Gene

KWMTBOMO13758

Pre Gene Modal

BGIBMGA011528

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_2_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr23(+):8591235-8615045      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.316

CDS

ATGAGAGGAACAAAAGTCGTTTTCCTCGTACTATTCTTTGGACACCTTTCGGCTCTTCCGGACACGATACGAATAGGTGGACTCTTTCACCCTGAAGATGATAAGCAAGAGGTTGCATTTCGTTACGCAGTTGAAAGAGTTAATGCAGACCGCACCTTACTGCCGCGAGCCAAACTATTAGCCCAAGTCGAAACGATTTCTCCGCAGGACAGTTTTCATGCTTCGAAACGAGTATGTCATCTTCTACGAAGCGGAGTTGCAGCGATATTCGGTCCTCAATCAGCACCCGCTGCCGCTCACGTCCAGTCCATATGCGACACGATGGAACTGCCCCACTTAGAAACCAGATGGGACTATCGCACACGCCGGGAATCTTGCCTCGTAAACCTTTACCCACATCCAGCTGCGCTCAGTAGGGCGTACGTAGATCTTGTTAGAGCTTGGGGTTGGAAATCTTTCACTATAGTATACGAAAATAGCGATGGGTTAGTTCGTCTGCAGGAATTGCTCAAAGCACATGGACCTTCAGAATTGCCTGTATCTGTTCGACAGCTTCCAGATTCTCATGACTATAGACCCCTTCTGAAACAAATAAAAAACTCGGCCGAGTCCCACATTGTTCTCGACTGCGCAACCGAAAGAATAAGGGATGTACTCCAACAAGCACAACAAATCGGAATGATGTCGGATTACCATAGCTACCTTATCACATCTTTGGATCTTCACAGCGTAGATTTGGAAGAGTTTAAATACGGGGGAACAAATATAACTGCTTTAAGACTGCTCGACCCGGAACGAGCAGATGTTCAATGGGTGGTGCGAGATTGGGTTTACGATGAGGCAAGAAAAGGTCGAAAATTGCAATTAGGACACACGACAGCTAAAGAAAATATGACATTTATTAAGACAGAAACAGCCTTGATGTATGACGCAGTACATTTGTTCGCGAAAGCGTTACACGATCTCGATACATCTCAGCAAATCGACGTGAGACCGCTCTCCTGTGAGGCTGAAGATACATGGCCCCATGGGTATAGCCTCATCAATTATATGAAAATCGTCGAAATGAAAGGACTAACCGGAGTTATAAAGTTCGATCACCAAGGATTTAGAAGCGATTTCACTTTAGATATAATCGAATTGACAAGGGACGGTCTCCAAAAAGCTGGAACTTGGAATTCATCTGAAGGTGTCAACTATACGAGATCTTACGGCGAGAACCAAAAACAGATAGTTGAAATTTTGCAAAATAAGACTCTTGTAGTGACAACAATTTTGAGTGCTCCGTATTGTATGAGGAAAGAAGCGAGCGAAAAGTTAACAGGCAACGCACAATTCGAGGGCTACGCAATAGATCTTATTCATGAGATATCTAAAATTCTGGGCTTCAATTATACATTCAAACTGGCTCCTGACGGTCGATACGGGTCGTACAATCGTGAAACCAAAGAATGGGATGGAATGATTAGGGAGCTTCTCGAGCAAAGAGCAGACCTTGCCATAGCAGATCTCACCATTACCTACGACAGAGAGCAAGTGGTCGATTTCACGATGCCATTCATGAACCTCGGCATTTCAGTGCTTTACCGCAAACCAATAAAACAGCCCCCGAACCTCTTCTCATTTCTTTCTCCTTTATCACTGGACGTGTGGATTTATATGGCAACTGCCTATTTAGGGGTTTCTGTGCTGCTGTTTATATTGGCAAGGTTCACTCCATACGAATGGCATCAAACGCATTCACCTGAGGGCGAAAAAATGGAGAATATTTTCTCTCTAGCAAACTGTTTGTGGTTTGCAATCGGATCTCTAATGCAACAAAGCTGTGATTTTTTGCCCAAAGCCGTTTCAACTCGCATGGTGGCCGGGATGTGGTGGTTCTTTACTTTAATCATGATATCATCTTACACTGCCAACTTGGCTGCGTTCTTAACCGTCGAGAGAATGGACTCGCCCATTGAGAGCGCAGAAGATCTCGCAAAACAAACTAAGATCAAATACGGAGCTTTGAAGGGAGGGTCAACTGCAGCATTTTTCAGGGACTCAAACTTTTCAACATACCAGCGAATGTGGTCATTCATGGAATCCGCCAGGCCATCAGTATTCGCAAATACTAACAAGGAGGGAGAAGAAAGGGTGGTGAGGGGAAAGGGCGCTTACGCTTATCTAATGGAGTCTACGACCATAGAATATGTGGTGGAAAGGAACTGTGATCTAACGCAAGTCGGAGGGATGCTCGACTCTAAAGGATATGGAATTGCTATGCCACCAAACTCGCCGTATCGCACAGCCATAAGCGGGGCTGTTTTGAAGCTTCAAGAAGAAGGAAAATTGCACATTCTCAAAACGAAATGGTGGAAGGAAAAACGCGGTGGAGGTTCATGCAGGGATGAAACTTCCAAGTCCTCGTCAACTGCAAACGAGCTAGGTCTAGCCAACGTGGGTGGAGTTTTCGTTGTCCTCATGGGAGGAATGGGAGTAGCATGCGTGATCGCGGTTTGCGAATTCGTATGGAAGTCACGTAAAGTAGCCGTCGATGAACGGAAAGAGGAGGCGTCACTATGCTCGGAGATGGCGTCTGAATTGCGTTCGGCGCTCAAGTGCCCTGGTAGCGCGGGTGGGGGCAGTGGCAGCGGGGCAGCGCGGGATGGCGCGGGTTCCCCATACCTTCACTACGGGTTCAGTACAAAGAGCCAACTCCACTAG

