Gene

KWMTBOMO13756

Pre Gene Modal

BGIBMGA011527

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_2-like_[Bombyx_mori]

Location

Bomo_Chr23(+):8541005-8556762      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.681

CDS

ATGTCTGTGCTTTGTGTTTTGTTTTTGTTATTATTTTCTACAAGATTGGTTTCCACTGAAGAAAATCTTAGAACAATAGGAGGTATATTTTACCAAGATGCTGAAGATATGAAAGTCGCTTTGAAAATTAGTGCCGAAATTTATAATTTCTCTGTTTCGATAAAAGAGGTGTCACAAAGAGGAGAAATACTGGAAATTGAGAGATATGTTTGCGAATTAGCAGAGGAAGGAGTTTTGGGGATCATTGATGGAATTGGTGGACATGCAAGTGAACATATCCAAGCTATAACTGATATGCTGGAGCTGCCGCATGTTTCTATACAGCACATTGATTTATTTGCAAAGAATTGGTCTATAATAAATATCTTTCCCAGTCCTATTGCCTACAATAAAGTTTTAAAGAGTTTGGTAGAGACAAAGGACTGGAACAATTTCACAATATTGTACATCAGAGGGCATAGTTTATTGAGAGCAACAGAGCTGCTGAGAATGGGCAACAGCATTGACAAACGCTCCGTTACTATAAGAGAACTCAACGGAAACGATTACAGAGATGTATTAATTGACGCCAAAAAAAATGGCTGTGTGAACTTCCTGGTGGATTGTCCGGCACGTAATTTGGAACAACTTCTGCAACACGCGCAACAAGTTGGTCTAATGGCTGAAGAGCACTCCTATTTATTCGTGTCGCCAGATTTGTTTACATTAGACTTGGAACGATACAGATACAGCGGCGTGAATATTACAGGGTTTCGTATAATAGATCCTGCAGCTAACGAGGATCTATGGAAATTCACAATACAATTCAATACTGAAACAGTACAAAATCTCGAACCGGTACAAATTAAAACCGAAGTACTGCTTATTCATGATGCGGTTGTGGTTTTTAATGAATCCCTGAAGAAAGTGAACGTTACATCGACACAATTGAGCTGTGACAACTACGACTCTTGGAAATATGGATCGACGCTTATCAACTTTATGAGGACAAATAGAGTGAAAGGTTTGACACGGTCCTTGATATTCGACGGATTCGGACAGAGAAATGAAGTTATCTTCGATCTGCTCGAATTGACTTCATCTGGTAATCAAACAATTGGACACTGGATCGATGACAAATTAAAAATAGAGAGACCTTTTATCCCAGATGCACAGATCGGTGAAGAATCTATTCTGAAAAACAAAACGCTACGAGTATTAATTGCACCGACTGCACCATATGGATATGTAAAAAATTGGCATACAGCACTAGAAGGTAATGACCGGTATGAGGGATTTGCCGTGGATCTCATTCAAAAACTATCAGATGCGCTCGGCTTTAATTATGAGTTCATTTTAGAAGAAAATTACGGTAGAAAGGACCCTGTAACACACAAATGGGGTGGTATGATATATCAATTAATAACTGAAAAAGCTGACCTGGCCATATGTGATCTGTCTATAACAGCTGAAAGACAGTCTGTTATCGATTTTTCACAACCTTTTATGACTCTTGGCATCGGTATTTTATACAAGCGACCGAGTAAAGAGCCCCCTGAGATGTTCTCGTTCATGGCCGTCTTTTCTAAGGAGGTCTGGTATTATATGATGTTAATTCAAATGGGCTTAGGAGTAATCATGATATTCGTCGGCCGTATATCTCATAAGGAGTGGCAGAATCCAGTACCTTGTATCGAACAACCAGAGGAATTGAGCAATCAATTTAGTTTCGCCAACGCTTTGTGGCTCATTATCGGTTCTGTAATGCAACAAGGATCCGAAATAGCGCCCATAGCATTAGCCCCTAGAATGATTACTAGTGTGTGGTGGTTCTTCACAATGGTGATGGTGGCCTCATACGTGGGTATTCTTGTTGCTTTCCTCACAGTTCAGAAAGGTTCGATGCCATTTCAATCACTCGAGAGCCTTTATGAACACAAAAGTATTTCTTATGGAGCTAAAGAAAATGGATCCACTCATTCTTTTTTTATGGATTCGCCGAAGACACTGCATAAAAAAATGTATGCAAGAATGAAGGAGCAAGGATGGCTTGTTCCACAAAATGATATTGGCGTTGCGAAGGCTGAAACGGAACCCTACGCATTCTTTATGGAATCAACATCCATAGAATATACAACGGAAAGACATTGCGATCTAATGCAAGTAGGTGATTTGCTTGACTCCAAAACATATGGCATCGGAATGAAAAAGAAGTCACCGTACAAAAGATATATAGATGATGCTTTGTTAATATTAAAAGAAAAAGGTGAGATACAAAAATTGAAAGACATTTGGTGGAAAGAGAAAAGAGGCGGCGGTAATTGTGGACAAAACAGTGACGAGGAAGAACCACAATTAGAAATGAAGAACATGGTCGGGGCATTCGTCGTGTTAGGCGTGGGAAGTGTATTCGGGCTCTTCATATCAATACTGGATATGTTGTGGGGAGTCTTCAAACGATCTGTTAAATATAGAACCACTTTCAAATTCGAGTTGATCGAAGAGCTGAAATTCGTGATCAAGTTCAGTGGAAGCGTGAAACCGGTGAATCGAGTTCAGAAGCAGGAAGGCAGCTTGGAGAATCTAGCCGAAGTGGCTGAAGGGAAAGATGAAATACGATCGTTACGACCATTAGTCGTAGCGTCCGAGGCGAAATGGACACCGACCTTTAGACCACAATCGTTCACCGACTTACATTAG

