Gene

KWMTBOMO13743

Pre Gene Modal

BGIBMGA014468

Annotation

non-LTR_retrotransposon_CATS_[Danaus_plexippus]

Location

Bomo_Chr23(-):8157418-8159174      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.666

CDS

ATGGCAATCCATCTACCATCTGGATGCCACATGCAGGCCTACGCAGACGATGTGGTACTCGTGGTCACCGCCGAAAATGTCAATCGCCTAGAGGAGCTCACCGACACGGTTCTCCAACAGATAGTGAATTGGGGAAAAAGCGTCAAGCTCGAATTCGGGGCCTTCAAAACACAACTGATCGCCTTCACCCCCAAGGCCAGAACTCTTAGGGTGGAGATGGACGGTCAAATCTTAAAAACCTGTAAGGAGATCAAGCTCCTCGGAATAATTTTGGACGAAAAGCTGCTCTTTGGCCGCCATGTACAGTACGTCCTGGGAAAAGCCTCGCGAATATTCAACAAACTGTGCTTGTACTCCCGACCAACCTGGGGTGCTCATCCCGAGAACGTGCGCACCATCTATCTCCGAGTCATCGAGCCAATCGTCACCTACGCTGCCGGGGTGTGGGGACACATAGTAAACAAGCGCTACATCAAAAAATCTTTGATGAGCATGCAGCGTGGTTTTGCCCTAAAAGCCATCAGAGGATTCCGCACTATTTCAACCTCCGCTGCTCTGGCTCTCGCACAATTCACCCCTCTAGACCTAAAAATCCGAGAAGTACACCAAATCGAAAAAGTCAGGCTCACTGGGAAAACTGAATTCCTTCCCAATGACATTTCTTATGAGAAACCTGTCCCCGTCAAGGACCTCCTACATCCCGCTAGAAGGCCGACTATCAAACCCATACCCTCCTCTGAACACCGAATTAACTCCGAAATGACGGACAGTACTCTGGTCACTCGCGTATTCACTGACGGAAGTAAGCAGGACGATGGATCAGTTGGAGCCGCATTCGTGCTTTACAGACCCGGCGACACTGAAACATCCGTAACAAAAAAGTACAAATTACACAGTAGCTGCACAGTCTTCCAGGCAGAGCTGTACGCCATCTGGAAAGCCTGTCAGTGGATTGTAAGCGAAAATCATCCCCACACATACATCTTCACCGATTCTCTCTCATCAATATACGCGATAAATAACAGAAGCAACACACACCCCATCATAGTGAACATACACAAACTCATACACGCTAACCACACTACACACAAAATTTACATAGATTGGGTAAAGGGACACTCGGGTGTCATAGGAAACGAGGAAGCCGATGCGGCTGCCAACAGCGGCGCACGCATGCACAAGGCCCCCGACTACTCGCAGTTCTCAATATCCTACGTGAAACACAAGATTCGCACAGAACACCACGCCATCTGGCAAGCCAGATACGAAAGCTCCCCGCAGGGCTCACACACAAAAACACTACTACCAAAACTGAACGACATCAAAGAACTTAACAAATGCACACAAACAAACTTTCAGCATACACAAATACTCACAGGCCATGGATATCACAAGACATACTTACATCGCTTCAAAATAGCACCAGATGACACCTGCCCCTGCGACGGCACCTCCAGCCAAACTGTAGAACACCTCCTTAAAAACTGCCAAGCGTTCGCTGCGAAAAGGCACAGTCACGAAGAAACGTGCCACGCAGTACAGGTGCCACCATATAATTTACCTGAAATGTTAAAAAAGAAAGCTGCAATCAACTCTTTCACCTCGTTTTGCCAAACAATAATCAACAACATCAAGAAAATAAATGAAAACAATTAG