Protein

MRGTKVVFLVLFFGHLSALPDTIRIGGLFHPEDDKQEVAFRYAVERVNADRTLLPRAKLLAQVETISPQDSFHASKRVCHLLRSGVAAIFGPQSAPAAAHVQSICDTMELPHLETRWDYRTRRESCLVNLYPHPAALSRAYVDLVRAWGWKSFTIVYENSDGLVRLQELLKAHGPSELPVSVRQLPDSHDYRPLLKQIKNSAESHIVLDCATERIRDVLQQAQQIGMMSDYHSYLITSLDLHSVDLEEFKYGGTNITALRLLDPERADVQWVVRDWVYDEARKGRKLQLGHTTAKENMTFIKTETALMYDAVHLFAKALHDLDTSQQIDVRPLSCEAEDTWPHGYSLINYMKIVEMKGLTGVIKFDHQGFRSDFTLDIIELTRDGLQKAGTWNSSEGVNYTRSYGENQKQIVEILQNKTLVVTTILSAPYCMRKEASEKLTGNAQFEGYAIDLIHEISKILGFNYTFKLAPDGRYGSYNRETKEWDGMIRELLEQRADLAIADLTITYDREQVVDFTMPFMNLGISVLYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILARFTPYEWHQTHSPEGEKMENIFSLANCLWFAIGSLMQQSCDFLPKAVSTRMVAGMWWFFTLIMISSYTANLAAFLTVERMDSPIESAEDLAKQTKIKYGALKGGSTAAFFRDSNFSTYQRMWSFMESARPSVFANTNKEGEERVVRGKGAYAYLMESTTIEYVVERNCDLTQVGGMLDSKGYGIAMPPNSPYRTAISGAVLKLQEEGKLHILKTKWWKEKRGGGSCRDETSKSSSTANELGLANVGGVFVVLMGGMGVACVIAVCEFVWKSRKVAVDERKEEASLCSEMASELRSALKCPGSAGGGSGSGAARDGAGSPYLHYGFSTKSQLH

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

A0A345BF16   A0A2H1WGZ3   A0A0N1I591   A0A0F7QEG0   A0A3S2NLN9   A0A0L7LQ72   + More
A0A075T818   A0A2A4J849   A0A223HCX9   A0A194RUK6   H9JPS3   A0A0V0J2K9   A0A2J7QQK9   A0A2J7QQL5   A0A2J7QQL0   A0A182FK05   A0A1S4G9Z3   A0A0M4JB15   A0A158NJ03   A0A1W4XFF8   A0A1S4GA38   A0A3L8DZQ4   A0A1Y9GKF3   A0A139WN33   Q7PRP7   A0A1W4XE85   A0A084WPK1   A0A2M4BDE6   F5HJZ1   A0A1W4XF50   A0A1W4X4N7   A0A088ACV5   A0A2A4J773   A0A1Y1KUX6   A0A139WN75   A0A023F5M1   T1H7P3   A0A195DUH1   A0A195FIP6   A0A195D3G4   A0A1S4EBS0   A0A1S4EC64   A0A2C9H8A3   B4LWJ1   B4JUF1   B4K8X7   B4NFR8   Q9VDH5   B4PPU2   B3M354   B4II60   B3P313   A0A1W4VBA5   Q8MS48   A0A3B0KPF1   B4G529   Q299E3   T1PA03   A0A1I8P1D6   W8BH14   A0A1A9V4Z6   A0A0K8UBA7   A0A0A1XQS4   J9JWC6   A0A0M3QXZ2   A0A1A9X5X4   A0A1B0AWM1   A0A2H8TTS0   A0A1B0FK80   B4R1Q6   A0A1A9Z7D1   A0A0L0C0C3   A0A1A9W569   A0A2R7WBG8   A0A026WEA9   A0A034W605   A0A2R7WBZ6   A0A2H8TFU0   E0VYS6   A0A195BBT6   A0A1L2YXN5   E0VK11   A0A2S2PWS9   A0A0P5VYZ8   A0A0P6BPL8   E9FS57   A0A0P5Y8A0   A0A0P6GD71   A0A0P5X0X0   A0A0P4YAD7   A0A182Q917   A0A182N102   A0A182M854   A0A182KFG5   A0A182P835  

