SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13718
Annotation
PREDICTED:_uncharacterized_protein_LOC106134874_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.969 Nuclear   Reliability : 1.748
 

Sequence

CDS
ATGCCCTTGTGGTTGGGGGCGCGAGCGCTAAGTATGCGAGTGTACTGTCTGACAACGGTTCTCGCGGCGCTGGCTCTGCGCTCAGCGGCTGAGCCTCCTCGCCGTTACCCCACAGAGTGGCGTGCAGACCGTGACCTGACCCGATCTCGACCTCTACAAGAAATATTCGACCCGGAACATGCCTCTCCCGACACAGATGTTGCATACGCTTCTCGTCAGCCACCACCTTTACCTCCAGGCGCCTTACATAAAGAACGACGACGGGCACGTAACAACAAAAGGGCTCCACACCAAATTCCATCTGAAATTGCGAACCAAATGATGCTAAGAGCTTCGCGCTCTAGTCGACCTTATGATGTACCACAAATAGGTAAGTAA
Protein
MPLWLGARALSMRVYCLTTVLAALALRSAAEPPRRYPTEWRADRDLTRSRPLQEIFDPEHASPDTDVAYASRQPPPLPPGALHKERRRARNNKRAPHQIPSEIANQMMLRASRSSRPYDVPQIGK

Summary

Interpro
IPR023415   LDLR_class-A_CS        + More
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
SUPFAM
SSF57424   SSF57424       
Gene 3D

Ontologies

GO

Topology

SignalP
Position:   1 - 30,         Likelihood:  0.573827
 
 
Length:
125
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.93253
Exp number, first 60 AAs:
6.93253
Total prob of N-in:
0.06352
outside
1  -  125
 
 

Population Genetic Test Statistics

Pi
198.151096
Theta
173.75122
Tajima's D
0.794192
CLR
0.349063
CSRT
0.60421978901055
Interpretation
Uncertain
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