Gene

KWMTBOMO13757

Pre Gene Modal

BGIBMGA011486

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_3-like?_partial_[Bombyx_mori]

Location

Bomo_Chr23(-):8558516-8566584      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.711

CDS

ATGTGGAATATAGGTTGTAAGGAATCTGATTGTTCGTGGTCTATAATAATTCTAATAAGTCTTCATTTAGTTAATATTACGTGCGGCGACAAAACTATAGGTGCGATTTGCGATGACGGAACTTTCTTATACGAAGCAGCAATTAAAGTTGCAGTCGCTTCAATAACAGAAGAAGAGGAGAGTCCATTGATAGCAAATGTAATACGAACATCTCCCGGCGATTTATTGGAAACGGAAGATGCCGTTTGCTCGTTACTTGAGAAGAATGTTTATGGAATATTTGGGCCGACGAAAAAAGACTCGATCCTCCATGTTCAATCGATCACAGATAATCTAGAAATACCTCAAGTTATAAACCAAGCAATGGAGACACAGAACCGTAATTGGTCAGCAGTAAATCTGTATCCACATCACATCAGCTATTCACAGCTTTTCACAGATCTGATAGAGATGAAGGATTGGAAAGAATTTACTATAATTTATGAGGGCAGCGAACTTTTACCATTTTTGGAAAATATTTTCACTATGCAGGACTTAAACAAAAGACAGAAGATTTTGATGAACGTCGTTCAATTACCCGATGGAGACGATTTCAGGTCTCAGCTGAAAGCAATAAAAAAATCTGGATCAGTTAATTTCGTTTTAGATTGCACTCTCGAAAATTTATCAACGTTTTTAGAACAAGCACAGCAAGTCGGCATAATGTCTGATCAACACAGCTATCTCATAATGAATCCCGATTTCCAAACAATCGATGTCGATCCATTTAAGCATGGAGGTTCGAATATAACAGGTATACGCTTCTTTGATCCTAATCTAGATTCCATTCAGAAGTTCATTTCAGATATAAACGAGAAAGTAGTCGAATTATCCGAAGGTCAGTTAGAAAAAGCTGTTACAGAAAATGGTTTGACTTTTGACTTGGCTTTAATGTATGATGCCGTTACTATTTATGGGTCAGCATTAAACGCACTAGGACTCGAAGAAGGTGCAAATATAACATGTGATCAAGACGACGGCTGGGAGTTTGGTTCTAGCATCATTAATTATATACGAACTATGGAAATTGATGGAATGACGGGAATAATAAAATTCGATGACGAAGGTTTTCGTTCATATTTTGAAGTTGATGTATTAGAAATTATGCCACACGGTTTAGAAAAGGTTGGATCGTGGAATATTGAAGATGGTTTGATACAGGACAGAAATTTTATAGCTCCAGCTGAACCAGAAAGTTCTGAGACGATGAAAGGAAAGCATTTCATTATTTTAACTGCTTTGAGTGCACCCTATGGAATGCTCAAGGAATCATCAAAAAGACTCGAAGGGAACGAACGATACGAAGGATTTGGTATCGAATTAATAGAGGAACTAGCCAAAATGAACGAATTCAATTATACCTTCGAGCTACAAACTGACGGTGTTTATGGATCTTTCGATACAACCACGAAACAGTGGAATGGAATGATGAAGAAAATAATGGACGGTATTGTAGACTTCGGCATAACTGATTTAACGATAACTTCAACACGACAGAAAGCAGTCGACTTTACAAGTCCGTTTATGACGTTAGGAATAACAATATTATACAAAAAACCCACCAAAGAACCACCAGATTTGTTCTCATTTATTTCGCCGCTATCACCAGGAGTTTGGAGCTGGCTAGCGGGAGCTTATATTGGAGTATCAGTTCTGTTATTCGCATTGGGACGAATGGCCCCCGAAGAGTGGCAGAATCCGTACCCGTGTATCGAAGAACCTGAGACCTTGGACAATCAATTCACATTAGCCAATTCCTTTTGGTTTACTCTAGGAAGTGTTCTCACACAAGGATCTGAGATAGCTCCAATAGCCGTTTCAACTCGTATGGCCGGTAGTATGTGGTGGTTCTTCACTTTGATTATGGTGTCGTCCTATACAGCCAACCTCGCCGCTTTCCTAACTATAGAATCAAAGTTTTATGCTATAAAAAGCGTGCAAGATTTAGCCAACAATCCCTACGGTATAACATATGGAGCAAAAAAGAATGGAGCAACATTTAGCTTTTTCATGGAATCCGACAATTTATTGTATCAGAAAATGTACCATTACATGGACGAGCATCCTGAATATCAAACTGCAACGAATGACCAAGGACTTGAAAGAGTAAAATCCGAAAATGAAAATTACGCTTTCCTCATGGAGTCCACATCAATTGAGTATATGGTTGAAAGGAATTGCGACGTTGCTCAAGTCGGCGGCCTATTGGATAACAAAGGATACGGCATTGCCATGAAAAAAAACTCACCTTACCGACAACCGATGAGTGAATCTATATTACAGCTACAGGAAGATGGTACTTTGACTAAATTAAAAGATAAGTGGTGGAAAGAAAAAAGAGGCGGTGGTGCTTGTGAGGATGACGATACCGCTGGCGGTGAAGCCCAACCGTTGGTGTTAGCAAACGTCGGTGGTGTTTTCATAGTTCTAGTGGTCGGCTCAGCAATGGCGGCTGTATGTGCATTTTTCGAGATGTTATTCGATGTTTGGATGATTTGTCGGAGACATAAATTGCCGTTCCTAGATGAATTGAAAGCGGAGTTGAGATTTATTCTGAGTTTTAGTGGAGACACGAAGCCGGTACGTCACCGTGAATTGTCAGGTAGTGGATCACGAAGCACCAAAAACGACGAGGAAGATAAGAATTGTGAATTGGAATCTTTGGATGATGGAAATAAATTGGATCCGGCACCAACGCCGAGATCTGAAAGGTCCACGCATTCACACCACACAATACATAGTAGAAGAACAAGCAATGCAGTTCAAATGGCTAAAATGAGAAAATATAGTATTAGAAGTGGCATATAA