Protein

MAIHLPSGCHMQAYADDVVLVVTAENVNRLEELTDTVLQQIVNWGKSVKLEFGAFKTQLIAFTPKARTLRVEMDGQILKTCKEIKLLGIILDEKLLFGRHVQYVLGKASRIFNKLCLYSRPTWGAHPENVRTIYLRVIEPIVTYAAGVWGHIVNKRYIKKSLMSMQRGFALKAIRGFRTISTSAALALAQFTPLDLKIREVHQIEKVRLTGKTEFLPNDISYEKPVPVKDLLHPARRPTIKPIPSSEHRINSEMTDSTLVTRVFTDGSKQDDGSVGAAFVLYRPGDTETSVTKKYKLHSSCTVFQAELYAIWKACQWIVSENHPHTYIFTDSLSSIYAINNRSNTHPIIVNIHKLIHANHTTHKIYIDWVKGHSGVIGNEEADAAANSGARMHKAPDYSQFSISYVKHKIRTEHHAIWQARYESSPQGSHTKTLLPKLNDIKELNKCTQTNFQHTQILTGHGYHKTYLHRFKIAPDDTCPCDGTSSQTVEHLLKNCQAFAAKRHSHEETCHAVQVPPYNLPEMLKKKAAINSFTSFCQTIINNIKKINENN

Uniprot

A0A3S2NBZ7   Q9BLI5   Q3V5Y4   Q93139   A0A3S3P0A9   A0A2A4JF48   + More
A0A1W7R9Y4   A0A2W1BN41   A0A2L2YM05   A0A224X5M4   A0A087TAD8   A0A147BK23   A0A1Y3BBS5   A0A0K1IK29   A0A087TJZ1   A0A0K1IK14   A0A087UHT1   A0A087TI44   A0A0K8TSF0   A0A087USZ4   A0A131XRZ7   O44317   L7MBK1   A0A1B6G0A1   A0A142LX31   A0A023EX80   O44315   A0A087TUG6   A0A131XRY9   A0A131Y6M1   A0A131XWC0   O46185   U5EVA2   U5EV73   A0A2E0U2U9   U5EW32   A0A224X5X2   A0A1W4XBW8   A0A224X6B3   A0A142LX39   A0A0G2LA86   U5EG91   U5ERW4   A0A2R5L945   A0A023EWA3   A0A142LX33   K7JA12   A0A0K8TR49   A0A0K8TRR6   A0A3S2KYU3   K7JB14   A0A0J7KB01   A0A2P2I3J0   A0A1B6ETM1   O18558   A0A0K8TR39   A0A142LX24   U5EV16   U5ERR6   C5KEL8   U5EFQ1   X1WW00   J9MAR8   A0A2S2QV27   A0A0A2KN74   A0A1M2W257   A0A224X696   A0A074RHS1   X8JC12   V9H1I9   A0A226DPQ5   A0A2S2Q1Q6   M5CE34   A0A0G4PXY0   U5EPW8   A0A1S4EP80   A0A1Q5UHD9  

Pubmed

11319268    7623845    15247245    28756777    26561354    29652888    + More
26369729    25576852    25527032    25474469    9364772    29337314    23594743    24945155    20075255    25338147    25359908    1665124    23280342    24407037   

EMBL

RSAL01000249    RVE43511.1    AB046668    BAB21511.1    AB211537    BAE44464.1    + More
D38414    BAA07467.1    NCKU01007943    RWS02258.1    NWSH01001820    PCG70022.1    GFAH01000444    JAV47945.1    KZ149985    PZC75691.1    IAAA01038678    LAA08500.1    GFTR01008639    JAW07787.1    KK114278    KFM62077.1    GEGO01004274    JAR91130.1    MUJZ01028333    OTF78340.1    KP771711    AKU04648.1    KK115566    KFM65430.1    KP771712    AKU04650.1    KK119855    KFM76920.1    KK115320    KFM64783.1    GDAI01000743    JAI16860.1    KK121445    KFM80483.1    GEFM01006379    JAP69417.1    AF015813    AAB94039.1    GACK01003634    JAA61400.1    GECZ01013919    JAS55850.1    KU543676    AMS38357.1    GBBI01004920    JAC13792.1    AF015489    AAB94030.1    KK116791    KFM68755.1    GEFM01006389    JAP69407.1    GEFM01002205    JAP73591.1    GEFM01005915    JAP69881.1    U73803    AAB92394.1    GANO01003496    JAB56375.1    GANO01003537    JAB56334.1    PABS01000003    MAT33547.1    GANO01003141    JAB56730.1    GFTR01008541    JAW07885.1    GFTR01008411    JAW08015.1    KU543680    AMS38365.1    CR848788    GANO01003539    JAB56332.1    GANO01003538    JAB56333.1    GGLE01001887    MBY06013.1    GAPW01000103    JAC13495.1    KU543677    AMS38359.1    AAZX01016607    AAZX01023407    GDAI01000751    JAI16852.1    GDAI01000752    JAI16851.1    RSAL01000438    RVE41707.1    AAZX01002319    LBMM01010475    KMQ87436.1    IACF01002963    LAB68595.1    GECZ01028519    JAS41250.1    U87543    AAB65093.1    GDAI01000756    JAI16847.1    KU543672    AMS38350.1    GANO01003611    JAB56260.1    GANO01003612    JAB56259.1    GG672330    EER17156.1    GANO01003746    JAB56125.1    ABLF02060681    ABLF02064366    ABLF02030052    GGMS01012395    MBY81598.1    JQGA01001155    KGO69287.1    MNAD01000345    OJT13951.1    GFTR01008431    JAW07995.1    AZST01001167    KEP46314.1    JATN01000319    EUC61565.1    X59239    CAA41925.1    LNIX01000015    OXA46641.1    GGMS01001879    MBY71082.1    CAOJ01012627    LN679168    CCO34112.1    CEL62418.1    HG793200    CRL30999.1    GANO01003536    JAB56335.1    MNBE01000390    MNBE01000261    OKP10147.1    OKP11873.1   

