Gene

KWMTBOMO13754

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):8445065-8447196      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.543 Nuclear   Reliability : 2.163

CDS

ATGCCTCCTCTCGTACGCCCTTCAGGCCAACCACCGGCTTTCGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAATACGCGGACCCCGAACACACCGAGGCAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCACCCTCGGACGCGTTACCCCCCATTACCTCTGACGAAGTTAGAGAAGTAATAGACAACCTTCAACCTAAGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGTTAAAACTCTTACCAGTCCAACTGATAACAATGTTGGCTACCATCTTAAATGCTGCTATGACGCACTGCATCTTTCCGGCGGTATGGAAAGAAGCAGACGTTATCGGTATACACAAGCCGGGCAAACCGAATAATGAAACCGCTAGTTACCGACCGATTAGTCTCCTCCCAGCGATAGGCAAAATTTACGAACGGCTCCTTCGGAAACGCCTCTGGGACTTCGTTACCGCGAATAAAATTCTAATAGACGAGCAGTTTGGATTCCGCGCCAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCTTAATAGGGCTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGATGTAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATCTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCATCTGACTGCCGGAGTCCCGCAAGGCTCCGCACTCTCCCCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGTTGCTCCATCGGCGACTCCAGACCGCAGTAACCACCATGGGACAGTGGTTCCGGAAGTGGCGAATAGACATTAACCCCACGAAAAGCACAGCGGTGCTATTCAAAAGGGGTCGCCCTCCGAATACCACTTCGAGCACCCCACTCCCCAGTAGGCGCGTAAACACCTCCGCCGTTAGCCCCATCACTCTCTTTGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATACCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCACGTAAAAACGGTACGCGATCGCGCCGCGTTTATACTAGGACGACTCTACCCAATGCTTTGTAGACGAAGCAAACTGTCCCTCCGTAACAAGGTAACCCTCTACAAAACTTGCATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACGCGGCCCGCACCAACTTGAAACCCCTTCAGGTAATACAATCCCGATTCTGCAGGATAGCCGTCGGAGCACCATGGTTCCAGAGGAACGTGGACCTCCACGATGACCTGGAGCTCGACCCCGTCAGTAAGTATCTACAGTCGGCATCGCTGCGCCACTTTGAGAAGGCGGCACGACATGAGAACCCTCTTGTCGTGGCCGCCGGAAACTACATACCCGATCCTGTAGACCGTTTGGTAAACCGTCGACGTCGCCCAAAGCACGTCATCACGGATCCTCCTGATCCACTAACGGTGCTTTTAGGCAATACAAGCACCGGTCACCGTCCTCGCCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAATTAA

Protein

MPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQYADPEHTEAVDREVERRASLPPSDALPPITSDEVREVIDNLQPKKAPGSDGIRNRALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQTAVTTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTSSTPLPSRRVNTSAVSPITLFDQPIPWAPKVKYLGVTLDRGMTFRPHVKTVRDRAAFILGRLYPMLCRRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKPLQVIQSRFCRIAVGAPWFQRNVDLHDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRRPKHVITDPPDPLTVLLGNTSTGHRPRRTRRLRRRARRAN