Protein

MWNIGCKESDCSWSIIILISLHLVNITCGDKTIGAICDDGTFLYEAAIKVAVASITEEEESPLIANVIRTSPGDLLETEDAVCSLLEKNVYGIFGPTKKDSILHVQSITDNLEIPQVINQAMETQNRNWSAVNLYPHHISYSQLFTDLIEMKDWKEFTIIYEGSELLPFLENIFTMQDLNKRQKILMNVVQLPDGDDFRSQLKAIKKSGSVNFVLDCTLENLSTFLEQAQQVGIMSDQHSYLIMNPDFQTIDVDPFKHGGSNITGIRFFDPNLDSIQKFISDINEKVVELSEGQLEKAVTENGLTFDLALMYDAVTIYGSALNALGLEEGANITCDQDDGWEFGSSIINYIRTMEIDGMTGIIKFDDEGFRSYFEVDVLEIMPHGLEKVGSWNIEDGLIQDRNFIAPAEPESSETMKGKHFIILTALSAPYGMLKESSKRLEGNERYEGFGIELIEELAKMNEFNYTFELQTDGVYGSFDTTTKQWNGMMKKIMDGIVDFGITDLTITSTRQKAVDFTSPFMTLGITILYKKPTKEPPDLFSFISPLSPGVWSWLAGAYIGVSVLLFALGRMAPEEWQNPYPCIEEPETLDNQFTLANSFWFTLGSVLTQGSEIAPIAVSTRMAGSMWWFFTLIMVSSYTANLAAFLTIESKFYAIKSVQDLANNPYGITYGAKKNGATFSFFMESDNLLYQKMYHYMDEHPEYQTATNDQGLERVKSENENYAFLMESTSIEYMVERNCDVAQVGGLLDNKGYGIAMKKNSPYRQPMSESILQLQEDGTLTKLKDKWWKEKRGGGACEDDDTAGGEAQPLVLANVGGVFIVLVVGSAMAAVCAFFEMLFDVWMICRRHKLPFLDELKAELRFILSFSGDTKPVRHRELSGSGSRSTKNDEEDKNCELESLDDGNKLDPAPTPRSERSTHSHHTIHSRRTSNAVQMAKMRKYSIRSGI

