Gene

KWMTBOMO13681

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_slit_homolog_1_protein-like_[Bombyx_mori]

Location

Bomo_Chr23(-):6159664-6163955      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.162

CDS

ATGCTAATAAAAAGGACGGCCGCGGATAGACTTGAGAAACGAACTTTTAATCGGATTATAGTGTGCGTGTTGTTCTATTGCCATGCTGTGGACAGAAGCGTCGCGGCAGAGACGCCGCACGAATGCGCTTACCGTAGTTCCGAAGCGGAAACGTCGGGGAGCACGGTGCTCTTCTGCAAGATTCGGACCATAAGCAGTTTGGATCACCTGCTACAGAACATCAGCAAGACTCACTACGACGACGTCATATCATTGCACGTTCAATGCAGCGAAATTCTATTTTTCGAGAGCACTTTAACCACAAGCGCCCAAAAGCCGACCGGTAAACACACGAGTCTTGGAAAGTTGAGAGATCTCGTCATCGACAGATGCAAGTTACGTCAAATACCGGCCCGTGCATTCGAGAGTTTCAAAGATCTGAAACGTCTGCATGTGACCACTCATAACAGCGAATGGTCCGCGATGACAATGGAACTGAATGAAGAAGCTTTCGCAGGTTTGAATGAACTAGTCGAACTCAATCTTAGTAACAACAACATCTGGAGCACCAAAACAGAAACATTTTGTTCACTGTACAGTTTAAAAGTGTTGAACCTCACAAATAATCACCTACAAAACATAAAGACTATCGGTTTCTCGGACAGTCTGAGGGAACAAAACTTAAGCTTGAGAACTTGTAACTTAGTCATAGAGACACTAGATATGTCATATAATGATTTGATTGTTGTAAATGATAATAGTTTATCAAAGTTACGTTCGCTATCGAAACTTTTATTGCAAAATAATGCGTTGTCTAATTTAGAAGGTGGTGCCTTTGAAGGATTGCTCAGCTTAGAGGTTCTCAATTTATCAAGCAATTTCATGAATACACTCCCGCCTGATTTGTTTTCTGAAACTAAATCATTAAAAGAAATTAATCTTAGTAATAACACTATTAACAATTTGCCTCCGGGACTTTTTGATAATTTAGATCAACTACAAGTATTAGATTTATCTCTCAACGAACTGACTAGTCAGTGGATTAATAAGAATACATTTGTTGGTTTATTAAGATTAGTCATATTAAACCTATCTTATAATAAGCTTAGTAGAATAGATCGTTATATGCTCCAGGATTTGTACAGTTTGCAGAAATTAAATTTAGAACATAACGACATATCCACAATTGATAAACATGCTTTCAGTGAATTAAGGAATCTGCATTCGCTAACACTATCTAATAACCAACTTGTGCACATTGAAACACATTTGTTTACAGATCTACATGTGCTACATGAACTCTTTATTGATAACAATAAAATCAAACACATCGAAGATAATGCCTTTGATAATATGACTGCAATAGAAGACTTGAGTCTTAATGACAATTTTCTCTCATCTGTCCCGGCGTCGATTCGCAAGCTACGCTCGCTGAGGTCTCTCGACATAGGCAACAACAATATAACACATCTAACCCGCGAAAACTTTCGCGGCTTGTCCGAACTTTTCGGTTTACGACTAGTTGATAACAAAGTTACCAATTTAAATGAGGACACTTTCGAGCATTTACCACAGCTGCAGGTATTAAATTTGGCATCAAACAAAATCAGACATGTTGCGTCCGGATGTTTTCGTAAAAACATAAATTTGAAACTCCTGCGAATGGACGGCAATGAAATAACAAAGTTTGACGGTATTTTCAGTACCTTGAATAGTTTAGTATGGCTTAACATGTCAGCGAATAAATTATCATACTTTGATTTTCGTTCATTTCCAGAAAGTTTGGAGTGGCTCGATTTGCATAAGAACTCTATATCAACTTATAAGAATGACGATACCCATTCTAATGTTAATATTAAACTACTGGACTTAAGTTATAATAACATAACGGAAATAACTGTGACTTCAATACCGAATTCCGTAGAAAAACTTTATTTGAACGACAATAATATACAGAACATTCAAGTCGGTTCCTTTTCGAAACTACAAAGGCTATCAACTGTGACTTTAAATAATAACAAACTAGTCCATCTTGACATGAATGCGTTTAGGTTAGATCAAATAGATGAAGATAGTGACTTACCCGAGTTCTTTATAAGCGGAAATACATTTATTTGTGACTGTTCAATGGAATGGATTCAGCGCATTAATCATTTGAGCCACAGTCGACAATACCCGCGCGTGTTAGATTTAGATAAAGCTTTGTGTTCGCTGGTCCACTCGCGTGCTAAACGTAAAAAATTGATAATAGACATGTCGCCTTCGGACTTTCTTTGCCCTTACGAAAGTCATTGTTTCGCATTGTGTCAATGTTGTGACTTTGTGGCGTGCGACTGTGAAATGATTTGTCCAAACGATTGTCGATGCTATCACGATATCCCTTGGAATGCCAACGTTGTTGATTGTTCAAATGCCGGTTACACGGAAGTACCTAAGCACATTCCGATGGATGCCACTGAAATATATTTAGATGGAAATCACATAAGTCACTTGGGAAATCATGTTTTTATCGGCAAAAAAAAGCTACAAGTACTTTATTTAAACAATACTAAATTGAAGGAAGTCAACAATCAAACCTTTAAAGGAGTCGATTCCCTGAGGGTACTTCATTTGGAAAACAACAAGCTTGTGGAATTAAAAGGCGATGAATTTTTACATCTCAACAGTTTAAACGAATTATATCTAGATCACAACGCGATAACTCATGTCGCTAATAATACTTTTTCATCTTTGAAATCGCTCTCAGTTTTGCGAATTGACGATAACAAGCTCGTAAATTTCTTTCCATGGAAATTATTAGCTTCATCCTCAGAAAGCTTAGCTCATGTGTCGATTGAAGGTAATCAATATTCGTGCGACTGTAAAAGCATAGCGGAATTGGATTCATGGCTCAGGAGAGACCCTGGGGACCCTGAGAAAATGCTATGCACAGACTCTGAAGGGAAACCAACTAAAATAACAATAGCCTCCGTCTTGAGTCACTGTAAAGAATACATGGGCTCGATAAGCGACCCAACAATGTCTAGAGATGAGGTCATTTCAAATCAATTTTAA