Uniprot

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   A0A2S2PR14   V5GNJ2   X1WMU5   J9KKL3   X1WWC4   X1WLB2   X1WXU3   A0A087U2S8   A0A224XF24   A0A2S2PH29   A0A2S2PX53   A0A023EZE6   A0A1Y1M7E9   A0A2S2Q823   A0A2S2QJM7   A0A2S2PPK8   A0A023F6S4   A0A2S2QTZ8   A0A3N5Z7I3   A0A023EYS8   A0A2H8U0H5   A0A2S2Q383   A0A2S2NGV8   A0A2J7R7D0   A0A1Y1LKN6   A0A2J7R579   A0A2J7QPI2   A0A0J7KBP6   A0A224X6U5   A0A2J7R4B1   A0A2S2QEE0   A0A182GA28   A0A2S2RAN7   A0A2S2N814   A0A2H8TWD9   A0A2A4K8E7   Q07995   A0A2J7R8R8   A0A2M4BEF4   A0A2M4BEZ9   A0A069DZC5   A0A069DW01   A0A0A9YJ00   A0A2J7RIW7   A0A0A9YU04   A0A224XI99   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7Q059   A0A2J7PDM0   A0A2J7RM10   A0A2J7PMP6   J9LC21   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A2J7QUJ9   A0A2S2NJB5   A0A087T1W0   A0A2J7RB54   A0A2J7PVX3   A0A2M4BD67   A0A2J7PEB1   A0A2S2NPG3   A0A2J7PMP9   A0A2J7RPU2   X1XGU0   O76197   X1WZH0   A0A023F7D1   A0A0A9YSX4   A0A2M4BDV6   A0A2P8Z520   A0A2J7RS77   A0A2H8TES1   A0A224X6S1   A0A2A4K918   A0A0C9RJA4   J9KCZ4   X1WN18   A0A023F754   A0A2J7PVE7   A0A2J7Q0Q6   A0A2J7PU96   A0A2J7RL12   J9LC15  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    25474469    30086797    26483478    8387152    26334808    25401762    8934517    29403074   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    GALX01005299    JAB63167.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    ABLF02042518    ABLF02057746    ABLF02008933    KK117880    KFM71667.1    GFTR01008038    JAW08388.1    GGMR01016114    MBY28733.1    GGMS01000737    MBY69940.1    GBBI01004571    JAC14141.1    GEZM01038405    JAV81653.1    GGMS01004685    MBY73888.1    GGMS01008766    MBY77969.1    GGMR01018716    MBY31335.1    GBBI01001646    JAC17066.1    GGMS01012005    MBY81208.1    RPOV01000134    RPJ78669.1    GBBI01004395    JAC14317.1    GFXV01007093    MBW18898.1    GGMS01002992    MBY72195.1    GGMR01003407    MBY16026.1    NEVH01006736    PNF36716.1    GEZM01053022    JAV74219.1    NEVH01007393    PNF35987.1    NEVH01012089    PNF30491.1    LBMM01010106    KMQ87671.1    GFTR01008251    JAW08175.1    NEVH01007578    PNF35646.1    GGMS01006359    MBY75562.1    JXUM01155316    KQ572171    KXJ68070.1    GGMS01017914    MBY87117.1    GGMR01000676    MBY13295.1    GFXV01006424    MBW18229.1    NWSH01000032    PCG80497.1    S59870    AAB26437.2    NEVH01006721    PNF37225.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01003017    PNF40781.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GFTR01008256    JAW08170.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01020071    PNF21969.1    NEVH01026386    PNF14434.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    NEVH01010546    PNF32261.1    GGMR01004661    MBY17280.1    KK113014    KFM59099.1    NEVH01005938    PNF38077.1    NEVH01020940    PNF20481.1    GGFJ01001858    MBW50999.1    NEVH01026106    PNF14658.1    GGMR01006408    MBY19027.1    NEVH01023961    PNF17613.1    NEVH01001355    PNF42855.1    ABLF02055645    AF012049    AAC24972.1    ABLF02034467    GBBI01001570    JAC17142.1    GBHO01008295    JAG35309.1    GGFJ01001857    MBW50998.1    PYGN01000192    PSN51582.1    NEVH01000280    PNF43672.1    GFXV01000774    MBW12579.1    GFTR01008271    JAW08155.1    PCG80496.1    GBYB01008290    JAG78057.1    ABLF02008463    ABLF02021177    ABLF02027367    ABLF02066338    GBBI01001642    JAC17070.1    NEVH01020963    PNF20308.1    NEVH01019964    PNF22161.1    NEVH01021205    PNF19912.1    NEVH01002704    PNF41489.1    ABLF02020655    ABLF02039168    ABLF02061060   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000036403    + More
UP000069940    UP000249989    UP000218220    UP000245037   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    K9N5J5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   A0A2S2PR14   V5GNJ2   X1WMU5   J9KKL3   X1WWC4   X1WLB2   X1WXU3   A0A087U2S8   A0A224XF24   A0A2S2PH29   A0A2S2PX53   A0A023EZE6   A0A1Y1M7E9   A0A2S2Q823   A0A2S2QJM7   A0A2S2PPK8   A0A023F6S4   A0A2S2QTZ8   A0A3N5Z7I3   A0A023EYS8   A0A2H8U0H5   A0A2S2Q383   A0A2S2NGV8   A0A2J7R7D0   A0A1Y1LKN6   A0A2J7R579   A0A2J7QPI2   A0A0J7KBP6   A0A224X6U5   A0A2J7R4B1   A0A2S2QEE0   A0A182GA28   A0A2S2RAN7   A0A2S2N814   A0A2H8TWD9   A0A2A4K8E7   Q07995   A0A2J7R8R8   A0A2M4BEF4   A0A2M4BEZ9   A0A069DZC5   A0A069DW01   A0A0A9YJ00   A0A2J7RIW7   A0A0A9YU04   A0A224XI99   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7Q059   A0A2J7PDM0   A0A2J7RM10   A0A2J7PMP6   J9LC21   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A2J7QUJ9   A0A2S2NJB5   A0A087T1W0   A0A2J7RB54   A0A2J7PVX3   A0A2M4BD67   A0A2J7PEB1   A0A2S2NPG3   A0A2J7PMP9   A0A2J7RPU2   X1XGU0   O76197   X1WZH0   A0A023F7D1   A0A0A9YSX4   A0A2M4BDV6   A0A2P8Z520   A0A2J7RS77   A0A2H8TES1   A0A224X6S1   A0A2A4K918   A0A0C9RJA4   J9KCZ4   X1WN18   A0A023F754   A0A2J7PVE7   A0A2J7Q0Q6   A0A2J7PU96   A0A2J7RL12   J9LC15  

PDB

6AR3     E-value=0.0108134,     Score=93

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

579

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.15115

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03235

outside

1  -  579

 

 

Pi

37.880039

Theta

44.413048

Tajima's D

-0.456754

CLR

0

CSRT

0.253437328133593

Interpretation

Uncertain