SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13698
Pre Gene Modal
BGIBMGA011090
Annotation
organic_cation_transporter_[Danaus_plexippus]
Location in the cell
PlasmaMembrane   Reliability : 4.976
 

Sequence

CDS
ATGGCCATCATATTTTTATCGCCAAAAGTGTCATATATTTGTGCAAGTACGAACAACGAAACTTGTCCTTGTTCGGATCCTATATACGACACATCAGTCTTCAAACGGACTATAATAATGGAATGGGACTTAATATGTGACAGAAAGTGGTTGACTAGTTTTACGCAAACATTGTTTCAACTGGGCACGCTATTCGGCAGCGTGTTCTTCGGAATGGCCTCGGATAGATTTGGAAGGAAAAACCCTCTGCTAGTGGCCGTCGTGATTCAAGTAACGATGGGTATTACTGCCGCTTATGTCCCAGATTATTGGAGTTTTACATTCGTAAGGTTCCTTGTGGGGATGTCCGTTGGTGGCACAATGGTGACGTCATTTGTTATCGTCATGGAGTTTGTTGGAGCTCAGTACCGAGATGTAATCTCAGCTTTGTATCAAGTACCTTTCAATCTGGGTCACATGCTTTTACCAGTTTTTGGGTACTTTTGTAGAGATTACTCTGTTTTTCAACTTTCAATATCAGTCCCCGTCATTGTTCTGTTGTCATATGTAATTTTGGTACCGGAAACGCCACGATGGTTGATAGCAGTGAATAGAACCGAGGAAGCCATCACCATTTTAGAACGTGTAGCGAAAATAAACAAACGACCTACGGATGCTATCAGAACGGATATCGAAGCGTTTCAAGCAAGCTTAGAGAAAAACAAATTAAAAAAAGGAACCGTACTAGACTTATTTCGGACACCGAACTTGCGGAAAAATTTATTGGCTATGTCTTTCAATTGGTTGACATGCAGTTATTGTTTTTACGGAGTGTCCCAATATGTTGGTCAACTCAGTGGAGACGTTTTCATTAATGTGGCTGCAAGCGCCAGTGTCACGCTTCTTGGCACCCTGTTGTCTATACCGTTAATGAAAGTTATTGGAAGAAGAACAATCGTCATAGTATTTAGTTTTGTTTGCGCGTTTTGTCTCCTGGTTCTGGCTGTAATACCACAAGGAACAGGTTCGGTAGTTTGCGCTAGCATTGGTGTTGTTGCAAGTTTCATTGTGTTCGTTGTTGTCTATTTGTATTGTACCGAGCTATTCCCTACTGTCGTTAGAAATGCGGCTATCGGGGTTTCGTCTATGAGTGCTCGTGTTGGTTCTATGGTGGCTCCTTTTGTGATATCGCTTGAGGATGTGGCCGTCTGGCTGCCACCAGTTTGTTTTGCATTATTACCTTTGATAGCGGGCTGTGTTACGTTCCTATTACCTGAAACCAAAGGCTGTGAATTCATGACTACCATCGAAGAGGGTGAACAATTTGGAAAGAAGAAAACTTCTAAAACGAAAGCGTGA
Protein
MAIIFLSPKVSYICASTNNETCPCSDPIYDTSVFKRTIIMEWDLICDRKWLTSFTQTLFQLGTLFGSVFFGMASDRFGRKNPLLVAVVIQVTMGITAAYVPDYWSFTFVRFLVGMSVGGTMVTSFVIVMEFVGAQYRDVISALYQVPFNLGHMLLPVFGYFCRDYSVFQLSISVPVIVLLSYVILVPETPRWLIAVNRTEEAITILERVAKINKRPTDAIRTDIEAFQASLEKNKLKKGTVLDLFRTPNLRKNLLAMSFNWLTCSYCFYGVSQYVGQLSGDVFINVAASASVTLLGTLLSIPLMKVIGRRTIVIVFSFVCAFCLLVLAVIPQGTGSVVCASIGVVASFIVFVVVYLYCTELFPTVVRNAAIGVSSMSARVGSMVAPFVISLEDVAVWLPPVCFALLPLIAGCVTFLLPETKGCEFMTTIEEGEQFGKKKTSKTKA

Summary

EMBL
BABH01019597    NWSH01000020    PCG80708.1    ODYU01006026    SOQ47506.1    KQ459600    + More
KPI94131.1    KQ461195    KPJ06796.1    KPI94132.1    AGBW02008774    OWR52572.1    NWSH01000010    PCG80916.1    PCG80709.1    RSAL01000008    RVE54031.1    OWR52573.1    JTDY01000698    KOB76182.1    ODYU01002452    SOQ39959.1    PCG80713.1    PCG80714.1    AJWK01002434    AJWK01002435    AJWK01002436    AK402884    BAM19447.1    GFDL01008134    JAV26911.1    KPJ06789.1    KPI94138.1    DS232350    EDS40471.1    BABH01019600    ODYU01013012    SOQ59616.1    GAPW01001011    JAC12587.1    JXUM01109993    KQ565372    KXJ71040.1    AJVK01009733    CH477305    EAT44124.1    AAAB01008859    EAA07935.5    APCN01000614    JTDY01005148    KOB67323.1    AXCN02000238    GALX01001195    JAB67271.1    KPJ06794.1    GGFL01004566    MBW68744.1    AXCM01003853    GGFL01004591    MBW68769.1    ATLV01018145    KE525215    KFB42743.1    KQ971342    EFA04006.1    CVRI01000052    CRK99712.1    EFA04007.2    GEZM01088532    JAV58130.1    GEZM01088533    JAV58129.1    KQ971381    EEZ97586.2    NEVH01005889    PNF38331.1    KB632314    ERL92208.1    AGBW02012077    OWR45719.1    JRES01001582    KNC21772.1    GFXV01006391    MBW18196.1    CH480816    EDW48649.1    GGMS01012221    MBY81424.1    CH902619    EDV36845.1    AAZX01006832    KPI94133.1    ABLF02040797    ABLF02040821    ABLF02040843    ABLF02040845    AE013599    AY058478    BT120184    AAF57511.1    AAL13707.1    ADB91432.1    CM000362    CM002911    EDX07862.1    KMY95206.1    APGK01048466    KB741110    ENN73834.1    GDHF01021687    JAI30627.1    CM000158    EDW91444.1    KRJ99843.1    CH954179    EDV55264.1    KQ414672    KOC64208.1    CH963850    EDW74843.1    GAKP01006475    JAC52477.1    GL766616    EFZ14896.1    GBXI01013722    GBXI01009990    JAD00570.1    JAD04302.1    CH916375    EDV98284.1    AAZX01002446    GEDC01010881    JAS26417.1    NNAY01003667    OXU19035.1    GBYB01006687    GBYB01007297    GBYB01007300    JAG76454.1    JAG77064.1    JAG77067.1    GL435531    EFN73254.1    CP012524    ALC42779.1    GBGD01001232    JAC87657.1    GL769313    EFZ10529.1    GFTR01006756    JAW09670.1    KQ760085    OAD61975.1    GBYB01001833    JAG71600.1    GL448504    EFN84558.1    GBXI01012425    JAD01867.1    KQ976914    KYN07128.1    OUUW01000001    SPP75505.1    SPP75504.1    GDKW01002245    JAI54350.1    ADTU01022726   
Pfam
PF00083   Sugar_tr        + More
PF01553   Acyltransferase
PF16076   Acyltransf_C
PF07690   MFS_1
Interpro
IPR036259   MFS_trans_sf        + More
IPR020846   MFS_dom       
IPR005829   Sugar_transporter_CS       
IPR005828   MFS_sugar_transport-like       
IPR032098   Acyltransf_C       
IPR002123   Plipid/glycerol_acylTrfase       
IPR011701   MFS       
SUPFAM
SSF103473   SSF103473       
PDB
4LDS     E-value=1.15234e-11,     Score=169

Ontologies

Topology

Length:
445
Number of predicted TMHs:
11
Exp number of AAs in TMHs:
233.94241
Exp number, first 60 AAs:
8.19536
Total prob of N-in:
0.13244
outside
1  -  49
TMhelix
50  -  72
inside
73  -  83
TMhelix
84  -  101
outside
102  -  110
TMhelix
111  -  133
inside
134  -  139
TMhelix
140  -  162
outside
163  -  166
TMhelix
167  -  186
inside
187  -  253
TMhelix
254  -  276
outside
277  -  281
TMhelix
282  -  304
inside
305  -  310
TMhelix
311  -  330
outside
331  -  333
TMhelix
334  -  356
inside
357  -  368
TMhelix
369  -  391
outside
392  -  394
TMhelix
395  -  417
inside
418  -  445
 
 

Population Genetic Test Statistics

Pi
220.153956
Theta
195.736269
Tajima's D
0.523468
CLR
0.338998
CSRT
0.52062396880156
Interpretation
Uncertain
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