Gene

KWMTBOMO13736

Pre Gene Modal

BGIBMGA002202

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]

Location

Bomo_Chr23(-):7980303-7981994      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.825

CDS

ATGGCCGGAACTTTAATGTCTAGTGATAGTGACAGTGATCTTGAAGTGCTGGAGCAGCTTTCAGATTGGGATAATGAGGATACTGATGGAGACGAAGGTCCATCAGGATCACGAAGAAGCTATTGCCGTATTGATTATACTCAGTGCCTAACTGATGCTGAATTTACATTTAGATTTCGTCTTAACAAAGCTGCGGTACAATTACTTTTATCGGAAATAATGCCACATGTAAAAGTAACCTGCAATCGAAATCATGGAGTTGCACCACTTCACCAGCTACTCCTAACCCTCCGATTTTATGCATTGGGTACAATGCTAATTTCTGTAGCGGATTTCGTGGGCGTGTCAAAATCGACCGCCAGCAGAATAGTTCACGATATATCTGGAGCTATAGCCATACTGTACAATAAATACATTGTAATGCACCCTAATCATGTGGACAAGTTTTTTCAATATGGTCAATTCCCACGTGTCCTGGGTGCAATTGACTGCACTCACATACGGATACAATCTCCAAATCACACAATAGGCGAAGAGTTCAGAAACCGAAAAGGCTACTTTTCATTAAATGTTCAAGCAGTTTGTGATGCTGATTTGAAGTTTATGAATGTTGTAGCCCGGTGGCCTGGTTCTGCACATGATGCTACTATATTTAATAATTCTGTTTTAAGAGCTCAGTGTGAAGCTGGGACTTTTGGGAATCGCTGTGCTAGAAATGAACAAAAATATAATGATGCACATATTGCAACAAGAAACCTTATTGAAAGAACCTTCGGTGTATGGAAGCGACGTTTTCCAGTGATCTCATTATCTATGCGCTTATCACTAGAAAACATTCAGAAAGTTGTAATAGCTACAGCAGTTCTACACAACATCTGTAGAATTCATAACTTGCAAGAAACCCCAGCAGAGGTACAAATACCATTCCAAGCAATGGATGATGATGATCTTCAAACTATGGGAGTACAAGATAGCAGGGATAGAACAGAATTAATAGAAGCCTACTTCTCAACTCTGTAG

Protein

MAGTLMSSDSDSDLEVLEQLSDWDNEDTDGDEGPSGSRRSYCRIDYTQCLTDAEFTFRFRLNKAAVQLLLSEIMPHVKVTCNRNHGVAPLHQLLLTLRFYALGTMLISVADFVGVSKSTASRIVHDISGAIAILYNKYIVMHPNHVDKFFQYGQFPRVLGAIDCTHIRIQSPNHTIGEEFRNRKGYFSLNVQAVCDADLKFMNVVARWPGSAHDATIFNNSVLRAQCEAGTFGNRCARNEQKYNDAHIATRNLIERTFGVWKRRFPVISLSMRLSLENIQKVVIATAVLHNICRIHNLQETPAEVQIPFQAMDDDDLQTMGVQDSRDRTELIEAYFSTL

Uniprot

A0A3S2LMD2   A0A0L7L248   A0A2A4IXD7   A0A2H1VXT4   A0A0L7L4N7   H9JFA0   + More
A0A1Y1M7D0   A0A1Y1MBC4   J9KF22   A0A1I8NJZ2   J9L1W5   X1X0S1   J9KLH0   N6UD62   A0A3S2P3B6   A0A0L7LEJ9   J9M943   A0A0L7LMF9   A0A3S2LRZ4   A0A1Y1MC35   J9JTM0   J9KWE0   C4WUD0   J9JZ87   J9LL64   A0A2S2NS44   A0A1Y1MZ45   A0A3S2KYY9   J9M2S7   X1WZQ8   J9K8M3   A0A1Y1KLA7   X1XKK1   H9J5I1   C4WVD2   A0A2S2NKK2   A0A1Y1M620   J9JXP4   A0A1Y1MXP7   A0A2P8Z014   J9LXS6   J9LYS1   A0A0A9ZIH6   J9JM90   A0A1Y1KQW0   N6TYP6   A0A2R2MN13   X1WR39   A0A1B6KEC0   N6TYG1   X1XI09   J9M4Q3   N6TRS6   J9L523   A0A1S3JPJ3   J9KQN6   J9KK24   A0A0L7LT10   U4U2V2   J9LUG4   J9L1A7   A0A0J7K466   J9JJW2   A0A0A9YXL9   U4U597   D6WYB2   S4PD89   A0A1Y1KFZ4   A0A1Y1KRW4   A0A1Y1N6P0   D7EKQ7   A0A158NUI4   J9LUU4   J9LWR9   J9JZI3   J9KAY9   A0A146L3K0   A0A1Y1KVK5   H9JKZ1   A0A3Q0J0W5   A0A2R5LJM8   J9L0T4   G3NNV5   J9LCM8   G3Q0A3   G3NPN9  

Pubmed

26227816    19121390    28004739    25315136    23537049    29403074    + More
25401762    26823975    18362917    19820115    23622113    21347285   