Pubmed

29727827    26354079    25803580    26227816    25027790    28150741    + More
19121390    27006164    12364791    26265180    21347285    30249741    18362917    19820115    24438588    28004739    25474469    17994087    27889096    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    15632085    25315136    24495485    25830018    26108605    24508170    25348373    20566863    21292972   

EMBL

MG820669    AXF48840.1    ODYU01008610    SOQ52341.1    KQ459037    KPJ04255.1    + More
LC017781    BAR64795.1    RSAL01000042    RVE50836.1    JTDY01000347    KOB77595.1    KF768733    AIG51927.1    NWSH01002576    PCG67936.1    KY283580    AST36240.1    KQ459833    KPJ19821.1    BABH01015229    GDKB01000032    JAP38464.1    NEVH01012087    PNF30870.1    PNF30867.1    PNF30869.1    AAAB01008847    KP843209    ALD51346.1    ADTU01017309    ADTU01017310    ADTU01017311    ADTU01017312    ADTU01017313    ADTU01017314    ADTU01017315    ADTU01017316    ADTU01017317    ADTU01017318    QOIP01000002    RLU25960.1    APCN01001007    APCN01001008    APCN01001009    APCN01001010    APCN01001011    APCN01001012    KQ971312    KYB29342.1    EAA06836.6    ATLV01025088    ATLV01025089    ATLV01025090    ATLV01025091    ATLV01025092    KE525369    KFB52145.1    GGFJ01001924    MBW51065.1    EGK96607.1    PCG67935.1    GEZM01076945    JAV63525.1    KYB29343.1    GBBI01002254    JAC16458.1    ACPB03008552    KQ980334    KYN16523.1    KQ981523    KYN40142.1    KQ976885    KYN07450.1    CH940650    EDW67656.1    CH916374    EDV91121.1    CH933806    EDW16574.1    CH964251    EDW83135.1    AE014297    AAF55818.1    CM000160    EDW96192.1    CH902617    EDV42454.2    CH480842    EDW49604.1    CH954181    EDV48327.1    AY119103    AAM50963.1    OUUW01000013    SPP87746.1    CH479179    EDW24695.1    CM000070    EAL27760.2    KA645514    AFP60143.1    GAMC01010282    JAB96273.1    GDHF01028684    JAI23630.1    GBXI01000618    JAD13674.1    ABLF02032802    ABLF02032813    ABLF02032814    ABLF02032817    CP012526    ALC46719.1    JXJN01004815    JXJN01004816    GFXV01005416    MBW17221.1    CCAG010014365    CM000364    EDX12165.1    JRES01001168    KNC24884.1    KK854577    PTY17047.1    KK107250    EZA54440.1    GAKP01007921    JAC51031.1    PTY17048.1    GFXV01001172    MBW12977.1    DS235846    EEB18532.1    KQ976530    KYM81659.1    KX016774    APF30023.1    DS235235    EEB13717.1    GGMS01000159    MBY69362.1    GDIP01167678    GDIP01142972    GDIP01107730    GDIP01059632    LRGB01000848    JAL95984.1    KZS15806.1    GDIP01013465    JAM90250.1    GL732523    EFX90374.1    GDIP01061478    JAM42237.1    GDIQ01035005    JAN59732.1    GDIP01079329    JAM24386.1    GDIP01230363    JAI93038.1    AXCN02001376    AXCM01004371   

