIILIFNNGEAVFRNFETFKTVINVGAVFPPNTVTEVAFGSALARASMESERYHYVLKAVYAPHGDSFAASKAACELISQGVIAIFGPTDPISASAVEARCRSAGIPHIQANWRPPPVRGLERPSPPGINLYPEAVALSKAIAIFIKDSDWTTYTLLYDDDQGLIRLQEILKHADSEVKWLVRKLAPGEDNRTLLKTLKATGETRVILDCPAHRVLDYLRQAREVNFFEDYMSYILTSLDAHTLDLEELRYGLSNVTCLRIFDYSDARTKSYLADWKVRVTPDIKIPVQPQQITVETALASDAARLITDAVESAPEEFKIEAKPIECGSEDKWEIGEDFLNHILTNPIVGITNTITVDNTTGDRTKFNVEILELSNSGFASIAQWNSDTNFKADLAICDLTITYERRSYVDFTTPFMTLGISILYSKPIPPDPELFSFLKPFSVDVWIYMGAAYLLVSLLLHILARLAPNDWENPHPCDKSPEELENIWHIKNSCWLTMGSIMTQGSDILPKGYSTRWVCGMWWFFALIMCSSYTANLAAFLTNAAMDDSIKNVEDLASQTKVKYGTLFGGSTYSFFKVFNRVFHVIEYATKYGSVFLSHTI

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

A0A0B4ZWH3 A0A0J7LAR4 A0A0P5BWR2 A0A3P8RK55 A0A3P9APW2 A0A3B5KW02 + More
B7Z256 A0A2U3VHZ3 A0A3Q7NQZ8 A0A3Q7XVF4 A0A2Y9KF34 A0A2Y9SF76 A0A341C2V0 A0A3B3DJX4 A0A2C9M9Z3 A0A1W4WAR3 A0A2K5MDA7 A0A0R1EDU5 A0A3Q7TI28

Pubmed

25069045 29451363 15562597 17994087 17550304

EMBL

KJ542731 AJD81615.1 LBMM01000093 KMR04997.1 GDIP01179367 JAJ44035.1 + More
AK294353 BAH11742.1 CM000161 KRK04919.1

Proteomes

UP000036403 UP000265100 UP000265140 UP000261380 UP000245340 UP000286641 + More
UP000286642 UP000248482 UP000248484 UP000252040 UP000261560 UP000076420 UP000192223 UP000233060 UP000002282 UP000286640

Pfam

PF01094   ANF_receptor        + More
PF10613   Lig_chan-Glu_bd
PF00060   Lig_chan
PF00497   SBP_bac_3

Interpro

IPR001828   ANF_lig-bd_rcpt        + More
IPR028082   Peripla_BP_I
IPR019594   Glu/Gly-bd
IPR001320   Iontro_rcpt
IPR001508   Iono_rcpt_met
IPR001638   Solute-binding_3/MltF_N

SUPFAM

SSF53822 SSF53822

ProteinModelPortal

A0A0B4ZWH3 A0A0J7LAR4 A0A0P5BWR2 A0A3P8RK55 A0A3P9APW2 A0A3B5KW02 + More
B7Z256 A0A2U3VHZ3 A0A3Q7NQZ8 A0A3Q7XVF4 A0A2Y9KF34 A0A2Y9SF76 A0A341C2V0 A0A3B3DJX4 A0A2C9M9Z3 A0A1W4WAR3 A0A2K5MDA7 A0A0R1EDU5 A0A3Q7TI28

PDB

5KUF E-value=1.8365e-52, Score=522

KEGG

105842930 no KO assigned | (RefSeq) glutamate receptor ionotropic, kainate 1-like

GO

GO:0016021 GO:0004970 GO:0045211 GO:0030054 GO:0006811 GO:0016020 GO:0005234 GO:0004872 GO:0005216 GO:0016787 GO:0003676 GO:0016491 GO:0015930 GO:0038023

Subcellular location

Length:

612

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

62.56412

Exp number, first 60 AAs:

11.30948

Total prob of N-in:

0.58000

POSSIBLE N-term signal

sequence

outside

1 - 455

TMhelix

456 - 475

inside

476 - 530

TMhelix

531 - 553

outside

554 - 612

Pi

245.938063

Theta

196.297498

Tajima's D

0.849899

CLR

0.398669

CSRT

0.615219239038048

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics