Gene

KWMTBOMO13684

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(-):6644607-6645445      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.258 Mitochondrial   Reliability : 1.369

CDS

ATGCAAGTTGCGTTCAGTGGTCGAGCTTGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCGGGGCGTGGCGCGTGTCCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCTCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MQVAFSGRAWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCLAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A2W1B333   A0A0J7K2M2   A0A2W1BSQ5   + More
A0A2W1BDU5   A0A0J7N1D9   A0A2W1C3J5   Q8MY27   A0A0J7KJB9   A0A3L8DDS1   Q8MY31   Q8MY33   A0A0J7MZM4   Q8MY35   A0A0J7KCQ3   A0A3S2NGT9   A0A0J7KIY3   A0A3S2LNH8   A0A2H1WNZ5   A0A0J7KS67   A0A2H1VYR8   A0A3S2N998   E2BVR6   A0A0J7N7H9   A0A0L7QYH7   O01419   A0A0J7KIQ5   A0A194R5D3   A0A3L8DDV9   A0A3L8D2G3   A0A3L8DXT9   A0A0J7KQU9  

Pubmed

12644555    28756777    30249741    20798317    9092665    26354079    + More

EMBL

AB090825    BAC57926.1    AB126050    BAD86650.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    LBMM01016102    KMQ84557.1    KZ149950    PZC76665.1    KZ150308    PZC71477.1    LBMM01012027    KMQ86470.1    KZ149896    PZC78733.1    AB078935    BAC06462.1    LBMM01006538    KMQ90523.1    QOIP01000009    RLU18544.1    AB078931    BAC06456.1    AB078930    BAC06454.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    AB078929    BAC06452.1    LBMM01009494    KMQ88097.1    RSAL01000109    RVE47213.1    LBMM01006909    KMQ90209.1    RSAL01003504    RVE40273.1    ODYU01009945    SOQ54696.1    LBMM01003679    KMQ93242.1    ODYU01005282    SOQ45985.1    RSAL01000481    RVE41577.1    GL450953    EFN80213.1    LBMM01008861    KMQ88580.1    KQ414692    KOC63606.1    D85594    BAA19776.1    LBMM01006996    KMQ90129.1    KQ460685    KPJ12887.1    QOIP01000010    RLU18098.1    QOIP01000031    RLU14697.1    QOIP01000003    RLU25053.1    LBMM01004152    KMQ92762.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000008237    UP000053825    UP000053240    + More

PRIDE

Q868Q4    Q5KTM7    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF01421   Reprolysin
PF00732   GMC_oxred_N
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR011990   TPR-like_helical_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF51905   SSF51905       
SSF57667   SSF57667       
SSF48452   SSF48452       

Gene 3D

3.60.10.10     3.40.390.10     3.50.50.60     1.25.40.10    

ProteinModelPortal

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A2W1B333   A0A0J7K2M2   A0A2W1BSQ5   + More
A0A2W1BDU5   A0A0J7N1D9   A0A2W1C3J5   Q8MY27   A0A0J7KJB9   A0A3L8DDS1   Q8MY31   Q8MY33   A0A0J7MZM4   Q8MY35   A0A0J7KCQ3   A0A3S2NGT9   A0A0J7KIY3   A0A3S2LNH8   A0A2H1WNZ5   A0A0J7KS67   A0A2H1VYR8   A0A3S2N998   E2BVR6   A0A0J7N7H9   A0A0L7QYH7   O01419   A0A0J7KIQ5   A0A194R5D3   A0A3L8DDV9   A0A3L8D2G3   A0A3L8DXT9   A0A0J7KQU9  

KEGG

100141455    no KO assigned | (RefSeq) Hig, Bmhig; hikaru genki

GO

GO:0003964   GO:0016746   GO:0016021   GO:0050660   GO:0016614  

Length:

215

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01126

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07626

outside

1  -  215

 

 

Pi

155.35833

Theta

77.865903

Tajima's D

2.079318

CLR

64.411469

CSRT

0.893755312234388

Interpretation

Uncertain