Gene

KWMTBOMO13687

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):6791910-6793957      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.515

CDS

ATGCCGCCTCTCGTACGCCCCTCAGGCCAACCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGCTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTTAAGGAGGCGATTGATAGCCTACAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGCGCTTAAATTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAATAAAATTCTTATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGAGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATCCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTTCGCCCTCTCCCCGTTACTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCCCTCCCGACTAGGCGCGTCAACACCTCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGATCGTGCCGCCTTCATTCTAGGACGTCTCTATCCGATGATATGTAGGAGAAGTAAAATGTCCCTTAGAAATAAGGTGACACACACTCTACAAAACTTGCATACGCAACGTCATGACCTATGCAAGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCACCAGTAAGTATATGCAGTCGGCGTCAATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTCCCGATCCACTAACGGTGCTTCTAGGTACTTCAAGCACCGGTCACCGTTCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGTAAATTAA

Protein

MPPLVRPSGQPPAYDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQEHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGFALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTSAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTHTLQNLHTQRHDLCKIAVGAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLGTSSTGHRSRRTRRLRRRARRVN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   V5GNJ2   A0A2S2PR14   X1WMU5   A0A087U2S8   J9KKL3   X1WWC4   X1WXU3   X1WLB2   A0A2S2PX53   A0A2S2QEE0   A0A224XF24   A0A1Y1M7E9   A0A023EYS8   J9KC83   A0A2S2QJM7   A0A2S2NGV8   A0A2J7R579   A0A2J7QPI2   A0A2J7R4B1   A0A2S2PH29   A0A2J7R7D0   A0A023F6S4   D7EM17   A0A2S2N814   A0A2S2Q823   A0A2H8U0H5   A0A1Y1LKN6   A0A0J7KBP6   A0A139W8R7   A0A2S2PPK8   A0A2J7PMP9   A0A2J7QUJ9   A0A2J7RPU2   A0A2J7Q059   A0A2J7RS77   A0A2J7RIW7   A0A2J7RB54   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7PMP6   A0A2J7RM10   A0A3N5Z7I3   A0A2J7R8R8   J9LC15   J9LC21   A0A2S2NPG3   A0A2S2P698   A0A2J7Q0Q6   A0A2S2Q383   A0A2S2Q7E7   A0A2J7Q2R1   A0A2A4K8E7   A0A2J7PDM0   A0A2H8TWD9   A0A2J7QEZ4   A0A2J7Q5G9   A0A224X6U5   A0A2J7R6U1   A0A2J7R2E1   A0A2S2QTZ8   A0A2J7QFL0   A0A2S2R9D4   A0A2J7PVX3   A0A2J7RKP3   A0A0A9YJ00   A0A2J7QB68   A0A224X6S1   A0A2J7QR37   A0A2J7PDS9   A0A0A9YU04   A0A2J7PBY3   A0A2J7QY69   A0A2R7WPC5   A0A2J7RL12   A0A2J7Q1Y9   J9KCZ4   A0A2J7RS81  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    25474469    30086797    25401762   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    KK117880    KFM71667.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    ABLF02008933    ABLF02042518    ABLF02057746    GGMS01000737    MBY69940.1    GGMS01006359    MBY75562.1    GFTR01008038    JAW08388.1    GEZM01038405    JAV81653.1    GBBI01004395    JAC14317.1    ABLF02033757    GGMS01008766    MBY77969.1    GGMR01003407    MBY16026.1    NEVH01007393    PNF35987.1    NEVH01012089    PNF30491.1    NEVH01007578    PNF35646.1    GGMR01016114    MBY28733.1    NEVH01006736    PNF36716.1    GBBI01001646    JAC17066.1    KQ973412    EFA12510.2    GGMR01000676    MBY13295.1    GGMS01004685    MBY73888.1    GFXV01007093    MBW18898.1    GEZM01053022    JAV74219.1    LBMM01010106    KMQ87671.1    KQ973073    KXZ75680.1    GGMR01018716    MBY31335.1    NEVH01023961    PNF17613.1    NEVH01010546    PNF32261.1    NEVH01001355    PNF42855.1    NEVH01020071    PNF21969.1    NEVH01000280    PNF43672.1    NEVH01003017    PNF40781.1    NEVH01005938    PNF38077.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    RPOV01000134    RPJ78669.1    NEVH01006721    PNF37225.1    ABLF02020655    ABLF02039168    ABLF02061060    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMR01006408    MBY19027.1    GGMR01012305    MBY24924.1    NEVH01019964    PNF22161.1    GGMS01002992    MBY72195.1    GGMS01004444    MBY73647.1    NEVH01019080    PNF22876.1    NWSH01000032    PCG80497.1    NEVH01026386    PNF14434.1    GFXV01006424    MBW18229.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GFTR01008251    JAW08175.1    NEVH01006754    PNF36554.1    NEVH01007838    PNF34986.1    GGMS01012005    MBY81208.1    NEVH01014858    PNF27387.1    GGMS01017365    MBY86568.1    NEVH01020940    PNF20481.1    NEVH01002716    PNF41415.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01016302    PNF25823.1    GFTR01008271    JAW08155.1    NEVH01011985    PNF31054.1    NEVH01026154    PNF14491.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    KK855204    PTY21424.1    NEVH01002704    PNF41489.1    NEVH01019376    PNF22596.1    ABLF02008463    NEVH01000269    PNF43694.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000036403    + More
UP000218220   