Protein

MLIKRTAADRLEKRTFNRIIVCVLFYCHAVDRSVAAETPHECAYRSSEAETSGSTVLFCKIRTISSLDHLLQNISKTHYDDVISLHVQCSEILFFESTLTTSAQKPTGKHTSLGKLRDLVIDRCKLRQIPARAFESFKDLKRLHVTTHNSEWSAMTMELNEEAFAGLNELVELNLSNNNIWSTKTETFCSLYSLKVLNLTNNHLQNIKTIGFSDSLREQNLSLRTCNLVIETLDMSYNDLIVVNDNSLSKLRSLSKLLLQNNALSNLEGGAFEGLLSLEVLNLSSNFMNTLPPDLFSETKSLKEINLSNNTINNLPPGLFDNLDQLQVLDLSLNELTSQWINKNTFVGLLRLVILNLSYNKLSRIDRYMLQDLYSLQKLNLEHNDISTIDKHAFSELRNLHSLTLSNNQLVHIETHLFTDLHVLHELFIDNNKIKHIEDNAFDNMTAIEDLSLNDNFLSSVPASIRKLRSLRSLDIGNNNITHLTRENFRGLSELFGLRLVDNKVTNLNEDTFEHLPQLQVLNLASNKIRHVASGCFRKNINLKLLRMDGNEITKFDGIFSTLNSLVWLNMSANKLSYFDFRSFPESLEWLDLHKNSISTYKNDDTHSNVNIKLLDLSYNNITEITVTSIPNSVEKLYLNDNNIQNIQVGSFSKLQRLSTVTLNNNKLVHLDMNAFRLDQIDEDSDLPEFFISGNTFICDCSMEWIQRINHLSHSRQYPRVLDLDKALCSLVHSRAKRKKLIIDMSPSDFLCPYESHCFALCQCCDFVACDCEMICPNDCRCYHDIPWNANVVDCSNAGYTEVPKHIPMDATEIYLDGNHISHLGNHVFIGKKKLQVLYLNNTKLKEVNNQTFKGVDSLRVLHLENNKLVELKGDEFLHLNSLNELYLDHNAITHVANNTFSSLKSLSVLRIDDNKLVNFFPWKLLASSSESLAHVSIEGNQYSCDCKSIAELDSWLRRDPGDPEKMLCTDSEGKPTKITIASVLSHCKEYMGSISDPTMSRDEVISNQF

Similarity

Belongs to the Toll-like receptor family.