EMBL

RSAL01000057    RVE49808.1    JTDY01003471    KOB69505.1    NWSH01005652    PCG64078.1    + More
ODYU01004776    SOQ45014.1    JTDY01002978    KOB70380.1    BABH01027007    GEZM01038551    JAV81614.1    GEZM01038550    JAV81615.1    ABLF02061340    ABLF02019815    ABLF02019816    ABLF02020738    ABLF02022234    ABLF02058482    APGK01040149    KB740975    ENN76582.1    RSAL01001934    RVE40628.1    JTDY01001465    KOB73799.1    ABLF02017542    JTDY01000543    KOB76728.1    RSAL01000314    RVE42625.1    GEZM01035464    GEZM01035462    JAV83213.1    ABLF02029655    ABLF02030019    ABLF02016012    ABLF02055237    ABLF02006541    ABLF02042859    AK341014    BAH71500.1    ABLF02036739    ABLF02019988    ABLF02066411    GGMR01007355    MBY19974.1    GEZM01017851    GEZM01017841    GEZM01017840    JAV90428.1    RSAL01000416    RVE41817.1    ABLF02011053    ABLF02008641    ABLF02011808    ABLF02006612    GEZM01080383    JAV62179.1    ABLF02020736    BABH01028201    AK341464    BAH71852.1    GGMR01005102    MBY17721.1    GEZM01039795    GEZM01039794    GEZM01039793    GEZM01039792    GEZM01039791    GEZM01039790    GEZM01039789    JAV81183.1    ABLF02008545    GEZM01017837    GEZM01017836    GEZM01017835    JAV90434.1    PYGN01000260    PSN49845.1    ABLF02003846    ABLF02012895    GBHO01000839    JAG42765.1    ABLF02016431    GEZM01076717    JAV63704.1    APGK01005289    KB736163    ENN83248.1    ABLF02063305    GEBQ01030196    JAT09781.1    APGK01006977    KB737050    ENN83098.1    ABLF02012281    ABLF02058185    ABLF02016385    APGK01006027    KB736544    ENN83189.1    ABLF02035722    ABLF02034876    ABLF02038239    JTDY01000151    KOB78582.1    KB631844    ERL86663.1    ABLF02024993    ABLF02024998    ABLF02025000    ABLF02008686    LBMM01014280    KMQ85248.1    ABLF02011428    GBHO01005857    GDHC01007230    JAG37747.1    JAQ11399.1    KB632043    ERL88242.1    KQ971356    EFA09128.1    GAIX01003761    JAA88799.1    GEZM01088054    JAV58326.1    GEZM01078171    GEZM01078169    GEZM01078168    GEZM01078162    GEZM01078161    GEZM01078158    GEZM01078157    GEZM01078155    GEZM01078153    GEZM01078152    GEZM01078149    GEZM01078144    GEZM01078140    GEZM01078137    JAV62920.1    GEZM01016480    JAV91267.1    DS497765    EFA11633.1    ADTU01026491    ABLF02007356    ABLF02033619    ABLF02007265    ABLF02015906    GDHC01016852    JAQ01777.1    GEZM01078173    GEZM01078172    GEZM01078170    GEZM01078167    GEZM01078166    GEZM01078160    GEZM01078150    GEZM01078147    GEZM01078145    GEZM01078139    GEZM01078138    GEZM01078136    GEZM01078135    GEZM01078134    JAV62907.1    BABH01011318    GGLE01005627    MBY09753.1    ABLF02003216    ABLF02010299   

Proteomes

UP000283053    UP000037510    UP000218220    UP000005204    UP000007819    UP000095301    + More
UP000019118    UP000245037    UP000085678    UP000030742    UP000036403    UP000007266    UP000005205    UP000079169    UP000007635   

PRIDE

H9JFA0    H9J5I1    H9JKZ1   

Pfam

PF13359   DDE_Tnp_4        + More
PF13843   DDE_Tnp_1_7
PF16087   DUF4817
PF05699   Dimer_Tnp_hAT

Interpro

IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       
IPR029526   PGBD       
IPR032135   DUF4817       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF53098   SSF53098       

ProteinModelPortal

A0A3S2LMD2   A0A0L7L248   A0A2A4IXD7   A0A2H1VXT4   A0A0L7L4N7   H9JFA0   + More
A0A1Y1M7D0   A0A1Y1MBC4   J9KF22   A0A1I8NJZ2   J9L1W5   X1X0S1   J9KLH0   N6UD62   A0A3S2P3B6   A0A0L7LEJ9   J9M943   A0A0L7LMF9   A0A3S2LRZ4   A0A1Y1MC35   J9JTM0   J9KWE0   C4WUD0   J9JZ87   J9LL64   A0A2S2NS44   A0A1Y1MZ45   A0A3S2KYY9   J9M2S7   X1WZQ8   J9K8M3   A0A1Y1KLA7   X1XKK1   H9J5I1   C4WVD2   A0A2S2NKK2   A0A1Y1M620   J9JXP4   A0A1Y1MXP7   A0A2P8Z014   J9LXS6   J9LYS1   A0A0A9ZIH6   J9JM90   A0A1Y1KQW0   N6TYP6   A0A2R2MN13   X1WR39   A0A1B6KEC0   N6TYG1   X1XI09   J9M4Q3   N6TRS6   J9L523   A0A1S3JPJ3   J9KQN6   J9KK24   A0A0L7LT10   U4U2V2   J9LUG4   J9L1A7   A0A0J7K466   J9JJW2   A0A0A9YXL9   U4U597   D6WYB2   S4PD89   A0A1Y1KFZ4   A0A1Y1KRW4   A0A1Y1N6P0   D7EKQ7   A0A158NUI4   J9LUU4   J9LWR9   J9JZI3   J9KAY9   A0A146L3K0   A0A1Y1KVK5   H9JKZ1   A0A3Q0J0W5   A0A2R5LJM8   J9L0T4   G3NNV5   J9LCM8   G3Q0A3   G3NPN9  

KEGG

105842545    K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) putative nuclease HARBI1

GO

GO:0016021   GO:0046983  

Length:

339

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.32695

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.04031

outside

1  -  339

 

 

Pi

124.740081

Theta

165.361234

Tajima's D

-0.892208

CLR

0

CSRT

0.164591770411479

Interpretation

Uncertain