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

H9JPN1   A0A075T675   A0A2A4J8S4   A0A2H1VML2   A0A2W1BQI7   A0A0B5A1Y0   + More
A0A194RR85   A0A0N0PA90   A0A212ER31   A0A1S4F217   Q17HZ0   Q7QCT5   A0A1Q3G542   A0A1Q3G4Z8   A0A336M7Y1   A0A336M1P8   A0A084WPK2   A0A182VF89   A0A182IWS9   A0A182P839   A0A1S4G9X1   A0A182X5A4   A0A182QKT0   A0A182V8U1   Q5TUR9   A0A1Q3FV55   F5HKL2   A0A182RIF0   A0A1Q3FVD5   A0A182I9N1   A0A182N793   A0A182K4K3   A0A182TY63   A0A182RJ10   A0A182MGS7   A0A1B6DVP7   A0A182VVA4   A0A182YEZ7   A0A182TZ79   A0A336MCA3   E0VYS5   A0A336KBS6   A0A182W0P2   A0A2J7QQF6   A0A2J7QQG5   A0A182FK05   A0A182H5J6   A0A067QJY2   A0A0K8VI05   A0A182PQM6   A0A0A1XKL4   A0A140CQD2   A0A1B6CLB4   A0A140CQC1   A0A034VCG6   T1H862   A0A182LGK9   J9JWC6   A0A182HTL3   A0A0M4JB15   A0A1B6J4X8   W8BXV3   A0A2J7QQL5   A0A0M3SBL8   A0A1J1J1Y8   A0A2J7QQL0   W8BL80   A0A1J1IXR3   A0A0F7QEG0   A0A0G2UKD8   A0A3L8DZQ4   T1H7P3   A0A2J7QQF4   A0A075T818   A0A3S2NLN9   A0A2A4J849   A0A182XHS4   A0A1A9Z7D4   A0A023F5M1   A0A1W4X4N7   A0A2J7QQK9   A0A0K8VYA0   A0A0R1E1K4   A0A0K8V9K4   A0A1W4XE85   A0A2S2Q418   Q0KI38   B3M356   A0A0V0J2K9   A0A0B4KHJ0   A0A154NX52   A0A1S4GA38   B4PQ90   F5HJZ1   A0A2H8TH02   A0A1W4VBC7   T1PEB1   A0A1W4XFF8   A0A3B0K4X3  

Pubmed

19121390    25027790    28756777    26354079    22118469    17510324    + More
12364791    24438588    25244985    20566863    26483478    24845553    25830018    26752702    25348373    20966253    26265180    24495485    25803580    30249741    25474469    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    27006164   

EMBL

BABH01015227    KF768731    AIG51925.1    NWSH01002576    PCG67934.1    ODYU01003373    + More
SOQ42048.1    KZ150075    PZC73973.1    KJ542729    AJD81613.1    KQ459833    KPJ19820.1    KQ459037    KPJ04254.1    AGBW02013122    OWR43953.1    CH477244    EAT46286.1    AAAB01008859    EAA07814.5    GFDL01000159    JAV34886.1    GFDL01000165    JAV34880.1    UFQS01000674    UFQT01000674    SSX06068.1    SSX26424.1    UFQS01000248    UFQT01000248    SSX02000.1    SSX22377.1    ATLV01025092    KE525369    KFB52146.1    AAAB01008847    AXCN02001179    EAL41148.4    GFDL01003610    JAV31435.1    EGK96764.1    GFDL01003609    JAV31436.1    APCN01001006    APCN01001007    AXCM01007252    GEDC01007565    JAS29733.1    SSX06067.1    SSX26423.1    DS235846    EEB18531.1    SSX01999.1    SSX22376.1    NEVH01012087    PNF30819.1    PNF30817.1    JXUM01111893    KQ565546    KXJ70888.1    KK853270    KDR09169.1    GDHF01013780    JAI38534.1    GBXI01002423    JAD11869.1    KR998374    AMH85993.1    GEDC01023044    JAS14254.1    KR998363    AMH85982.1    GAKP01019150    JAC39802.1    ACPB03008552    ABLF02032802    ABLF02032813    ABLF02032814    ABLF02032817    APCN01000567    KP843209    ALD51346.1    GECU01013484    JAS94222.1    GAMC01012486    GAMC01012485    JAB94069.1    PNF30867.1    KP843215    ALD51352.1    CVRI01000063    CRL04873.1    PNF30869.1    GAMC01012484    GAMC01012482    JAB94071.1    CRL04872.1    LC017781    BAR64795.1    KP743677    AKI28993.1    QOIP01000002    RLU25960.1    PNF30815.1    KF768733    AIG51927.1    RSAL01000042    RVE50836.1    PCG67936.1    GBBI01002254    JAC16458.1    PNF30870.1    GDHF01008505    JAI43809.1    CM000160    KRK02975.1    GDHF01016670    JAI35644.1    GGMS01003263    MBY72466.1    AE014297    ABI31186.2    CH902617    EDV42456.2    GDKB01000032    JAP38464.1    AGB96168.1    KQ434777    KZC04142.1    EDW96199.1    EGK96607.1    GFXV01001516    MBW13321.1    KA647076    AFP61705.1    OUUW01000013    SPP87752.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000008820    + More
UP000007062    UP000030765    UP000075903    UP000075880    UP000075885    UP000076407    UP000075886    UP000075900    UP000075840    UP000075884    UP000075881    UP000075902    UP000075883    UP000075920    UP000076408    UP000009046    UP000235965    UP000069272    UP000069940    UP000249989    UP000027135    UP000015103    UP000075882    UP000007819    UP000183832    UP000279307    UP000283053    UP000092445    UP000192223    UP000002282    UP000000803    UP000007801    UP000076502    UP000192221    UP000268350   