Uniprot

A0A2H1VY12   A0A2A4JHN6   A0A0L7LB67   A0A194R9A1   A0A2P8YLA0   A0A2J7QTB8   + More
A0A067RDD5   A0A1Y1N5R0   U4U980   T1HTM0   A0A0A9ZIG4   D6WCH9   A0A1B6D9Z8   E0VC85   A0A154NZK5   A0A173ADT7   A0A0M9A8F0   E2BUC9   A0A0L7QT80   A0A346RAF7   A0A2H1VLQ9   A0A194REQ7   A0A2A4JYQ2   A0A026WSN2   N0A0T6   A0A194PL06   A0A0C9QMR2   A0A0L7L0F7   A0A088AAK1   A0A158NHZ4   A0A195BXM2   F4WCN0   A0A151WXS3   A0A195DF99   A0A336LWU3   A0A182GFV2   A0A182WDG0   A0A182JLH8   A0A336MA92   A0A182TLV4   A0A182QP16   A0A182TJZ3   A0A182ML25   A0A182YPU4   N6T159   A0A182UR06   A0A182LHS2   Q7QHH4   A0A195CVE8   A0A182HWF3   A0A182N2E6   A0A182RTF7   A0A182X5J7   J9K5Y3   Q17DZ2   A0A182KEJ4   A0A182NZJ4   A0A084WCF6   A0A2S2PI41   A0A2H8TSA7   A0A0J7KUE8   A0A2S2QZS4   A0A182FKH9   W5JR01   A0A194R9V1   A0A194PLB4   B0X372   A0A2A4JHX4   B0XFP7   A0A2H1VEQ6   A0A346RAF8   E1ZY04   A0A0L7LDH5   K7JAV1   A0A182H5C2   Q16VI7   Q7QHH1   A0A182YPU6   H9JNH9   A0A212EVE6   A0A084WCI0   A0A1S4K220   A0A1B6G5V5   A0A1S4FMM1   A0A1S4H5Y8   A0A182FKI1   A0A182HWF1   A0A182X5J9   A0A182LHS4   A0A182N2E1   A0A182UWU4   A0A195ESS7   A0A182MNH4   A0A182K0G0   A0A182UF17   W5JWK6   A0A2M4AA49   A0A182RTF5   A0A2M4AC88   A0A182Q9N9  

Pubmed

26227816    26354079    29403074    24845553    28004739    23537049    + More
25401762    18362917    19820115    20566863    20798317    29910977    24508170    30249741    23497397    21347285    21719571    26483478    25244985    20966253    12364791    14747013    17210077    17510324    24438588    20920257    23761445    20075255    19121390    22118469   

EMBL

ODYU01005150    SOQ45725.1    NWSH01001375    PCG71481.1    JTDY01001847    KOB72728.1    + More
KQ460473    KPJ14418.1    PYGN01000514    PSN45021.1    NEVH01011197    PNF31826.1    KK852574    KDR21046.1    GEZM01012073    JAV93233.1    KB632184    ERL89622.1    ACPB03003065    GBHO01000879    JAG42725.1    KQ971311    EEZ99355.1    GEDC01030532    GEDC01029683    GEDC01020757    GEDC01014780    GEDC01000406    JAS06766.1    JAS07615.1    JAS16541.1    JAS22518.1    JAS36892.1    DS235049    EEB10991.1    KQ434786    KZC05057.1    KX086265    KK854633    ANG08888.1    PTY17485.1    KQ435727    KOX78043.1    GL450630    EFN80713.1    KQ414755    KOC61774.1    MH243023    AXS59157.1    ODYU01003249    SOQ41753.1    KPJ14416.1    NWSH01000423    PCG76502.1    KK107111    QOIP01000011    EZA59042.1    RLU16722.1    KC355238    AGK40938.1    KQ459600    KPI94116.1    GBYB01004774    JAG74541.1    JTDY01003948    KOB68796.1    ADTU01001755    KQ976398    KYM92696.1    GL888070    EGI68210.1    KQ982662    KYQ52653.1    KQ980905    KYN11517.1    UFQT01000175    SSX21133.1    JXUM01060447    KQ562102    KXJ76681.1    UFQT01000297    SSX22958.1    AXCN02001726    AXCM01004773    APGK01048501    APGK01048502    KB741112    ENN73829.1    AAAB01008816    EAA05150.4    KQ977259    KYN04610.1    APCN01001487    ABLF02037547    CH477289    EAT44679.1    ATLV01022666    KE525335    KFB47900.1    GGMR01016492    MBY29111.1    GFXV01005290    MBW17095.1    LBMM01003120    KMQ93943.1    GGMS01014055    MBY83258.1    ADMH02000685    ETN65330.1    KPJ14417.1    KPI94117.1    DS232310    EDS39574.1    NWSH01001355    PCG71561.1    DS232948    EDS26928.1    ODYU01002158    SOQ39297.1    MH243024    AXS59158.1    GL435158    EFN73944.1    JTDY01001660    KOB73226.1    AAZX01003450    AAZX01009988    JXUM01111276    KQ565488    KXJ70919.1    CH477591    EAT38569.2    EAA05071.4    BABH01019465    AGBW02012218    OWR45424.1    ATLV01022669    KFB47924.1    GECZ01011945    JAS57824.1    APCN01001486    KQ981979    KYN31305.1    AXCM01015215    ADMH02000023    ETN68058.1    GGFK01004289    MBW37610.1    GGFK01005049    MBW38370.1    AXCN02001727   