PRIDE

Q9XXW0    Q93137    Q9BPQ0    K9N5J5   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
PF13358   DDE_3

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR038717   Tc1-like_DDE_dom       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   V5GNJ2   A0A2S2PR14   X1WMU5   A0A087U2S8   J9KKL3   X1WWC4   X1WXU3   X1WLB2   A0A2S2PX53   A0A2S2QEE0   A0A224XF24   A0A1Y1M7E9   A0A023EYS8   J9KC83   A0A2S2QJM7   A0A2S2NGV8   A0A2J7R579   A0A2J7QPI2   A0A2J7R4B1   A0A2S2PH29   A0A2J7R7D0   A0A023F6S4   D7EM17   A0A2S2N814   A0A2S2Q823   A0A2H8U0H5   A0A1Y1LKN6   A0A0J7KBP6   A0A139W8R7   A0A2S2PPK8   A0A2J7PMP9   A0A2J7QUJ9   A0A2J7RPU2   A0A2J7Q059   A0A2J7RS77   A0A2J7RIW7   A0A2J7RB54   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7PMP6   A0A2J7RM10   A0A3N5Z7I3   A0A2J7R8R8   J9LC15   J9LC21   A0A2S2NPG3   A0A2S2P698   A0A2J7Q0Q6   A0A2S2Q383   A0A2S2Q7E7   A0A2J7Q2R1   A0A2A4K8E7   A0A2J7PDM0   A0A2H8TWD9   A0A2J7QEZ4   A0A2J7Q5G9   A0A224X6U5   A0A2J7R6U1   A0A2J7R2E1   A0A2S2QTZ8   A0A2J7QFL0   A0A2S2R9D4   A0A2J7PVX3   A0A2J7RKP3   A0A0A9YJ00   A0A2J7QB68   A0A224X6S1   A0A2J7QR37   A0A2J7PDS9   A0A0A9YU04   A0A2J7PBY3   A0A2J7QY69   A0A2R7WPC5   A0A2J7RL12   A0A2J7Q1Y9   J9KCZ4   A0A2J7RS81  

PDB

6AR3     E-value=0.0044979,     Score=96

KEGG

101735942    no KO assigned | (RefSeq) uncharacterized LOC101735942

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676   GO:0016021  

Length:

559

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.708619999999997

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01792

outside

1  -  559

 

 

Pi

19.502523

Theta

32.301801

Tajima's D

1.623091

CLR

0.049758

CSRT

0.816059197040148

Interpretation

Uncertain