Proteomes

UP000283053    UP000285301    UP000218220    UP000054359    UP000192223    UP000000437    + More
UP000002358    UP000036403    UP000007819    UP000030104    UP000184267    UP000027456    UP000030108    UP000198287    UP000059188    UP000053732    UP000079169    UP000186955   

PRIDE

Q9BLI5    Q3V5Y4    Q93139   

Pfam

PF00075   RNase_H        + More
PF14529   Exo_endo_phos_2
PF00078   RVT_1
PF16012   DUF4780
PF00098   zf-CCHC
PF13966   zf-RVT

Interpro

IPR036397   RNaseH_sf        + More
IPR002156   RNaseH_domain       
IPR012337   RNaseH-like_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR031961   DUF4780       
IPR004808   AP_endonuc_1       
IPR001878   Znf_CCHC       
IPR026960   RVT-Znf       

SUPFAM

SSF53098   SSF53098        + More
SSF56219   SSF56219       

Gene 3D

3.30.420.10     3.60.10.10    

ProteinModelPortal

A0A3S2NBZ7   Q9BLI5   Q3V5Y4   Q93139   A0A3S3P0A9   A0A2A4JF48   + More
A0A1W7R9Y4   A0A2W1BN41   A0A2L2YM05   A0A224X5M4   A0A087TAD8   A0A147BK23   A0A1Y3BBS5   A0A0K1IK29   A0A087TJZ1   A0A0K1IK14   A0A087UHT1   A0A087TI44   A0A0K8TSF0   A0A087USZ4   A0A131XRZ7   O44317   L7MBK1   A0A1B6G0A1   A0A142LX31   A0A023EX80   O44315   A0A087TUG6   A0A131XRY9   A0A131Y6M1   A0A131XWC0   O46185   U5EVA2   U5EV73   A0A2E0U2U9   U5EW32   A0A224X5X2   A0A1W4XBW8   A0A224X6B3   A0A142LX39   A0A0G2LA86   U5EG91   U5ERW4   A0A2R5L945   A0A023EWA3   A0A142LX33   K7JA12   A0A0K8TR49   A0A0K8TRR6   A0A3S2KYU3   K7JB14   A0A0J7KB01   A0A2P2I3J0   A0A1B6ETM1   O18558   A0A0K8TR39   A0A142LX24   U5EV16   U5ERR6   C5KEL8   U5EFQ1   X1WW00   J9MAR8   A0A2S2QV27   A0A0A2KN74   A0A1M2W257   A0A224X696   A0A074RHS1   X8JC12   V9H1I9   A0A226DPQ5   A0A2S2Q1Q6   M5CE34   A0A0G4PXY0   U5EPW8   A0A1S4EP80   A0A1Q5UHD9  

PDB

2QKK     E-value=5.76573e-05,     Score=112

KEGG

NA   

GO

GO:0016021   GO:0004523   GO:0003676   GO:0003964   GO:0008270   GO:0031625   GO:0005515   GO:0000287   GO:0016620   GO:0016787   GO:0016491   GO:0015930  

PANTHER

PTHR22748  

Length:

551

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.02183

Exp number, first 60 AAs:

0.00029

Total prob of N-in:

0.01258

outside

1  -  551

 

 

Pi

197.512959

Theta

169.476642

Tajima's D

0.346857

CLR

303.603018

CSRT

0.467776611169442

Interpretation

Uncertain