Proteomes

UP000218220    UP000037510    UP000053240    UP000245037    UP000235965    UP000027135    + More
UP000030742    UP000015103    UP000007266    UP000009046    UP000076502    UP000053105    UP000008237    UP000053825    UP000053097    UP000279307    UP000053268    UP000005203    UP000005205    UP000078540    UP000007755    UP000075809    UP000078492    UP000069940    UP000249989    UP000075920    UP000075880    UP000075902    UP000075886    UP000075883    UP000076408    UP000019118    UP000075903    UP000075882    UP000007062    UP000078542    UP000075840    UP000075884    UP000075900    UP000076407    UP000007819    UP000008820    UP000075881    UP000075885    UP000030765    UP000036403    UP000069272    UP000000673    UP000002320    UP000000311    UP000002358    UP000005204    UP000007151    UP000078541   

PRIDE

H9JNH9   

Pfam

PF13855   LRR_8        + More
PF00560   LRR_1
PF01582   TIR
PF13676   TIR_2
PF13306   LRR_5
PF12799   LRR_4

Interpro

IPR000372   LRRNT        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR032675   LRR_dom_sf       
IPR035897   Toll_tir_struct_dom_sf       
IPR000157   TIR_dom       
IPR000483   Cys-rich_flank_reg_C       
IPR026906   LRR_5       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF52200   SSF52200       

Gene 3D

3.40.50.10140     3.80.10.10    

ProteinModelPortal

A0A2H1VY12   A0A2A4JHN6   A0A0L7LB67   A0A194R9A1   A0A2P8YLA0   A0A2J7QTB8   + More
A0A067RDD5   A0A1Y1N5R0   U4U980   T1HTM0   A0A0A9ZIG4   D6WCH9   A0A1B6D9Z8   E0VC85   A0A154NZK5   A0A173ADT7   A0A0M9A8F0   E2BUC9   A0A0L7QT80   A0A346RAF7   A0A2H1VLQ9   A0A194REQ7   A0A2A4JYQ2   A0A026WSN2   N0A0T6   A0A194PL06   A0A0C9QMR2   A0A0L7L0F7   A0A088AAK1   A0A158NHZ4   A0A195BXM2   F4WCN0   A0A151WXS3   A0A195DF99   A0A336LWU3   A0A182GFV2   A0A182WDG0   A0A182JLH8   A0A336MA92   A0A182TLV4   A0A182QP16   A0A182TJZ3   A0A182ML25   A0A182YPU4   N6T159   A0A182UR06   A0A182LHS2   Q7QHH4   A0A195CVE8   A0A182HWF3   A0A182N2E6   A0A182RTF7   A0A182X5J7   J9K5Y3   Q17DZ2   A0A182KEJ4   A0A182NZJ4   A0A084WCF6   A0A2S2PI41   A0A2H8TSA7   A0A0J7KUE8   A0A2S2QZS4   A0A182FKH9   W5JR01   A0A194R9V1   A0A194PLB4   B0X372   A0A2A4JHX4   B0XFP7   A0A2H1VEQ6   A0A346RAF8   E1ZY04   A0A0L7LDH5   K7JAV1   A0A182H5C2   Q16VI7   Q7QHH1   A0A182YPU6   H9JNH9   A0A212EVE6   A0A084WCI0   A0A1S4K220   A0A1B6G5V5   A0A1S4FMM1   A0A1S4H5Y8   A0A182FKI1   A0A182HWF1   A0A182X5J9   A0A182LHS4   A0A182N2E1   A0A182UWU4   A0A195ESS7   A0A182MNH4   A0A182K0G0   A0A182UF17   W5JWK6   A0A2M4AA49   A0A182RTF5   A0A2M4AC88   A0A182Q9N9  

PDB

4LXS     E-value=6.79861e-36,     Score=382

KEGG

101738464    no KO assigned | (RefSeq) slit homolog 1 protein-like

GO

GO:0016021   GO:0007165   GO:0045087   GO:0004721   GO:0008201   GO:0048495   GO:0005515   GO:0008270   GO:0043531   GO:0051276   GO:0016491   GO:0016620   GO:0016787   GO:0003676   GO:0015930  

Length:

1010

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.133570000000001

Exp number, first 60 AAs:

0.12847

Total prob of N-in:

0.00722

outside

1  -  1010

 

 

Pi

34.270299

Theta

127.675489

Tajima's D

-2.211412

CLR

187.497611

CSRT

0.00569971501424929

Interpretation

Uncertain