SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13710  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011012
Annotation
PREDICTED:_organic_cation_transporter_protein_isoform_X2_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.851
 

Sequence

CDS
ATGACGGCTGGTATGCATATGCTGTCTTTAGTGACAGTGGCCGCAGTTCCGGATCACAGATGCTTCCTACACGGAATTGACAGCTACAATGCCACAAATTCATGGAACTCTTCTTTGGTAATGGCAGCTATTCCAGTGAATGAAAATGACAAATTTGATTCGTGCAGAATGTACACAAGGAACCACACATCTACGGCGGAATGTGAATCTTGGGTTTACAACACGCAGTACTTTTCTTCTTCTAGGGGTATTGAATGGAATTTTGTATGCAATCAGCGTTGGATGGGCGCTATCGCTCAAACCGTTTACATGTTTGGCGTTGTGGGTGGCTCTCTCATATTTGGTCGAATATCTGATAAATATGGAAGGAAAACTGCCTTTGTATGGTCTGGAGTTATGCAATTGCTGCTCGGAGTTTTGGTTGCATTAACAAATGAATACTACTCTTTCTTAGTTGTCAGATTTATATATGGAATATTTGGATCGGGAGCATATATTACTGGATTCGTATTAACGATGGAACTCGTCGGACCAAGCAAACGAACAATTTGCGGGGTTACATTTCAAGTAATGTTCGCAATCGGGATTATGTTAGTTCCTGCTTGGGGATATTTAATTGATAATAGATTTTACTTGCAAATACTGTATGGTCTGCACGCAGCTCTGTTACTTCCGCACTGGTTTATAATGGACGAGTCCCCAAGGTGGCTTTGGTCACAAGGCCGTGCTCGAGAATCGGTCGCAATAATTGAAAAAGCGTTGAAGATGAACGGTATAACTGAGAACATAGATACGTCTTCTTTAATTTCACAATGTAAAGCGACAAATGCAAAATATTCAGATGAACAATCTGCGGGCACGAATGATCTTTTCAAGACTCCAAGAATGTTGAAGAAAACTCTTATAATTTGCGGATGCTGGTTCACAAACTCCGTTGTCTATTATGGGATTTCATTGAACGCTGGAAAATTAAATGGAAACCCATATTTTCTTATGTTCTTAATGGGTATCGTAGAGTTACCTAGCTATGTAATTATAACTTACTTCTTGGACCGGGTTGGACACAGAGCTCTTATTAGTACAATGATGTTGCTAGGTGGAATAGCATGTTTGGTTATATTCTTTCTTCCTCATGGATCTATAACTACCACTGGAATGGTAATGGTAGGAAAGCTTTTCATTTCAGGTTCATTCTCTATTATTTACAAGTATTCTGCAGAATTATTCCCGACCGTTGTTCGTAGTTCTGGAGTTGGTCTGGGCAGTATGTGCGCCAGTGTGTCCGGAGCTTTAACCCCCCTGATAAATTTATTAGATACCCTAAATCCCAAGATTCCGACTATTTTATTCGGATTTTTGGCTTTATTCTCTGGGTTCTCTACTTTCTTCTTACCGGAAACCATTGGCCGCCACTTACCCCAATCTCTGGAAGATGGAGAAAAATTCGGAATCGGCGACAATTGTTTCACCAACTGCAGTGGTCAGCCACTGACTGATAGTATTCCCGATATTCCTGAAACCATGGTTCCTCTAGATGAAAACAAGAAAACAAAGGAATAA
Protein
MTAGMHMLSLVTVAAVPDHRCFLHGIDSYNATNSWNSSLVMAAIPVNENDKFDSCRMYTRNHTSTAECESWVYNTQYFSSSRGIEWNFVCNQRWMGAIAQTVYMFGVVGGSLIFGRISDKYGRKTAFVWSGVMQLLLGVLVALTNEYYSFLVVRFIYGIFGSGAYITGFVLTMELVGPSKRTICGVTFQVMFAIGIMLVPAWGYLIDNRFYLQILYGLHAALLLPHWFIMDESPRWLWSQGRARESVAIIEKALKMNGITENIDTSSLISQCKATNAKYSDEQSAGTNDLFKTPRMLKKTLIICGCWFTNSVVYYGISLNAGKLNGNPYFLMFLMGIVELPSYVIITYFLDRVGHRALISTMMLLGGIACLVIFFLPHGSITTTGMVMVGKLFISGSFSIIYKYSAELFPTVVRSSGVGLGSMCASVSGALTPLINLLDTLNPKIPTILFGFLALFSGFSTFFLPETIGRHLPQSLEDGEKFGIGDNCFTNCSGQPLTDSIPDIPETMVPLDENKKTKE