Protein

MSVLCVLFLLLFSTRLVSTEENLRTIGGIFYQDAEDMKVALKISAEIYNFSVSIKEVSQRGEILEIERYVCELAEEGVLGIIDGIGGHASEHIQAITDMLELPHVSIQHIDLFAKNWSIINIFPSPIAYNKVLKSLVETKDWNNFTILYIRGHSLLRATELLRMGNSIDKRSVTIRELNGNDYRDVLIDAKKNGCVNFLVDCPARNLEQLLQHAQQVGLMAEEHSYLFVSPDLFTLDLERYRYSGVNITGFRIIDPAANEDLWKFTIQFNTETVQNLEPVQIKTEVLLIHDAVVVFNESLKKVNVTSTQLSCDNYDSWKYGSTLINFMRTNRVKGLTRSLIFDGFGQRNEVIFDLLELTSSGNQTIGHWIDDKLKIERPFIPDAQIGEESILKNKTLRVLIAPTAPYGYVKNWHTALEGNDRYEGFAVDLIQKLSDALGFNYEFILEENYGRKDPVTHKWGGMIYQLITEKADLAICDLSITAERQSVIDFSQPFMTLGIGILYKRPSKEPPEMFSFMAVFSKEVWYYMMLIQMGLGVIMIFVGRISHKEWQNPVPCIEQPEELSNQFSFANALWLIIGSVMQQGSEIAPIALAPRMITSVWWFFTMVMVASYVGILVAFLTVQKGSMPFQSLESLYEHKSISYGAKENGSTHSFFMDSPKTLHKKMYARMKEQGWLVPQNDIGVAKAETEPYAFFMESTSIEYTTERHCDLMQVGDLLDSKTYGIGMKKKSPYKRYIDDALLILKEKGEIQKLKDIWWKEKRGGGNCGQNSDEEEPQLEMKNMVGAFVVLGVGSVFGLFISILDMLWGVFKRSVKYRTTFKFELIEELKFVIKFSGSVKPVNRVQKQEGSLENLAEVAEGKDEIRSLRPLVVASEAKWTPTFRPQSFTDLH

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

A0A075T6Z7   A0A3S2TNF9   A0A194RQZ4   A0A0N0P9X7   A0A2H1X2N2   A0A212F4X3   + More
A0A2H1W0I2   A0A2A4J956   A0A0V0J167   A0A2A4J8S4   A0A1S4F217   Q17HZ0   A0A182IWS9   A0A0M3SBL8   A0A1Q3G542   A0A1Q3G4Z8   A0A075T675   A0A2J7QQF6   A0A084WPK2   A0A2J7QQG5   J9JWC6   Q7QCT5   A0A1B6DVP7   A0A1S4G9X1   A0A2H1VML2   Q5TUR9   A0A067QJY2   A0A182P839   A0A182RJ10   A0A182MGS7   A0A182FK05   A0A182RIF0   A0A2J7QQF4   A0A182VF89   A0A1Q3FV55   A0A1Q3FVD5   A0A2S2Q418   A0A336M1P8   A0A182V8U1   A0A182VVA4   A0A182N793   E0VYS5   A0A336M7Y1   A0A182QKT0   A0A182I9N1   A0A182X5A4   A0A195D3G4   A0A2H8TH02   A0A182K4K3   A0A182W0P2   F5HKL2   A0A154NX52   A0A182YEZ7   A0A182TY63   T1H862   H9JPN1   A0A182TZ79   A0A1B6CLB4   A0A182H5J6   A0A336KBS6   A0A088ACV7   E2A5C0   A0A336MCA3   A0A2A3EUX6   A0A182PQM6   A0A1L8DJQ6   A0A182LGK9   A0A1P8P1L6   A0A0L7QPK6   A0A182HTL3   A0A0K8VI05   A0A1L8DJE4   A0A182KC58   B4KBF2   A0A158NJ04   A0A195BK10   A0A0G2UKD8   B4MB75   A0A0B4KHJ0   B4PQ90   A0A310SWC4   A0A1L8DJG9   A0A0P8XYN3   A0A2W1BQI7   A0A1W4WXN9   A0A1B6J4X8   A0A140CQD2   A0A0A1XKL4   A0A3B0K4X3   I5ANT2   W8BL80   A0A1B6ELT0   A0A034VCG6   Q0KI38   A0A1W4VA05   A0A0L0BXX8   B3M356   A0A0M4JB15   A0A0Q9WBQ7  

