Pre Gene Modal
BGIBMGA011493
Annotation
PREDICTED:_protein_farnesyltransferase/geranylgeranyltransferase_type-1_subunit_alpha_[Bombyx_mori]
Location in the cell
Extracellular Reliability : 2.862
Sequence
CDS
ATGATTCTAAAAATTGTACTTTTGTGTGGTGCCGTGGCGGCTGTACACGGTGGAGGTTTGATCGCTCCGGCGTACAGCGCACCATACAGTTATGGCGCTTGGAACCCGTACAGCTCATATCCGGCTCAACCCGCCTTGGCCTCTCAACACTCGAACACGTCACCATTCAACCTCGGACAGATTTCAACATATAGTAAATCAGTAGATACACCTTTCTCGAGTGTGCGTAAGGCTGACATTCGTGTGAGTAATCCCGGTGTAGCAGTGGCTCCTGCTTACAGTAGCTTTGCGGCACCTTATGTGTCCCACGTTGGAGTTGCGGCACCTGTTGCTAAAGTGGCTACGACAGGGGGTCTCCTAGGGGTAGCATATTCAGCAGCTCCAACTGTCTCCCATATGACATATACCAACGGGCTTGGCTTTGCATACGGCTGTGTGGACACCATGTCTGATTGCGGGGACAGTGATGTTTTATGGATACCATACAAAGAAAGGCCGGAGTGGAGTGATGTTACGCCTGTTCCAGAGGATGACGGTCCCAACCCAGTGGTAGTTATAGCTCATTCGGAAAAATTTGAGGATGTGTATGATTACTTCCGAGCAGTTTTACAAAGTAATGAAAAGTCAGAACGAGTACTTCATCTTACCAAGGATGCTTTGGAATTAAATCCAGCTAACTACACTGTTTGGCAATACAGGAGAGATTTGCTGAAACATTTGAACACTGACTTGAGGACAGAATTAGATTATGTTGAAGCGGTTATAAAGAATTCACCAAAGAATTATCAGGTATGGCACCACCGTAGGGTTTTGGTAGAATGGCTGCAAGATCCCACAATGGAACTTGAATTGACAGGCGATGCACTTCTACAAGATCCAAAGAACTATCATGCTTGGCAACATAGGCAATGGGCTATCAAAACATTTGGGCTTTACGAAAAGGAATTAGATTTCGTCGACAATCTGATCACGGACGACGTTCGTAATAATTCAGCGTGGAATCAGCGATACTTTGTAGTGAACAATAATTTAGGCTGGTCGGATTTGATTTGTCAGCAAGAAGTGTGTTACACTTTGGAAAAAATTAATTTCGTTAAAAATAACGAGAGCGCGTGGAATTATTTGAGAGGGCTGCTTATACATGATAAGCGTGGTCTTAGTGGAAACGCTGTTATCACATCGTTTTGCGAAGAATTGTACAAGAATAAGTGTCGGTCGCCTTTCCTGTTAGCCTTCATCATAGATGTATGCGAGGATGCTATTAAAAAAAAAGATACAAACTGCTTCCACAATGCAGACAGAGCTGTGGAGTTATGTCAGGCGTTGGCCACTAGATACGACAAAATTAGAAGTAAATATTGGAATTATTTATGTGAAAGATACAAGAAATACCAAAGTGAACAGCTTAGTAATGACAATAAAACAAACGATCTAATAATTGATGAATAA
Protein
MILKIVLLCGAVAAVHGGGLIAPAYSAPYSYGAWNPYSSYPAQPALASQHSNTSPFNLGQISTYSKSVDTPFSSVRKADIRVSNPGVAVAPAYSSFAAPYVSHVGVAAPVAKVATTGGLLGVAYSAAPTVSHMTYTNGLGFAYGCVDTMSDCGDSDVLWIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTNDLIIDE
Summary
Uniprot
Proteomes
Pfam
PF01239 PPTA
ProteinModelPortal
PDB
2IEJ
E-value=5.10941e-95,
Score=888
Ontologies
GO
Topology
SignalP
Position: 1 - 17,
Likelihood: 0.967650
Length:
482
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.83095
Exp number, first 60 AAs:
17.57056
Total prob of N-in:
0.78114
POSSIBLE N-term signal
sequence
inside
1 - 4
TMhelix
5 - 27
outside
28 - 482
Population Genetic Test Statistics
Pi
55.130177
Theta
189.508359
Tajima's D
-1.635352
CLR
2676.570165
CSRT
0.0460476976151192
Interpretation
Possibly Positive selection