Summary

EMBL
BABH01019619    BABH01019620    ODYU01001804    SOQ38505.1    JTDY01000250    KOB78065.1    + More
KQ459600    KPI94147.1    KQ461195    KPJ06782.1    AGBW02008253    OWR53915.1    NWSH01003372    PCG66435.1    KA647574    AFP62203.1    ATLV01022206    KE525330    KFB47260.1    GFDG01001231    JAV17568.1    APCN01005901    CH954181    EDV49113.1    AXCN02001770    AAAB01008933    EAA09977.4    CH964272    EDW84202.1    CM000070    EAL28854.1    CM000160    EDW97349.1    CH902623    EDV30230.1    GGFK01005333    MBW38654.1    CH480815    EDW41945.1    GGFK01004739    MBW38060.1    AE014297    AY051412    AAF55286.3    AAK92836.1    GAMD01001444    JAB00147.1    CP012526    ALC45359.1    GGFL01004766    MBW68944.1    GGFM01001482    MBW22233.1    GGFJ01003900    MBW53041.1    AXCM01018489    GGFM01001401    MBW22152.1    GGFL01004767    MBW68945.1    GGFM01008352    MBW29103.1    DS232244    EDS38307.1    JRES01001582    KNC21762.1    CH933806    EDW15650.1    OUUW01000008    SPP83651.1    SOQ38506.1    LJIG01009436    KRT83083.1    CM000364    EDX12719.1    GANO01002130    JAB57741.1    GFDL01008645    JAV26400.1    GFDL01009959    JAV25086.1    GFDL01008631    JAV26414.1    GFDL01009966    JAV25079.1    GAPW01000803    JAC12795.1    CH940650    EDW66864.1    SPP83652.1    CH477203    EAT48035.1    CH916369    EDV92557.1    AJWK01002452    CCAG010002229    GAKP01004615    JAC54337.1    AJVK01023277    GDHF01023410    JAI28904.1    GBXI01009284    JAD05008.1    GAMC01016458    GAMC01016457    JAB90097.1    GFDF01009199    JAV04885.1    GFDF01009288    JAV04796.1    KPJ06783.1    KQ971312    EEZ98694.2    KQ434984    KZC13133.1    GEBQ01028242    JAT11735.1    JXJN01017337    GECU01037556    JAS70150.1    GECZ01011489    JAS58280.1    CVRI01000047    CRK97916.1    KQ760397    OAD60671.1    GDAI01001882    JAI15721.1    KK107589    QOIP01000001    EZA48635.1    RLU27563.1    KK852463    KDR23392.1    KZ288223    PBC31978.1    GL771642    EFZ09637.1    APGK01053945    KB741239    KB632275    ENN72140.1    ERL91114.1    KQ414710    KOC62989.1    GL446946    EFN87051.1    GEZM01101932    JAV52200.1    GEZM01101933    JAV52199.1   
Pfam
PF00083   Sugar_tr
Interpro
IPR036259   MFS_trans_sf        + More
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR005829   Sugar_transporter_CS       
IPR001190   SRCR       
SUPFAM
SSF103473   SSF103473       
PDB
4LDS     E-value=1.25103e-06,     Score=126

Ontologies

Topology

Length:
519
Number of predicted TMHs:
10
Exp number of AAs in TMHs:
227.4628
Exp number, first 60 AAs:
0.06981
Total prob of N-in:
0.09289
inside
1  -  93
TMhelix
94  -  116
outside
117  -  125
TMhelix
126  -  143
inside
144  -  149
TMhelix
150  -  172
outside
173  -  186
TMhelix
187  -  206
inside
207  -  300
TMhelix
301  -  318
outside
319  -  327
TMhelix
328  -  350
inside
351  -  356
TMhelix
357  -  376
outside
377  -  379
TMhelix
380  -  402
inside
403  -  414
TMhelix
415  -  437
outside
438  -  446
TMhelix
447  -  464
inside
465  -  519
 
 

Population Genetic Test Statistics

Pi
222.855675
Theta
185.127584
Tajima's D
0.67638
CLR
0.158537
CSRT
0.571421428928554
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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