Proteomes

UP000053268    UP000283053    UP000037510    UP000218220    UP000053240    UP000005204    + More
UP000235965    UP000069272    UP000005205    UP000192223    UP000279307    UP000075840    UP000007266    UP000007062    UP000030765    UP000005203    UP000015103    UP000078492    UP000078541    UP000078542    UP000079169    UP000076407    UP000008792    UP000001070    UP000009192    UP000007798    UP000000803    UP000002282    UP000007801    UP000001292    UP000008711    UP000192221    UP000268350    UP000008744    UP000001819    UP000095301    UP000095300    UP000078200    UP000007819    UP000092553    UP000092443    UP000092460    UP000092444    UP000000304    UP000092445    UP000037069    UP000091820    UP000053097    UP000009046    UP000078540    UP000076858    UP000000305    UP000075886    UP000075884    UP000075883    UP000075881    UP000075885   

PRIDE

H9JPS3    Q9VDH5    Q8MS48   

Pfam

PF01094   ANF_receptor        + More
PF00060   Lig_chan
PF10613   Lig_chan-Glu_bd

Interpro

IPR019594   Glu/Gly-bd        + More
IPR001320   Iontro_rcpt       
IPR028082   Peripla_BP_I       
IPR001508   Iono_rcpt_met       
IPR001828   ANF_lig-bd_rcpt       

SUPFAM

SSF53822   SSF53822       

ProteinModelPortal

A0A345BF16   A0A2H1WGZ3   A0A0N1I591   A0A0F7QEG0   A0A3S2NLN9   A0A0L7LQ72   + More
A0A075T818   A0A2A4J849   A0A223HCX9   A0A194RUK6   H9JPS3   A0A0V0J2K9   A0A2J7QQK9   A0A2J7QQL5   A0A2J7QQL0   A0A182FK05   A0A1S4G9Z3   A0A0M4JB15   A0A158NJ03   A0A1W4XFF8   A0A1S4GA38   A0A3L8DZQ4   A0A1Y9GKF3   A0A139WN33   Q7PRP7   A0A1W4XE85   A0A084WPK1   A0A2M4BDE6   F5HJZ1   A0A1W4XF50   A0A1W4X4N7   A0A088ACV5   A0A2A4J773   A0A1Y1KUX6   A0A139WN75   A0A023F5M1   T1H7P3   A0A195DUH1   A0A195FIP6   A0A195D3G4   A0A1S4EBS0   A0A1S4EC64   A0A2C9H8A3   B4LWJ1   B4JUF1   B4K8X7   B4NFR8   Q9VDH5   B4PPU2   B3M354   B4II60   B3P313   A0A1W4VBA5   Q8MS48   A0A3B0KPF1   B4G529   Q299E3   T1PA03   A0A1I8P1D6   W8BH14   A0A1A9V4Z6   A0A0K8UBA7   A0A0A1XQS4   J9JWC6   A0A0M3QXZ2   A0A1A9X5X4   A0A1B0AWM1   A0A2H8TTS0   A0A1B0FK80   B4R1Q6   A0A1A9Z7D1   A0A0L0C0C3   A0A1A9W569   A0A2R7WBG8   A0A026WEA9   A0A034W605   A0A2R7WBZ6   A0A2H8TFU0   E0VYS6   A0A195BBT6   A0A1L2YXN5   E0VK11   A0A2S2PWS9   A0A0P5VYZ8   A0A0P6BPL8   E9FS57   A0A0P5Y8A0   A0A0P6GD71   A0A0P5X0X0   A0A0P4YAD7   A0A182Q917   A0A182N102   A0A182M854   A0A182KFG5   A0A182P835  

PDB

5KUF     E-value=0,     Score=2069

KEGG

101744288    K05313 glutamate receptor, ionotropic, invertebrate | (RefSeq) glutamate receptor ionotropic, kainat

GO

GO:0016021   GO:0045211   GO:0004970   GO:0030054   GO:0006811   GO:1904315   GO:0008066   GO:0050804   GO:0035249   GO:0005886   GO:0022849   GO:0048786   GO:1900075   GO:0098703   GO:0060025   GO:0015277   GO:0005234   GO:0016020   GO:0004872   GO:0005216   GO:0016787   GO:0003676   GO:0016491   GO:0015930   GO:0038023  

Subcellular location

  

SignalP

Position:   1 - 18,         Likelihood:  0.982933

 

 

Length:

901

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

78.6203000000002

Exp number, first 60 AAs:

3.77324

Total prob of N-in:

0.18464

outside

1  -  549

TMhelix

550  -  569

inside

570  -  623

TMhelix

624  -  646

outside

647  -  815

TMhelix

816  -  838

inside

839  -  901

 

 

Pi

229.693628

Theta

190.020616

Tajima's D

0.714996

CLR

0.178828

CSRT

0.575821208939553

Interpretation

Uncertain