Pubmed

25027790    28756777    26354079    22118469    27006164    17510324    + More
26265180    24438588    12364791    24845553    20566863    25244985    19121390    26483478    20798317    20966253    17994087    21347285    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    26752702    25830018    15632085    24495485    25348373    26108605   

EMBL

KF768735    KZ150075    AIG51929.1    PZC73974.1    RSAL01000042    RVE50838.1    + More
KQ459833    KPJ19819.1    KQ459037    KPJ04253.1    ODYU01012992    SOQ59581.1    AGBW02010300    OWR48772.1    ODYU01005554    SOQ46513.1    NWSH01002576    PCG67933.1    GDKB01000031    JAP38465.1    PCG67934.1    CH477244    EAT46286.1    KP843215    ALD51352.1    GFDL01000159    JAV34886.1    GFDL01000165    JAV34880.1    KF768731    AIG51925.1    NEVH01012087    PNF30819.1    ATLV01025092    KE525369    KFB52146.1    PNF30817.1    ABLF02032802    ABLF02032813    ABLF02032814    ABLF02032817    AAAB01008859    EAA07814.5    GEDC01007565    JAS29733.1    AAAB01008847    ODYU01003373    SOQ42048.1    EAL41148.4    KK853270    KDR09169.1    AXCM01007252    PNF30815.1    GFDL01003610    JAV31435.1    GFDL01003609    JAV31436.1    GGMS01003263    MBY72466.1    UFQS01000248    UFQT01000248    SSX02000.1    SSX22377.1    DS235846    EEB18531.1    UFQS01000674    UFQT01000674    SSX06068.1    SSX26424.1    AXCN02001179    APCN01001006    APCN01001007    KQ976885    KYN07450.1    GFXV01001516    MBW13321.1    EGK96764.1    KQ434777    KZC04142.1    ACPB03008552    BABH01015227    GEDC01023044    JAS14254.1    JXUM01111893    KQ565546    KXJ70888.1    SSX01999.1    SSX22376.1    GL436913    EFN71372.1    SSX06067.1    SSX26423.1    KZ288185    PBC34949.1    GFDF01007510    JAV06574.1    KU315187    APX56320.1    KQ414830    KOC60411.1    APCN01000567    GDHF01013780    JAI38534.1    GFDF01007512    JAV06572.1    CH933806    EDW16880.2    ADTU01017325    KQ976453    KYM85526.1    KP743677    AKI28993.1    CH940656    EDW58346.2    AE014297    AGB96168.1    CM000160    EDW96199.1    KQ759841    OAD62633.1    GFDF01007513    JAV06571.1    CH902617    KPU79727.1    PZC73973.1    GECU01013484    JAS94222.1    KR998374    AMH85993.1    GBXI01002423    JAD11869.1    OUUW01000013    SPP87752.1    CM000070    EIM52617.2    GAMC01012484    GAMC01012482    JAB94071.1    GECZ01030892    JAS38877.1    GAKP01019150    JAC39802.1    ABI31186.2    JRES01001168    KNC24883.1    EDV42456.2    KP843209    ALD51346.1    KRF78238.1   