PRIDE

H9JPN1    Q0KI38   

Pfam

PF01094   ANF_receptor        + More
PF00060   Lig_chan
PF10613   Lig_chan-Glu_bd
PF00497   SBP_bac_3

Interpro

IPR001828   ANF_lig-bd_rcpt        + More
IPR001508   Iono_rcpt_met       
IPR019594   Glu/Gly-bd       
IPR001320   Iontro_rcpt       
IPR028082   Peripla_BP_I       
IPR001638   Solute-binding_3/MltF_N       
IPR013320   ConA-like_dom_sf       

SUPFAM

SSF53822   SSF53822        + More
SSF49899   SSF49899       

ProteinModelPortal

H9JPN1   A0A075T675   A0A2A4J8S4   A0A2H1VML2   A0A2W1BQI7   A0A0B5A1Y0   + More
A0A194RR85   A0A0N0PA90   A0A212ER31   A0A1S4F217   Q17HZ0   Q7QCT5   A0A1Q3G542   A0A1Q3G4Z8   A0A336M7Y1   A0A336M1P8   A0A084WPK2   A0A182VF89   A0A182IWS9   A0A182P839   A0A1S4G9X1   A0A182X5A4   A0A182QKT0   A0A182V8U1   Q5TUR9   A0A1Q3FV55   F5HKL2   A0A182RIF0   A0A1Q3FVD5   A0A182I9N1   A0A182N793   A0A182K4K3   A0A182TY63   A0A182RJ10   A0A182MGS7   A0A1B6DVP7   A0A182VVA4   A0A182YEZ7   A0A182TZ79   A0A336MCA3   E0VYS5   A0A336KBS6   A0A182W0P2   A0A2J7QQF6   A0A2J7QQG5   A0A182FK05   A0A182H5J6   A0A067QJY2   A0A0K8VI05   A0A182PQM6   A0A0A1XKL4   A0A140CQD2   A0A1B6CLB4   A0A140CQC1   A0A034VCG6   T1H862   A0A182LGK9   J9JWC6   A0A182HTL3   A0A0M4JB15   A0A1B6J4X8   W8BXV3   A0A2J7QQL5   A0A0M3SBL8   A0A1J1J1Y8   A0A2J7QQL0   W8BL80   A0A1J1IXR3   A0A0F7QEG0   A0A0G2UKD8   A0A3L8DZQ4   T1H7P3   A0A2J7QQF4   A0A075T818   A0A3S2NLN9   A0A2A4J849   A0A182XHS4   A0A1A9Z7D4   A0A023F5M1   A0A1W4X4N7   A0A2J7QQK9   A0A0K8VYA0   A0A0R1E1K4   A0A0K8V9K4   A0A1W4XE85   A0A2S2Q418   Q0KI38   B3M356   A0A0V0J2K9   A0A0B4KHJ0   A0A154NX52   A0A1S4GA38   B4PQ90   F5HJZ1   A0A2H8TH02   A0A1W4VBC7   T1PEB1   A0A1W4XFF8   A0A3B0K4X3  

PDB

5KUF     E-value=1.59355e-158,     Score=1439

KEGG

101744148    K05313 glutamate receptor, ionotropic, invertebrate | (RefSeq) glutamate receptor ionotropic, kainat

GO

GO:0016021   GO:0004970   GO:0045211   GO:0030054   GO:1904315   GO:0008066   GO:0005886   GO:0050804   GO:0035249   GO:0006811   GO:0015277   GO:0060025   GO:0016020   GO:0004872   GO:0005216   GO:0005234   GO:0016787   GO:0003676   GO:0016491   GO:0015930   GO:0038023  

Subcellular location

  

Length:

948

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

70.1369900000001

Exp number, first 60 AAs:

1.36427

Total prob of N-in:

0.06734

outside

1  -  549

TMhelix

550  -  569

inside

570  -  626

TMhelix

627  -  649

outside

650  -  817

TMhelix

818  -  840

inside

841  -  948

 

 

Pi

219.921184

Theta

177.450055

Tajima's D

0.741901

CLR

0

CSRT

0.584320783960802

Interpretation

Uncertain