Proteomes

UP000283053    UP000053240    UP000053268    UP000007151    UP000218220    UP000008820    + More
UP000075880    UP000235965    UP000030765    UP000007819    UP000007062    UP000027135    UP000075885    UP000075900    UP000075883    UP000069272    UP000075903    UP000075920    UP000075884    UP000009046    UP000075886    UP000075840    UP000076407    UP000078542    UP000075881    UP000076502    UP000076408    UP000075902    UP000015103    UP000005204    UP000069940    UP000249989    UP000005203    UP000000311    UP000242457    UP000075882    UP000053825    UP000009192    UP000005205    UP000078540    UP000008792    UP000000803    UP000002282    UP000007801    UP000192223    UP000268350    UP000001819    UP000192221    UP000037069   

PRIDE

H9JPN1    Q0KI38   

Pfam

PF01094   ANF_receptor        + More
PF00060   Lig_chan
PF10613   Lig_chan-Glu_bd
PF00497   SBP_bac_3

Interpro

IPR001828   ANF_lig-bd_rcpt        + More
IPR001508   Iono_rcpt_met       
IPR019594   Glu/Gly-bd       
IPR001320   Iontro_rcpt       
IPR028082   Peripla_BP_I       
IPR013320   ConA-like_dom_sf       
IPR001638   Solute-binding_3/MltF_N       

SUPFAM

SSF53822   SSF53822        + More
SSF49899   SSF49899       

ProteinModelPortal

A0A075T6Z7   A0A3S2TNF9   A0A194RQZ4   A0A0N0P9X7   A0A2H1X2N2   A0A212F4X3   + More
A0A2H1W0I2   A0A2A4J956   A0A0V0J167   A0A2A4J8S4   A0A1S4F217   Q17HZ0   A0A182IWS9   A0A0M3SBL8   A0A1Q3G542   A0A1Q3G4Z8   A0A075T675   A0A2J7QQF6   A0A084WPK2   A0A2J7QQG5   J9JWC6   Q7QCT5   A0A1B6DVP7   A0A1S4G9X1   A0A2H1VML2   Q5TUR9   A0A067QJY2   A0A182P839   A0A182RJ10   A0A182MGS7   A0A182FK05   A0A182RIF0   A0A2J7QQF4   A0A182VF89   A0A1Q3FV55   A0A1Q3FVD5   A0A2S2Q418   A0A336M1P8   A0A182V8U1   A0A182VVA4   A0A182N793   E0VYS5   A0A336M7Y1   A0A182QKT0   A0A182I9N1   A0A182X5A4   A0A195D3G4   A0A2H8TH02   A0A182K4K3   A0A182W0P2   F5HKL2   A0A154NX52   A0A182YEZ7   A0A182TY63   T1H862   H9JPN1   A0A182TZ79   A0A1B6CLB4   A0A182H5J6   A0A336KBS6   A0A088ACV7   E2A5C0   A0A336MCA3   A0A2A3EUX6   A0A182PQM6   A0A1L8DJQ6   A0A182LGK9   A0A1P8P1L6   A0A0L7QPK6   A0A182HTL3   A0A0K8VI05   A0A1L8DJE4   A0A182KC58   B4KBF2   A0A158NJ04   A0A195BK10   A0A0G2UKD8   B4MB75   A0A0B4KHJ0   B4PQ90   A0A310SWC4   A0A1L8DJG9   A0A0P8XYN3   A0A2W1BQI7   A0A1W4WXN9   A0A1B6J4X8   A0A140CQD2   A0A0A1XKL4   A0A3B0K4X3   I5ANT2   W8BL80   A0A1B6ELT0   A0A034VCG6   Q0KI38   A0A1W4VA05   A0A0L0BXX8   B3M356   A0A0M4JB15   A0A0Q9WBQ7  

PDB

5KUF     E-value=4.15027e-128,     Score=1176

KEGG

101743804    K05313 glutamate receptor, ionotropic, invertebrate | (RefSeq) glutamate receptor ionotropic, kainat

GO

GO:0016021   GO:0030054   GO:0045211   GO:0004970   GO:0006811   GO:1904315   GO:0008066   GO:0005886   GO:0050804   GO:0035249   GO:0060025   GO:0015277   GO:0016020   GO:0005234   GO:0005515   GO:0000287   GO:0016620   GO:0016787   GO:0003676   GO:0016491   GO:0015930  

Subcellular location

  

SignalP

Position:   1 - 19,         Likelihood:  0.983040

 

 

Length:

892

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

68.5885300000001

Exp number, first 60 AAs:

0.06064

Total prob of N-in:

0.00356

outside

1  -  524

TMhelix

525  -  544

inside

545  -  600

TMhelix

601  -  623

outside

624  -  788

TMhelix

789  -  811

inside

812  -  892

 

 

Pi

301.841522

Theta

200.22748

Tajima's D

1.66586

CLR

0.399469

CSRT

0.820058997050148

Interpretation

Uncertain